Wall clock time and date at job start Mon Mar 30 2020 03:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.44109 * 1 3 3 C 1.41652 * 120.93109 * 2 1 4 4 C 1.35267 * 124.66778 * 179.02057 * 3 2 1 5 5 C 1.40030 * 116.44638 * 351.82061 * 4 3 2 6 6 C 1.36045 * 123.71918 * 6.29709 * 5 4 3 7 7 C 1.38052 * 122.26636 * 175.07000 * 2 1 3 8 8 C 1.49648 * 119.18722 * 11.34626 * 7 2 1 9 9 H 1.08367 * 108.72994 * 304.81621 * 8 7 2 10 10 C 1.58360 * 109.27677 * 66.23424 * 8 7 2 11 11 C 1.56794 * 114.97764 * 186.08930 * 8 7 2 12 12 H 1.16132 * 105.18855 * 268.17606 * 11 8 7 13 13 C 1.50719 * 107.07952 * 150.88182 * 11 8 7 14 14 H 1.07995 * 120.00498 * 353.91968 * 13 11 8 15 15 C 1.37880 * 119.99569 * 173.92014 * 13 11 8 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99951 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47297 * 59.99744 * 17 15 13 19 19 H 1.48503 * 109.47261 * 299.99924 * 17 15 13 20 20 H 1.48500 * 109.47454 * 179.97438 * 17 15 13 21 21 C 1.44134 * 111.97986 * 27.75253 * 11 8 7 22 22 C 1.45033 * 121.93734 * 180.34072 * 6 5 4 23 23 H 1.09002 * 109.46958 * 274.92992 * 1 2 3 24 24 H 1.08995 * 109.47169 * 34.93301 * 1 2 3 25 25 H 1.08997 * 109.47217 * 154.93467 * 1 2 3 26 26 H 1.08801 * 115.15583 * 350.92258 * 3 2 1 27 27 H 1.01740 * 123.94354 * 175.93756 * 4 3 2 28 28 H 1.05559 * 120.24004 * 180.77254 * 5 4 3 29 29 H 1.09000 * 109.46855 * 184.86095 * 10 8 7 30 30 H 1.08999 * 109.47116 * 304.86118 * 10 8 7 31 31 H 1.08999 * 109.47051 * 64.86091 * 10 8 7 32 32 H 0.97006 * 119.99995 * 359.97438 * 16 15 13 33 33 H 1.09200 * 110.29373 * 54.54382 * 21 11 8 34 34 H 1.11820 * 113.40096 * 174.25394 * 21 11 8 35 35 H 1.07492 * 111.27465 * 34.95185 * 22 6 5 36 36 H 1.09623 * 113.78247 * 273.43825 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4411 0.0000 0.0000 3 6 2.1692 1.2151 0.0000 4 6 3.5188 1.3033 0.0190 5 6 4.2193 0.1072 0.2182 6 6 3.6264 -1.1163 0.2649 7 6 2.1781 -1.1630 0.1003 8 6 1.4846 -2.4812 -0.0440 9 1 0.6731 -2.5278 0.6728 10 6 0.9455 -2.6289 -1.5257 11 6 2.3827 -3.7359 0.2346 12 1 2.8180 -4.0342 -0.7999 13 6 1.4762 -4.8230 0.7523 14 1 0.4375 -4.6087 0.9557 15 6 1.9732 -6.0912 0.9660 16 7 3.2380 -6.3524 0.7178 17 14 0.8500 -7.4386 1.6083 18 1 -0.2683 -7.6476 0.6538 19 1 0.3042 -7.0396 2.9305 20 1 1.6209 -8.6998 1.7507 21 6 3.4517 -3.4404 1.1552 22 6 4.3893 -2.3308 0.4807 23 1 -0.3633 0.0883 1.0239 24 1 -0.3633 0.8425 -0.5884 25 1 -0.3633 -0.9308 -0.4354 26 1 1.5727 2.1117 -0.1554 27 1 4.0317 2.1799 -0.0410 28 1 5.2742 0.1089 0.2558 29 1 0.3658 -3.5480 -1.6114 30 1 0.3121 -1.7758 -1.7686 31 1 1.7877 -2.6647 -2.2168 32 1 3.8213 -5.6529 0.3839 33 1 3.0508 -3.0116 2.0760 34 1 4.0455 -4.3409 1.4500 35 1 5.2142 -2.1597 1.1484 36 1 4.7965 -2.7664 -0.4391 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260420955.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:04 Heat of formation + Delta-G solvation = 10.774249 kcal Electronic energy + Delta-G solvation = -16291.812297 eV Core-core repulsion = 13932.989076 eV Total energy + Delta-G solvation = -2358.823221 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.63582 -36.13938 -34.12904 -32.58512 -30.25449 -29.22511 -26.82107 -25.87466 -24.00871 -22.21966 -21.36614 -19.88638 -18.40289 -17.02849 -15.68782 -15.12247 -14.94289 -13.77823 -13.74692 -13.40447 -13.21251 -13.01716 -12.45255 -12.37951 -12.24456 -11.83781 -11.56959 -11.16242 -10.99874 -10.83551 -10.80217 -10.58475 -10.39619 -10.10252 -9.94852 -9.82600 -8.98610 -8.34471 -8.27034 -8.04696 -7.86392 -6.28558 -4.04603 1.73650 1.76329 3.44323 3.45202 3.63982 3.99962 4.53843 5.10017 5.15658 5.36500 5.44093 5.56592 5.63006 5.66911 5.79997 5.83118 5.90979 6.03395 6.04436 6.14639 6.19355 6.27736 6.32984 6.51217 6.61495 6.64921 6.74852 6.81053 6.86866 6.90936 7.03697 7.10222 7.33128 7.40703 7.52680 7.74087 8.27371 8.44643 8.89723 9.66691 11.05602 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.035830 B = 0.008133 C = 0.007073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.275545 B = 3442.104095 C = 3957.546063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.097 4.097 3 C -0.127 4.127 4 C -0.118 4.118 5 C -0.142 4.142 6 C -0.051 4.051 7 C -0.051 4.051 8 C -0.059 4.059 9 H 0.072 0.928 10 C -0.129 4.129 11 C 0.046 3.954 12 H 0.006 0.994 13 C -0.590 4.590 14 H 0.050 0.950 15 C 0.020 3.980 16 N -0.915 5.915 17 Si 1.064 2.936 18 H -0.289 1.289 19 H -0.289 1.289 20 H -0.283 1.283 21 C -0.096 4.096 22 C -0.102 4.102 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.116 0.884 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.274 0.726 33 H 0.039 0.961 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.566 11.617 -1.645 11.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.136 4.136 5 C -0.160 4.160 6 C -0.051 4.051 7 C -0.051 4.051 8 C -0.077 4.077 9 H 0.091 0.909 10 C -0.186 4.186 11 C 0.028 3.972 12 H 0.024 0.976 13 C -0.628 4.628 14 H 0.068 0.932 15 C -0.184 4.184 16 N -0.553 5.553 17 Si 0.892 3.108 18 H -0.215 1.215 19 H -0.215 1.215 20 H -0.208 1.208 21 C -0.134 4.134 22 C -0.139 4.139 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.098 0.902 26 H 0.118 0.882 27 H 0.135 0.865 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.614 9.992 -1.226 10.196 hybrid contribution 0.158 1.790 -0.403 1.841 sum -1.457 11.782 -1.629 11.983 Atomic orbital electron populations 1.19605 0.92300 1.03276 1.02082 1.19041 0.95600 0.92393 1.02708 1.21072 0.94631 0.96953 1.01905 1.19441 0.93857 0.97400 1.02922 1.20490 0.99580 0.92824 1.03105 1.19708 0.92931 0.94482 0.98004 1.21628 0.92721 0.95088 0.95685 1.21592 0.99084 0.91075 0.95978 0.90942 1.22678 0.99978 1.00641 0.95299 1.18725 0.92570 0.91420 0.94455 0.97576 1.22016 0.96761 0.96034 1.48018 0.93191 1.25747 0.98287 0.99132 0.95264 1.70814 1.05079 1.37452 1.41929 0.83618 0.74856 0.76039 0.76250 1.21521 1.21546 1.20836 1.21655 0.97183 0.96407 0.98149 1.20482 0.98056 0.93983 1.01376 0.91358 0.92154 0.90221 0.88232 0.86543 0.88058 0.91887 0.93946 0.93623 0.91374 0.94178 0.90246 0.92193 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.66 9.02 33.03 0.30 -1.36 16 2 C -0.10 -1.63 5.54 -106.36 -0.59 -2.22 16 3 C -0.13 -1.93 9.46 -39.34 -0.37 -2.30 16 4 C -0.12 -1.74 10.32 -39.97 -0.41 -2.15 16 5 C -0.14 -2.33 9.57 -39.70 -0.38 -2.71 16 6 C -0.05 -0.97 5.70 -104.96 -0.60 -1.57 16 7 C -0.05 -0.99 5.26 -102.16 -0.54 -1.52 16 8 C -0.06 -1.24 1.85 -87.27 -0.16 -1.40 16 9 H 0.07 1.59 6.87 -52.28 -0.36 1.23 16 10 C -0.13 -2.46 8.64 40.11 0.35 -2.11 16 11 C 0.05 1.13 1.15 -93.83 -0.11 1.03 16 12 H 0.01 0.17 7.74 -47.59 -0.37 -0.20 16 13 C -0.59 -16.07 8.35 -34.43 -0.29 -16.36 16 14 H 0.05 1.36 7.33 -52.49 -0.38 0.97 16 15 C 0.02 0.55 5.34 -17.82 -0.10 0.45 16 16 N -0.92 -26.86 13.06 55.43 0.72 -26.14 16 17 Si 1.06 24.82 29.90 -169.99 -5.08 19.74 16 18 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C -0.10 -2.22 4.69 -26.80 -0.13 -2.35 16 22 C -0.10 -1.98 5.78 -26.42 -0.15 -2.13 16 23 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.06 0.72 8.06 -51.93 -0.42 0.30 16 25 H 0.08 1.18 4.76 -51.93 -0.25 0.93 16 26 H 0.10 1.26 8.06 -52.04 -0.42 0.84 16 27 H 0.12 1.40 7.51 -55.73 -0.42 0.98 16 28 H 0.10 1.48 7.81 -53.80 -0.42 1.06 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.04 0.69 5.87 -51.93 -0.30 0.39 16 31 H 0.04 0.87 7.95 -51.93 -0.41 0.46 16 32 H 0.27 7.90 5.53 -40.82 -0.23 7.68 16 33 H 0.04 0.94 8.16 -51.82 -0.42 0.52 16 34 H 0.08 1.99 6.05 -50.29 -0.30 1.69 16 35 H 0.06 1.05 8.01 -52.77 -0.42 0.63 16 36 H 0.07 1.41 8.18 -51.58 -0.42 0.99 16 LS Contribution 279.11 15.07 4.21 4.21 Total: -1.00 -28.98 279.11 -8.52 -37.50 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -5.19 Total: 1.40 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: -3.18 Total: -36.71 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.72 Total: -26.14 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.08 Total: 19.74 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.98 -8.52 -37.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260420955.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.271 kcal (2) G-P(sol) polarization free energy of solvation -28.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds