Wall clock time and date at job start Mon Mar 30 2020 03:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99831 * 2 1 4 4 H 1.48500 * 109.46855 * 269.99441 * 3 2 1 5 5 H 1.48499 * 109.47326 * 29.99771 * 3 2 1 6 6 H 1.48497 * 109.46885 * 149.99643 * 3 2 1 7 7 C 1.37871 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00081 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.47001 * 179.97438 * 9 7 2 11 11 C 1.38253 * 119.97289 * 269.72486 * 10 9 7 12 12 C 1.38301 * 120.05593 * 179.79543 * 11 10 9 13 13 C 1.38384 * 119.61256 * 0.44403 * 12 11 10 14 14 C 1.37039 * 120.33301 * 359.78641 * 13 12 11 15 15 C 1.38296 * 119.96823 * 89.99778 * 10 9 7 16 16 C 1.51463 * 120.16736 * 180.02562 * 14 13 12 17 17 C 1.52993 * 108.48339 * 289.27216 * 16 14 13 18 18 C 1.51598 * 110.93941 * 85.56393 * 17 16 14 19 19 C 1.51589 * 114.43294 * 291.89146 * 18 17 16 20 20 C 1.51463 * 119.53022 * 179.80627 * 13 12 11 21 21 H 0.96998 * 119.99944 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46978 * 60.00053 * 9 7 2 23 23 H 1.09000 * 109.46976 * 299.99298 * 9 7 2 24 24 H 1.08007 * 119.97291 * 359.97438 * 11 10 9 25 25 H 1.07995 * 120.19034 * 180.23584 * 12 11 10 26 26 H 1.08004 * 120.18903 * 0.03071 * 15 10 9 27 27 H 1.09001 * 109.63397 * 48.97106 * 16 14 13 28 28 H 1.09002 * 109.63795 * 169.58217 * 16 14 13 29 29 H 1.09003 * 109.17181 * 325.19887 * 17 16 14 30 30 H 1.08994 * 109.15343 * 205.92365 * 17 16 14 31 31 H 1.09004 * 108.49154 * 170.61074 * 18 17 16 32 32 H 1.09001 * 108.48797 * 53.17294 * 18 17 16 33 33 H 1.09003 * 109.17940 * 307.76565 * 19 18 17 34 34 H 1.08999 * 109.18003 * 188.51803 * 19 18 17 35 35 H 1.09002 * 109.64154 * 10.31904 * 20 13 12 36 36 H 1.09001 * 109.64270 * 130.93068 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6748 -4.1733 -1.1971 12 6 3.5768 -5.2217 -1.1991 13 6 4.0228 -5.7424 0.0030 14 6 3.5787 -5.2214 1.1901 15 6 2.6793 -4.1697 1.1986 16 6 4.0698 -5.7938 2.5036 17 6 3.4560 -7.1831 2.6871 18 6 4.2912 -8.2404 1.9923 19 6 4.2810 -8.1532 0.4790 20 6 5.0072 -6.8934 -0.0014 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6241 -2.5567 0.8904 24 1 2.3196 -3.7654 -2.1319 25 1 3.9283 -5.6339 -2.1334 26 1 2.3297 -3.7615 2.1354 27 1 5.1567 -5.8731 2.4850 28 1 3.7608 -5.1458 3.3239 29 1 2.4501 -7.1883 2.2672 30 1 3.4010 -7.4121 3.7512 31 1 3.9188 -9.2223 2.2846 32 1 5.3213 -8.1487 2.3370 33 1 3.2491 -8.1276 0.1288 34 1 4.7768 -9.0318 0.0663 35 1 5.3828 -7.0505 -1.0126 36 1 5.8363 -6.6691 0.6697 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260451761.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:55 Heat of formation + Delta-G solvation = -15.129284 kcal Electronic energy + Delta-G solvation = -15618.630940 eV Core-core repulsion = 13258.684457 eV Total energy + Delta-G solvation = -2359.946483 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.60080 -36.39998 -33.35033 -32.65034 -31.31552 -29.50374 -27.48226 -25.05401 -23.75854 -22.32534 -21.42279 -20.20733 -18.87853 -16.30789 -15.74415 -15.55701 -14.63027 -14.36432 -14.06341 -13.64265 -13.57932 -13.02505 -12.68041 -12.40417 -12.29100 -11.79702 -11.55402 -11.36731 -11.15966 -10.85971 -10.65471 -10.60660 -10.46369 -10.42648 -10.28955 -10.05304 -9.42710 -9.36885 -8.40734 -8.04311 -7.58628 -6.02492 -4.06178 2.09960 2.17009 3.31305 3.37331 3.41892 4.38783 4.56458 4.77254 4.93133 4.96787 5.23649 5.31789 5.35252 5.48500 5.52231 5.61115 5.74741 5.78876 5.89740 5.96739 6.06937 6.12128 6.17567 6.21652 6.33063 6.34136 6.41935 6.49273 6.73662 6.86431 7.22842 7.25032 7.32355 7.53796 7.81916 7.90577 7.93652 8.34941 8.99231 9.57516 11.07384 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.043490 B = 0.005791 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.669124 B = 4833.897233 C = 4998.565374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.056 0.944 9 C 0.048 3.952 10 C -0.035 4.035 11 C -0.127 4.127 12 C -0.120 4.120 13 C -0.112 4.112 14 C -0.084 4.084 15 C -0.121 4.121 16 C -0.077 4.077 17 C -0.113 4.113 18 C -0.115 4.115 19 C -0.113 4.113 20 C -0.072 4.072 21 H 0.262 0.738 22 H 0.027 0.973 23 H 0.027 0.973 24 H 0.115 0.885 25 H 0.110 0.890 26 H 0.116 0.884 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.063 -14.517 2.441 16.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.548 4.548 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.035 4.035 11 C -0.145 4.145 12 C -0.138 4.138 13 C -0.112 4.112 14 C -0.084 4.084 15 C -0.139 4.139 16 C -0.114 4.114 17 C -0.151 4.151 18 C -0.152 4.152 19 C -0.151 4.151 20 C -0.109 4.109 21 H 0.071 0.929 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.133 0.867 25 H 0.128 0.872 26 H 0.134 0.866 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.907 -14.410 2.452 16.619 hybrid contribution 0.381 1.082 -0.098 1.151 sum 8.288 -13.328 2.354 15.871 Atomic orbital electron populations 1.69963 1.06032 1.26767 1.50669 1.25011 0.94875 0.99230 0.95232 0.86542 0.79845 0.83190 0.78177 1.20589 1.21155 1.19818 1.21069 0.93039 0.89917 1.50784 0.92524 1.18349 0.92611 0.89744 0.98221 1.20666 0.96047 0.94892 0.91921 1.21071 0.98480 0.96690 0.98249 1.20964 0.98701 0.97597 0.96565 1.19304 1.00461 0.98576 0.92823 1.19477 0.98167 0.96671 0.94039 1.21028 0.98307 0.96294 0.98238 1.20727 0.99972 0.95833 0.94842 1.21241 0.99925 0.94211 0.99695 1.21032 1.00165 0.98557 0.95493 1.21274 1.01228 0.97034 0.95533 1.20693 0.96479 0.92744 1.01031 0.92875 0.95449 0.95439 0.86694 0.87222 0.86596 0.91388 0.91347 0.91752 0.92153 0.92785 0.92600 0.91824 0.92331 0.91786 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -14.56 9.09 -34.44 -0.31 -14.87 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.05 1.25 5.10 -29.03 -0.15 1.11 16 10 C -0.04 -0.79 5.07 -104.59 -0.53 -1.32 16 11 C -0.13 -2.57 9.70 -39.55 -0.38 -2.95 16 12 C -0.12 -2.08 9.69 -39.50 -0.38 -2.46 16 13 C -0.11 -1.82 4.98 -104.63 -0.52 -2.34 16 14 C -0.08 -1.43 4.99 -104.63 -0.52 -1.95 16 15 C -0.12 -2.44 9.34 -39.50 -0.37 -2.81 16 16 C -0.08 -1.05 5.45 -27.51 -0.15 -1.20 16 17 C -0.11 -1.34 5.65 -27.44 -0.15 -1.50 16 18 C -0.11 -1.21 5.22 -28.15 -0.15 -1.35 16 19 C -0.11 -1.27 5.65 -27.37 -0.15 -1.42 16 20 C -0.07 -0.91 5.46 -27.43 -0.15 -1.06 16 21 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 22 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 23 H 0.03 0.76 8.09 -51.93 -0.42 0.34 16 24 H 0.11 2.27 8.06 -52.48 -0.42 1.85 16 25 H 0.11 1.61 7.97 -52.49 -0.42 1.19 16 26 H 0.12 2.31 7.97 -52.48 -0.42 1.89 16 27 H 0.07 0.86 6.90 -51.93 -0.36 0.51 16 28 H 0.07 0.92 7.91 -51.93 -0.41 0.51 16 29 H 0.06 0.85 7.85 -51.93 -0.41 0.44 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.54 7.83 -51.93 -0.41 0.14 16 33 H 0.06 0.79 7.85 -51.93 -0.41 0.39 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.74 7.91 -51.93 -0.41 0.33 16 36 H 0.07 0.81 6.91 -51.93 -0.36 0.45 16 LS Contribution 288.82 15.07 4.35 4.35 Total: -1.00 -29.80 288.82 -9.63 -39.42 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -5.67 Total: -1.94 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: -4.02 Total: -32.58 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.74 Total: -26.03 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.80 -9.63 -39.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260451761.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.295 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds