Wall clock time and date at job start Mon Mar 30 2020 03:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00370 * 2 1 4 4 C 1.52997 * 109.47503 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46886 * 180.02562 * 5 4 3 7 7 H 1.08993 * 110.09935 * 54.29666 * 6 5 4 8 8 O 1.43792 * 110.11015 * 292.70127 * 6 5 4 9 9 C 1.43890 * 107.10282 * 215.74088 * 8 6 5 10 10 C 1.54456 * 105.08682 * 1.70759 * 9 8 6 11 11 H 1.09003 * 110.72574 * 263.27061 * 10 9 8 12 12 C 1.52997 * 110.72960 * 140.14827 * 10 9 8 13 13 C 1.50711 * 109.46811 * 175.00167 * 12 10 9 14 14 H 1.07999 * 120.00073 * 359.97438 * 13 12 10 15 15 C 1.37875 * 119.99759 * 180.02562 * 13 12 10 16 16 N 1.31507 * 119.99990 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99969 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47530 * 90.00117 * 17 15 13 19 19 H 1.48503 * 109.47092 * 210.00005 * 17 15 13 20 20 H 1.48499 * 109.46953 * 329.99477 * 17 15 13 21 21 O 1.44383 * 110.11608 * 175.89404 * 6 5 4 22 22 H 1.09001 * 109.46918 * 59.99989 * 1 2 3 23 23 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46857 * 300.00103 * 1 2 3 25 25 H 1.09002 * 109.46880 * 59.99856 * 3 2 1 26 26 H 1.08998 * 109.47064 * 300.00681 * 3 2 1 27 27 H 1.09002 * 109.47153 * 60.00043 * 4 3 2 28 28 H 1.09001 * 109.46832 * 300.00234 * 4 3 2 29 29 H 1.09001 * 109.47194 * 299.99650 * 5 4 3 30 30 H 1.08992 * 109.47399 * 59.99823 * 5 4 3 31 31 H 1.08997 * 110.32442 * 120.60745 * 9 8 6 32 32 H 1.09001 * 110.32100 * 242.80538 * 9 8 6 33 33 H 1.08996 * 109.46916 * 294.99590 * 12 10 9 34 34 H 1.08993 * 109.46862 * 55.00632 * 12 10 9 35 35 H 0.96996 * 120.00384 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 6 5.6830 2.4615 0.0013 7 1 6.0093 1.8368 -0.8302 8 8 6.1347 1.9024 1.2467 9 6 7.3828 2.5415 1.5696 10 6 7.6175 3.5618 0.4340 11 1 8.2764 3.1459 -0.3282 12 6 8.1908 4.8673 0.9890 13 6 8.5230 5.7949 -0.1515 14 1 8.3436 5.4841 -1.1701 15 6 9.0569 7.0398 0.1056 16 7 9.3473 7.8490 -0.8895 17 14 9.3692 7.5764 1.8675 18 1 10.7420 7.1786 2.2702 19 1 9.2321 9.0517 1.9672 20 1 8.3816 6.9257 2.7655 21 8 6.2849 3.7703 -0.0952 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6887 1.8463 0.8900 26 1 1.6886 1.8463 -0.8899 27 1 3.8575 0.6435 -0.8891 28 1 3.8567 0.6438 0.8909 29 1 3.8366 3.1234 -0.8887 30 1 3.8358 3.1230 0.8912 31 1 7.3089 3.0534 2.5290 32 1 8.1889 1.8082 1.5921 33 1 7.4546 5.3400 1.6390 34 1 9.0950 4.6537 1.5588 35 1 9.7226 8.7249 -0.7087 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260421750.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:05 Heat of formation + Delta-G solvation = -175.703270 kcal Electronic energy + Delta-G solvation = -16100.806896 eV Core-core repulsion = 13290.755388 eV Total energy + Delta-G solvation = -2810.051507 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.31689 -38.92946 -36.28099 -35.45867 -34.91640 -32.85281 -29.71447 -28.30370 -26.75493 -24.80574 -23.73143 -22.69897 -21.61442 -19.16399 -18.12644 -17.53494 -17.18770 -17.12012 -16.83394 -16.29089 -15.92068 -15.59165 -14.96619 -14.75487 -14.21268 -13.94112 -13.64834 -13.59473 -13.22927 -12.93240 -12.86155 -12.56931 -12.35512 -11.99666 -11.91870 -11.83008 -11.65806 -11.40005 -11.03302 -10.78550 -10.63437 -10.60631 -8.29348 -6.34365 1.36515 1.39715 1.50934 2.36144 2.51837 2.73589 3.03950 3.20052 3.65655 3.87132 3.92144 3.98665 4.12296 4.21707 4.35274 4.43331 4.51604 4.54157 4.57581 4.60930 4.64671 4.78007 4.83191 4.86582 5.01108 5.09109 5.23385 5.29216 5.34852 5.58853 6.08816 6.22891 6.24633 6.71455 7.28515 8.87861 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.048906 B = 0.004548 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.385781 B = 6155.418733 C = 6331.220800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.063 3.937 4 C -0.104 4.104 5 C -0.109 4.109 6 C 0.218 3.782 7 H 0.080 0.920 8 O -0.396 6.396 9 C 0.028 3.972 10 C 0.060 3.940 11 H 0.074 0.926 12 C -0.005 4.005 13 C -0.528 4.528 14 H 0.027 0.973 15 C 0.002 3.998 16 N -0.952 5.952 17 Si 0.954 3.046 18 H -0.259 1.259 19 H -0.286 1.286 20 H -0.246 1.246 21 O -0.390 6.390 22 H 0.050 0.950 23 H 0.097 0.903 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.026 0.974 34 H 0.053 0.947 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.091 -14.319 5.421 20.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.014 4.014 4 C -0.142 4.142 5 C -0.146 4.146 6 C 0.123 3.877 7 H 0.097 0.903 8 O -0.317 6.317 9 C -0.048 4.048 10 C 0.003 3.997 11 H 0.092 0.908 12 C -0.043 4.043 13 C -0.566 4.566 14 H 0.046 0.954 15 C -0.194 4.194 16 N -0.593 5.593 17 Si 0.776 3.224 18 H -0.183 1.183 19 H -0.211 1.211 20 H -0.170 1.170 21 O -0.311 6.311 22 H 0.069 0.931 23 H 0.116 0.884 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.126 0.874 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.127 -14.283 5.411 20.140 hybrid contribution 0.333 0.941 0.015 0.999 sum -12.794 -13.342 5.427 19.265 Atomic orbital electron populations 1.22933 0.79463 1.03850 1.00869 1.87822 1.21548 1.28757 1.95631 1.22532 0.93236 0.84425 1.01171 1.21260 0.93602 0.95724 1.03568 1.21549 0.90651 0.98207 1.04223 1.24519 0.94715 0.81581 0.86854 0.90284 1.88789 1.38563 1.63460 1.40911 1.24162 0.86620 0.95273 0.98768 1.23804 0.84230 0.97075 0.94639 0.90832 1.19594 0.96640 0.92056 0.95971 1.21287 1.41376 1.00640 0.93281 0.95449 1.26054 0.94650 0.96337 1.02395 1.70069 1.45423 1.09687 1.34078 0.85611 0.80021 0.77442 0.79286 1.18319 1.21140 1.16957 1.89568 1.27180 1.30208 1.84127 0.93140 0.88436 0.93271 0.92566 0.92100 0.90725 0.91250 0.89163 0.90728 0.89331 0.87432 0.95558 0.92926 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 11.01 113.37 1.25 1.61 16 2 O -0.42 -9.14 10.70 -148.98 -1.59 -10.73 16 3 C 0.06 1.25 5.94 71.98 0.43 1.68 16 4 C -0.10 -2.35 5.50 30.59 0.17 -2.18 16 5 C -0.11 -2.87 5.34 30.59 0.16 -2.71 16 6 C 0.22 7.07 3.88 71.98 0.28 7.35 16 7 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 8 O -0.40 -12.78 10.94 -125.99 -1.38 -14.16 16 9 C 0.03 0.87 7.66 72.48 0.56 1.43 16 10 C 0.06 2.39 3.31 31.09 0.10 2.49 16 11 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 12 C -0.01 -0.25 3.68 29.85 0.11 -0.14 16 13 C -0.53 -30.92 9.60 25.60 0.25 -30.68 16 14 H 0.03 1.80 7.99 -2.91 -0.02 1.77 16 15 C 0.00 0.13 5.47 84.66 0.46 0.59 16 16 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 17 Si 0.95 43.71 27.47 68.60 1.88 45.59 16 18 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 19 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 20 H -0.25 -10.43 6.54 99.48 0.65 -9.78 16 21 O -0.39 -16.51 11.17 -125.99 -1.41 -17.92 16 22 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 23 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.07 1.71 7.92 -2.39 -0.02 1.69 16 29 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.09 2.62 7.85 -2.39 -0.02 2.60 16 32 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.03 1.23 7.20 -2.39 -0.02 1.22 16 34 H 0.05 2.21 7.57 -2.39 -0.02 2.19 16 35 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -70.28 292.78 2.55 -67.73 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 0.98 Total: 10.15 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 3.76 Total: -20.56 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: 0.30 Total: -60.09 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -4.38 Total: -42.81 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.59 kcal Total: -70.28 2.55 -67.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260421750.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.977 kcal (2) G-P(sol) polarization free energy of solvation -70.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds