Wall clock time and date at job start Mon Mar 30 2020 03:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.63055 * 2 1 4 4 C 1.53006 * 109.47481 * 58.93533 * 3 2 1 5 5 C 1.52999 * 109.46997 * 180.02562 * 4 3 2 6 6 O 1.42905 * 109.46728 * 180.02562 * 5 4 3 7 7 O 1.43754 * 109.62728 * 120.38910 * 2 1 3 8 8 C 1.44784 * 104.81603 * 95.41858 * 7 2 1 9 9 C 1.54916 * 101.72240 * 36.09795 * 8 7 2 10 10 H 1.09006 * 110.69497 * 82.83642 * 9 8 7 11 11 C 1.52994 * 110.69748 * 205.86838 * 9 8 7 12 12 C 1.50705 * 109.47044 * 184.99879 * 11 9 8 13 13 H 1.08000 * 119.99757 * 0.02562 * 12 11 9 14 14 C 1.37882 * 119.99940 * 180.02562 * 12 11 9 15 15 N 1.31512 * 119.99681 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 119.99996 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47255 * 60.00134 * 16 14 12 18 18 H 1.48501 * 109.47344 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47281 * 299.99997 * 16 14 12 20 20 O 1.43364 * 109.51100 * 239.67854 * 2 1 3 21 21 H 1.09005 * 109.47006 * 60.00052 * 1 2 3 22 22 H 1.08996 * 109.47252 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47241 * 300.00088 * 1 2 3 24 24 H 1.09000 * 109.46925 * 298.93748 * 3 2 1 25 25 H 1.08996 * 109.47340 * 178.94056 * 3 2 1 26 26 H 1.09000 * 109.46866 * 60.00179 * 4 3 2 27 27 H 1.09001 * 109.46611 * 300.00296 * 4 3 2 28 28 H 1.09000 * 109.47486 * 60.00167 * 5 4 3 29 29 H 1.09001 * 109.47362 * 299.99445 * 5 4 3 30 30 H 0.96696 * 114.00036 * 179.97438 * 6 5 4 31 31 H 1.08997 * 110.98135 * 154.20754 * 8 7 2 32 32 H 1.08998 * 110.97695 * 277.95622 * 8 7 2 33 33 H 1.09001 * 109.47407 * 305.00297 * 11 9 8 34 34 H 1.09004 * 109.46798 * 65.00582 * 11 9 8 35 35 H 0.97006 * 119.99785 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4410 0.0000 4 6 1.5143 2.1715 1.2356 5 6 2.0278 3.6128 1.2352 6 8 1.5335 4.2948 2.3896 7 8 2.0129 -0.6850 1.1680 8 6 2.2617 -2.0409 0.7256 9 6 2.7837 -1.8112 -0.7148 10 1 3.8466 -1.5698 -0.7054 11 6 2.5177 -3.0387 -1.5885 12 6 3.1431 -2.8352 -2.9444 13 1 3.6772 -1.9219 -3.1611 14 6 3.0333 -3.8150 -3.9083 15 7 2.3825 -4.9269 -3.6444 16 14 3.8091 -3.5631 -5.5887 17 1 5.2740 -3.3742 -5.4345 18 1 3.5508 -4.7545 -6.4368 19 1 3.2199 -2.3608 -6.2308 20 8 2.0088 -0.6822 -1.1665 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.6977 1.9502 -0.8994 25 1 3.1338 1.4381 0.0190 26 1 1.8605 1.6623 2.1350 27 1 0.4244 2.1744 1.2165 28 1 1.6812 4.1218 0.3358 29 1 3.1176 3.6102 1.2541 30 1 1.8203 5.2160 2.4550 31 1 3.0207 -2.5201 1.3439 32 1 1.3411 -2.6244 0.7192 33 1 2.9509 -3.9210 -1.1172 34 1 1.4425 -3.1781 -1.7015 35 1 2.3049 -5.6161 -4.3227 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260448695.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:55 Heat of formation + Delta-G solvation = -184.386249 kcal Electronic energy + Delta-G solvation = -16627.879657 eV Core-core repulsion = 13817.451628 eV Total energy + Delta-G solvation = -2810.428030 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.56197 -38.09740 -36.31754 -35.55561 -34.89882 -32.48113 -30.51078 -28.36224 -27.05362 -25.11006 -23.22678 -22.34247 -21.35492 -18.68777 -18.31209 -17.85665 -17.35910 -16.82050 -16.62004 -15.87775 -15.58138 -15.06686 -14.51619 -14.23104 -14.12406 -13.96435 -13.63566 -13.44081 -13.17711 -13.08169 -12.78617 -12.72461 -12.42957 -12.34569 -11.98470 -11.95129 -11.62662 -11.19463 -10.96952 -10.84153 -10.59368 -10.42003 -8.21440 -6.30739 1.39954 1.42921 1.50891 2.40872 2.50482 2.93690 3.13258 3.46375 3.75425 3.80319 3.90911 4.04750 4.16698 4.23471 4.40234 4.43703 4.53237 4.61726 4.67563 4.68768 4.76952 4.81260 4.97967 5.06434 5.08438 5.28207 5.33465 5.35091 5.55661 5.74421 6.17235 6.32802 6.80504 6.92521 7.36927 8.90217 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.042214 B = 0.005516 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.132723 B = 5075.223412 C = 5423.126772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.238 3.762 3 C -0.110 4.110 4 C -0.111 4.111 5 C 0.078 3.922 6 O -0.595 6.595 7 O -0.382 6.382 8 C 0.025 3.975 9 C 0.066 3.934 10 H 0.072 0.928 11 C 0.030 3.970 12 C -0.534 4.534 13 H 0.054 0.946 14 C 0.003 3.997 15 N -0.931 5.931 16 Si 0.963 3.037 17 H -0.265 1.265 18 H -0.281 1.281 19 H -0.272 1.272 20 O -0.389 6.389 21 H 0.078 0.922 22 H 0.049 0.951 23 H 0.092 0.908 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.398 0.602 31 H 0.127 0.873 32 H 0.072 0.928 33 H 0.022 0.978 34 H -0.001 1.001 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.869 14.466 9.122 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.162 3.838 3 C -0.148 4.148 4 C -0.148 4.148 5 C 0.000 4.000 6 O -0.404 6.404 7 O -0.303 6.303 8 C -0.052 4.052 9 C 0.009 3.991 10 H 0.090 0.910 11 C -0.007 4.007 12 C -0.572 4.572 13 H 0.072 0.928 14 C -0.194 4.194 15 N -0.572 5.572 16 Si 0.788 3.212 17 H -0.190 1.190 18 H -0.206 1.206 19 H -0.197 1.197 20 O -0.311 6.311 21 H 0.096 0.904 22 H 0.068 0.932 23 H 0.111 0.889 24 H 0.109 0.891 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.248 0.752 31 H 0.145 0.855 32 H 0.090 0.910 33 H 0.041 0.959 34 H 0.017 0.983 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.208 13.886 9.159 16.678 hybrid contribution 0.515 -0.019 -1.099 1.213 sum -0.693 13.867 8.060 16.054 Atomic orbital electron populations 1.22411 0.93444 1.02816 1.03937 1.23606 0.93679 0.91589 0.74953 1.21710 1.01593 0.91853 0.99616 1.21401 1.01655 0.94413 0.97345 1.22160 0.97705 0.92165 0.87939 1.86419 1.77130 1.30639 1.46193 1.89129 1.86236 1.22296 1.32592 1.24488 1.01870 0.84334 0.94467 1.23814 0.95083 0.87033 0.93194 0.91013 1.19083 0.96030 0.91378 0.94258 1.21444 1.34454 1.02582 0.98753 0.92785 1.25886 0.95850 0.94789 1.02921 1.70059 1.43161 1.07963 1.35970 0.85525 0.79225 0.77614 0.78842 1.19026 1.20576 1.19722 1.88960 1.70143 1.42172 1.29813 0.90355 0.93166 0.88942 0.89140 0.91222 0.91967 0.90720 0.92094 0.92876 0.75211 0.85518 0.91020 0.95938 0.98277 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.02 8.81 71.98 0.63 -4.38 16 2 C 0.24 8.05 1.14 30.59 0.03 8.08 16 3 C -0.11 -2.99 4.88 30.59 0.15 -2.84 16 4 C -0.11 -2.59 5.08 30.60 0.16 -2.43 16 5 C 0.08 1.45 7.05 71.98 0.51 1.96 16 6 O -0.60 -11.33 13.66 -148.98 -2.04 -13.37 16 7 O -0.38 -13.04 10.40 -126.22 -1.31 -14.36 16 8 C 0.02 0.86 7.36 72.64 0.53 1.39 16 9 C 0.07 2.82 3.57 31.25 0.11 2.93 16 10 H 0.07 3.04 8.14 -2.38 -0.02 3.02 16 11 C 0.03 1.55 4.74 29.85 0.14 1.70 16 12 C -0.53 -30.84 9.04 25.60 0.23 -30.60 16 13 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 14 C 0.00 0.20 5.46 84.66 0.46 0.66 16 15 N -0.93 -56.27 13.29 21.45 0.28 -55.99 16 16 Si 0.96 44.70 29.54 68.60 2.03 46.72 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 20 O -0.39 -16.76 10.50 -126.22 -1.33 -18.08 16 21 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 22 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.09 2.31 6.42 -2.39 -0.02 2.29 16 24 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.06 1.65 7.73 -2.39 -0.02 1.63 16 27 H 0.07 1.70 6.42 -2.39 -0.02 1.69 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 30 H 0.40 3.53 9.12 -74.06 -0.68 2.85 16 31 H 0.13 3.71 8.14 -2.39 -0.02 3.69 16 32 H 0.07 2.50 8.05 -2.39 -0.02 2.48 16 33 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 35 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 Total: -1.00 -68.38 291.03 0.99 -67.39 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.39 Total: 11.23 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 2.96 Total: -23.54 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.28 Total: -55.99 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -4.67 Total: -45.81 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -68.38 0.99 -67.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260448695.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.001 kcal (2) G-P(sol) polarization free energy of solvation -68.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds