Wall clock time and date at job start Mon Mar 30 2020 03:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.44109 * 1 3 3 C 1.41652 * 120.93109 * 2 1 4 4 C 1.35267 * 124.66778 * 179.02057 * 3 2 1 5 5 C 1.40030 * 116.44638 * 351.82061 * 4 3 2 6 6 C 1.36045 * 123.71918 * 6.29709 * 5 4 3 7 7 C 1.38052 * 122.26636 * 175.07000 * 2 1 3 8 8 C 1.49648 * 119.18722 * 11.34626 * 7 2 1 9 9 H 1.08367 * 108.72994 * 304.81621 * 8 7 2 10 10 C 1.58360 * 109.27677 * 66.23424 * 8 7 2 11 11 C 1.56794 * 114.97764 * 186.08930 * 8 7 2 12 12 H 1.16132 * 105.18855 * 268.17606 * 11 8 7 13 13 C 1.50719 * 107.07952 * 150.88182 * 11 8 7 14 14 H 1.07995 * 120.00498 * 353.91968 * 13 11 8 15 15 C 1.37880 * 119.99569 * 173.92014 * 13 11 8 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99951 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47297 * 59.99744 * 17 15 13 19 19 H 1.48503 * 109.47261 * 299.99924 * 17 15 13 20 20 H 1.48500 * 109.47454 * 179.97438 * 17 15 13 21 21 C 1.44134 * 111.97986 * 27.75253 * 11 8 7 22 22 C 1.45033 * 121.93734 * 180.34072 * 6 5 4 23 23 H 1.09002 * 109.46958 * 274.92992 * 1 2 3 24 24 H 1.08995 * 109.47169 * 34.93301 * 1 2 3 25 25 H 1.08997 * 109.47217 * 154.93467 * 1 2 3 26 26 H 1.08801 * 115.15583 * 350.92258 * 3 2 1 27 27 H 1.01740 * 123.94354 * 175.93756 * 4 3 2 28 28 H 1.05559 * 120.24004 * 180.77254 * 5 4 3 29 29 H 1.09000 * 109.46855 * 184.86095 * 10 8 7 30 30 H 1.08999 * 109.47116 * 304.86118 * 10 8 7 31 31 H 1.08999 * 109.47051 * 64.86091 * 10 8 7 32 32 H 0.97006 * 119.99995 * 359.97438 * 16 15 13 33 33 H 1.09200 * 110.29373 * 54.54382 * 21 11 8 34 34 H 1.11820 * 113.40096 * 174.25394 * 21 11 8 35 35 H 1.07492 * 111.27465 * 34.95185 * 22 6 5 36 36 H 1.09623 * 113.78247 * 273.43825 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4411 0.0000 0.0000 3 6 2.1692 1.2151 0.0000 4 6 3.5188 1.3033 0.0190 5 6 4.2193 0.1072 0.2182 6 6 3.6264 -1.1163 0.2649 7 6 2.1781 -1.1630 0.1003 8 6 1.4846 -2.4812 -0.0440 9 1 0.6731 -2.5278 0.6728 10 6 0.9455 -2.6289 -1.5257 11 6 2.3827 -3.7359 0.2346 12 1 2.8180 -4.0342 -0.7999 13 6 1.4762 -4.8230 0.7523 14 1 0.4375 -4.6087 0.9557 15 6 1.9732 -6.0912 0.9660 16 7 3.2380 -6.3524 0.7178 17 14 0.8500 -7.4386 1.6083 18 1 -0.2683 -7.6476 0.6538 19 1 0.3042 -7.0396 2.9305 20 1 1.6209 -8.6998 1.7507 21 6 3.4517 -3.4404 1.1552 22 6 4.3893 -2.3308 0.4807 23 1 -0.3633 0.0883 1.0239 24 1 -0.3633 0.8425 -0.5884 25 1 -0.3633 -0.9308 -0.4354 26 1 1.5727 2.1117 -0.1554 27 1 4.0317 2.1799 -0.0410 28 1 5.2742 0.1089 0.2558 29 1 0.3658 -3.5480 -1.6114 30 1 0.3121 -1.7758 -1.7686 31 1 1.7877 -2.6647 -2.2168 32 1 3.8213 -5.6529 0.3839 33 1 3.0508 -3.0116 2.0760 34 1 4.0455 -4.3409 1.4500 35 1 5.2142 -2.1597 1.1484 36 1 4.7965 -2.7664 -0.4391 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260420955.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:03 Heat of formation + Delta-G solvation = -3.022029 kcal Electronic energy + Delta-G solvation = -16292.410549 eV Core-core repulsion = 13932.989076 eV Total energy + Delta-G solvation = -2359.421473 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.04172 -37.81754 -35.48195 -34.48453 -31.72473 -30.88077 -28.14467 -27.58573 -25.79158 -23.74276 -23.03557 -21.24799 -20.09035 -19.04678 -16.96777 -16.62899 -16.43611 -15.64080 -15.06951 -14.94364 -14.68399 -14.55171 -14.07920 -13.96184 -13.72918 -13.29974 -13.09098 -12.77029 -12.66489 -12.45737 -12.28218 -12.10315 -12.04424 -11.93230 -11.71441 -11.45248 -10.81759 -10.42573 -10.27609 -9.34604 -9.22791 -8.51541 -6.28978 0.43804 0.48282 1.52483 1.59864 1.78866 2.58294 2.72869 3.20730 3.68145 3.84279 4.03459 4.06017 4.15367 4.27234 4.39172 4.45390 4.52381 4.61900 4.66907 4.71033 4.79918 4.83721 4.92708 5.00249 5.04101 5.12951 5.21436 5.31858 5.34434 5.46556 5.51882 5.65350 5.71884 5.84081 5.88939 6.14833 6.21570 6.29765 6.69166 7.50691 8.82407 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.035830 B = 0.008133 C = 0.007073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.275545 B = 3442.104095 C = 3957.546063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.092 4.092 3 C -0.129 4.129 4 C -0.104 4.104 5 C -0.139 4.139 6 C -0.082 4.082 7 C -0.088 4.088 8 C -0.047 4.047 9 H 0.056 0.944 10 C -0.122 4.122 11 C 0.045 3.955 12 H -0.027 1.027 13 C -0.603 4.603 14 H 0.046 0.954 15 C -0.030 4.030 16 N -0.940 5.940 17 Si 1.108 2.892 18 H -0.272 1.272 19 H -0.273 1.273 20 H -0.285 1.285 21 C -0.094 4.094 22 C -0.084 4.084 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.068 0.932 26 H 0.135 0.865 27 H 0.149 0.851 28 H 0.118 0.882 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.264 0.736 33 H 0.028 0.972 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.370 14.359 -1.731 14.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.092 4.092 3 C -0.147 4.147 4 C -0.122 4.122 5 C -0.157 4.157 6 C -0.082 4.082 7 C -0.088 4.088 8 C -0.065 4.065 9 H 0.074 0.926 10 C -0.179 4.179 11 C 0.027 3.973 12 H -0.009 1.009 13 C -0.641 4.641 14 H 0.064 0.936 15 C -0.229 4.229 16 N -0.578 5.578 17 Si 0.931 3.069 18 H -0.197 1.197 19 H -0.199 1.199 20 H -0.211 1.211 21 C -0.132 4.132 22 C -0.121 4.121 23 H 0.094 0.906 24 H 0.109 0.891 25 H 0.086 0.914 26 H 0.153 0.847 27 H 0.166 0.834 28 H 0.137 0.863 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.422 12.757 -1.319 13.052 hybrid contribution 0.408 1.043 -0.391 1.187 sum -2.014 13.801 -1.710 14.052 Atomic orbital electron populations 1.19674 0.90853 1.03994 1.03038 1.19361 0.96721 0.92076 1.01054 1.21432 0.95231 0.97423 1.00598 1.19864 0.93864 0.97762 1.00723 1.20729 1.00671 0.92397 1.01917 1.19705 0.93000 0.95036 1.00503 1.21574 0.93277 0.94820 0.99091 1.21345 0.97706 0.90972 0.96507 0.92583 1.22611 0.99901 1.01167 0.94206 1.18679 0.93087 0.92835 0.92674 1.00940 1.22400 0.97026 0.97180 1.47477 0.93618 1.27127 0.98813 1.01829 0.95098 1.70906 1.05947 1.37343 1.43649 0.83040 0.73670 0.73395 0.76791 1.19726 1.19867 1.21065 1.21455 0.97442 0.96592 0.97727 1.20324 0.97620 0.93204 1.00920 0.90586 0.89097 0.91372 0.84745 0.83350 0.86346 0.93511 0.90862 0.94298 0.92417 0.95307 0.93172 0.90471 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.04 9.02 69.31 0.62 -2.42 16 2 C -0.09 -2.82 5.54 -20.99 -0.12 -2.94 16 3 C -0.13 -3.31 9.46 22.43 0.21 -3.10 16 4 C -0.10 -2.60 10.32 22.02 0.23 -2.37 16 5 C -0.14 -4.17 9.57 22.19 0.21 -3.96 16 6 C -0.08 -3.04 5.70 -20.08 -0.11 -3.16 16 7 C -0.09 -3.31 5.26 -18.27 -0.10 -3.41 16 8 C -0.05 -2.02 1.85 -8.62 -0.02 -2.04 16 9 H 0.06 2.53 6.87 -2.72 -0.02 2.51 16 10 C -0.12 -4.71 8.64 73.90 0.64 -4.07 16 11 C 0.05 2.33 1.15 -12.87 -0.01 2.32 16 12 H -0.03 -1.54 7.74 1.69 0.01 -1.53 16 13 C -0.60 -34.17 8.35 25.61 0.21 -33.95 16 14 H 0.05 2.56 7.33 -2.91 -0.02 2.54 16 15 C -0.03 -1.75 5.34 84.66 0.45 -1.30 16 16 N -0.94 -57.49 13.06 21.45 0.28 -57.21 16 17 Si 1.11 50.75 29.90 68.60 2.05 52.80 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 20 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 21 C -0.09 -4.60 4.69 30.55 0.14 -4.45 16 22 C -0.08 -3.32 5.78 30.80 0.18 -3.14 16 23 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.09 1.75 8.06 -2.39 -0.02 1.73 16 25 H 0.07 1.88 4.76 -2.39 -0.01 1.87 16 26 H 0.13 2.57 8.06 -2.49 -0.02 2.55 16 27 H 0.15 2.71 7.51 -5.95 -0.04 2.67 16 28 H 0.12 3.08 7.81 -4.14 -0.03 3.05 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 2.33 5.87 -2.39 -0.01 2.32 16 31 H 0.04 1.52 7.95 -2.39 -0.02 1.50 16 32 H 0.26 16.19 5.53 -92.70 -0.51 15.68 16 33 H 0.03 1.41 8.16 -2.28 -0.02 1.40 16 34 H 0.05 2.69 6.05 -0.85 -0.01 2.68 16 35 H 0.08 2.71 8.01 -3.17 -0.03 2.68 16 36 H 0.07 2.64 8.18 -2.06 -0.02 2.62 16 Total: -1.00 -64.92 279.11 6.19 -58.73 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 1.32 Total: 13.67 kcal Atomic # 6 Polarization: -70.53 SS G_CDS: 2.54 Total: -67.99 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.28 Total: -57.21 kcal Atomic # 14 Polarization: 50.75 SS G_CDS: 2.05 Total: 52.80 kcal Total: -64.92 6.19 -58.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260420955.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.710 kcal (2) G-P(sol) polarization free energy of solvation -64.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds