Wall clock time and date at job start Mon Mar 30 2020 03:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00370 * 2 1 4 4 C 1.52997 * 109.47503 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46886 * 180.02562 * 5 4 3 7 7 H 1.08993 * 110.09935 * 54.29666 * 6 5 4 8 8 O 1.43792 * 110.11015 * 292.70127 * 6 5 4 9 9 C 1.43890 * 107.10282 * 215.74088 * 8 6 5 10 10 C 1.54456 * 105.08682 * 1.70759 * 9 8 6 11 11 H 1.09003 * 110.72574 * 263.27061 * 10 9 8 12 12 C 1.52997 * 110.72960 * 140.14827 * 10 9 8 13 13 C 1.50711 * 109.46811 * 175.00167 * 12 10 9 14 14 H 1.07999 * 120.00073 * 359.97438 * 13 12 10 15 15 C 1.37875 * 119.99759 * 180.02562 * 13 12 10 16 16 N 1.31507 * 119.99990 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99969 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47530 * 90.00117 * 17 15 13 19 19 H 1.48503 * 109.47092 * 210.00005 * 17 15 13 20 20 H 1.48499 * 109.46953 * 329.99477 * 17 15 13 21 21 O 1.44383 * 110.11608 * 175.89404 * 6 5 4 22 22 H 1.09001 * 109.46918 * 59.99989 * 1 2 3 23 23 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46857 * 300.00103 * 1 2 3 25 25 H 1.09002 * 109.46880 * 59.99856 * 3 2 1 26 26 H 1.08998 * 109.47064 * 300.00681 * 3 2 1 27 27 H 1.09002 * 109.47153 * 60.00043 * 4 3 2 28 28 H 1.09001 * 109.46832 * 300.00234 * 4 3 2 29 29 H 1.09001 * 109.47194 * 299.99650 * 5 4 3 30 30 H 1.08992 * 109.47399 * 59.99823 * 5 4 3 31 31 H 1.08997 * 110.32442 * 120.60745 * 9 8 6 32 32 H 1.09001 * 110.32100 * 242.80538 * 9 8 6 33 33 H 1.08996 * 109.46916 * 294.99590 * 12 10 9 34 34 H 1.08993 * 109.46862 * 55.00632 * 12 10 9 35 35 H 0.96996 * 120.00384 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 6 5.6830 2.4615 0.0013 7 1 6.0093 1.8368 -0.8302 8 8 6.1347 1.9024 1.2467 9 6 7.3828 2.5415 1.5696 10 6 7.6175 3.5618 0.4340 11 1 8.2764 3.1459 -0.3282 12 6 8.1908 4.8673 0.9890 13 6 8.5230 5.7949 -0.1515 14 1 8.3436 5.4841 -1.1701 15 6 9.0569 7.0398 0.1056 16 7 9.3473 7.8490 -0.8895 17 14 9.3692 7.5764 1.8675 18 1 10.7420 7.1786 2.2702 19 1 9.2321 9.0517 1.9672 20 1 8.3816 6.9257 2.7655 21 8 6.2849 3.7703 -0.0952 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6887 1.8463 0.8900 26 1 1.6886 1.8463 -0.8899 27 1 3.8575 0.6435 -0.8891 28 1 3.8567 0.6438 0.8909 29 1 3.8366 3.1234 -0.8887 30 1 3.8358 3.1230 0.8912 31 1 7.3089 3.0534 2.5290 32 1 8.1889 1.8082 1.5921 33 1 7.4546 5.3400 1.6390 34 1 9.0950 4.6537 1.5588 35 1 9.7226 8.7249 -0.7087 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260421750.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:05 Heat of formation + Delta-G solvation = -153.060258 kcal Electronic energy + Delta-G solvation = -16099.825021 eV Core-core repulsion = 13290.755388 eV Total energy + Delta-G solvation = -2809.069633 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.89744 -38.11122 -34.78852 -34.22594 -33.02489 -31.07624 -28.45295 -26.93249 -25.83793 -23.03237 -22.64239 -21.32182 -20.14146 -17.32799 -16.59202 -16.46355 -16.14765 -15.96231 -15.38018 -14.97266 -14.63686 -14.09687 -13.93967 -12.95998 -12.71006 -12.47501 -12.35095 -12.03161 -11.89910 -11.70068 -11.48119 -11.42689 -11.11787 -10.79766 -10.56584 -10.21247 -9.84365 -9.69679 -9.54730 -9.38220 -9.15764 -8.57648 -6.06183 -4.04633 3.27759 3.36133 3.38712 3.49680 3.98715 4.38683 4.42046 4.87196 4.93266 5.08019 5.10165 5.14503 5.19950 5.27028 5.28627 5.40216 5.43224 5.47637 5.52938 5.70733 5.74714 5.92295 6.03956 6.20145 6.26594 6.29622 6.60817 6.93051 6.97744 7.13224 7.53367 7.71320 8.49259 8.98880 9.54065 11.07267 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.048906 B = 0.004548 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.385781 B = 6155.418733 C = 6331.220800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.062 3.938 4 C -0.113 4.113 5 C -0.115 4.115 6 C 0.224 3.776 7 H 0.068 0.932 8 O -0.393 6.393 9 C 0.020 3.980 10 C 0.065 3.935 11 H 0.077 0.923 12 C -0.008 4.008 13 C -0.516 4.516 14 H 0.075 0.925 15 C 0.067 3.933 16 N -0.901 5.901 17 Si 0.878 3.122 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.265 1.265 21 O -0.355 6.355 22 H 0.040 0.960 23 H 0.084 0.916 24 H 0.040 0.960 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.029 0.971 34 H 0.030 0.970 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.500 -13.284 3.453 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.015 4.015 4 C -0.151 4.151 5 C -0.152 4.152 6 C 0.129 3.871 7 H 0.085 0.915 8 O -0.315 6.315 9 C -0.057 4.057 10 C 0.008 3.992 11 H 0.095 0.905 12 C -0.046 4.046 13 C -0.554 4.554 14 H 0.093 0.907 15 C -0.134 4.134 16 N -0.540 5.540 17 Si 0.705 3.295 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.190 1.190 21 O -0.275 6.275 22 H 0.059 0.941 23 H 0.102 0.898 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.523 -13.215 3.442 18.529 hybrid contribution 0.199 0.655 0.751 1.016 sum -12.324 -12.560 4.193 18.089 Atomic orbital electron populations 1.22725 0.81211 1.02588 0.99964 1.87868 1.19567 1.28400 1.95440 1.22563 0.94219 0.84355 1.00328 1.21379 0.92599 0.97173 1.03912 1.21573 0.92547 0.96997 1.04112 1.24200 0.93247 0.83105 0.86585 0.91470 1.88797 1.38368 1.63536 1.40755 1.24159 0.85844 0.95497 1.00199 1.23880 0.84329 0.97725 0.93285 0.90489 1.19665 0.95727 0.91467 0.97706 1.20991 1.41521 0.99260 0.93607 0.90711 1.25000 0.95024 0.96395 0.96994 1.69900 1.43985 1.08991 1.31097 0.86810 0.78990 0.77983 0.85708 1.20195 1.21210 1.19006 1.89605 1.26742 1.27497 1.83676 0.94124 0.89761 0.94118 0.93150 0.93182 0.91057 0.90276 0.89786 0.90312 0.90190 0.90519 0.95238 0.95173 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.62 10.70 -35.23 -0.38 -5.00 16 3 C 0.06 0.67 5.94 37.16 0.22 0.89 16 4 C -0.11 -1.36 5.50 -26.73 -0.15 -1.51 16 5 C -0.11 -1.58 5.34 -26.73 -0.14 -1.72 16 6 C 0.22 3.75 3.88 37.16 0.14 3.89 16 7 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 8 O -0.39 -6.75 10.94 -59.28 -0.65 -7.40 16 9 C 0.02 0.33 7.66 37.92 0.29 0.62 16 10 C 0.07 1.33 3.31 -25.97 -0.09 1.24 16 11 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 12 C -0.01 -0.20 3.68 -27.88 -0.10 -0.30 16 13 C -0.52 -14.79 9.60 -34.44 -0.33 -15.12 16 14 H 0.07 2.34 7.99 -52.49 -0.42 1.92 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 16 N -0.90 -27.86 13.96 55.43 0.77 -27.08 16 17 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 21 O -0.36 -7.52 11.17 -59.28 -0.66 -8.18 16 22 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 23 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 1.03 7.92 -51.93 -0.41 0.62 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.08 1.31 7.85 -51.93 -0.41 0.90 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.03 0.72 7.20 -51.93 -0.37 0.34 16 34 H 0.03 0.67 7.57 -51.93 -0.39 0.28 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 292.78 15.07 4.41 4.41 Total: -1.00 -32.15 292.78 -6.13 -38.29 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -5.82 Total: -3.07 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 0.86 Total: -8.77 kcal Atomic # 7 Polarization: -27.86 SS G_CDS: 0.77 Total: -27.08 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -1.69 Total: -20.58 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.15 -6.13 -38.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260421750.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.775 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds