Wall clock time and date at job start Mon Mar 30 2020 03:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99831 * 2 1 4 4 H 1.48500 * 109.46855 * 269.99441 * 3 2 1 5 5 H 1.48499 * 109.47326 * 29.99771 * 3 2 1 6 6 H 1.48497 * 109.46885 * 149.99643 * 3 2 1 7 7 C 1.37871 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00081 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.47001 * 179.97438 * 9 7 2 11 11 C 1.38253 * 119.97289 * 269.72486 * 10 9 7 12 12 C 1.38301 * 120.05593 * 179.79543 * 11 10 9 13 13 C 1.38384 * 119.61256 * 0.44403 * 12 11 10 14 14 C 1.37039 * 120.33301 * 359.78641 * 13 12 11 15 15 C 1.38296 * 119.96823 * 89.99778 * 10 9 7 16 16 C 1.51463 * 120.16736 * 180.02562 * 14 13 12 17 17 C 1.52993 * 108.48339 * 289.27216 * 16 14 13 18 18 C 1.51598 * 110.93941 * 85.56393 * 17 16 14 19 19 C 1.51589 * 114.43294 * 291.89146 * 18 17 16 20 20 C 1.51463 * 119.53022 * 179.80627 * 13 12 11 21 21 H 0.96998 * 119.99944 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46978 * 60.00053 * 9 7 2 23 23 H 1.09000 * 109.46976 * 299.99298 * 9 7 2 24 24 H 1.08007 * 119.97291 * 359.97438 * 11 10 9 25 25 H 1.07995 * 120.19034 * 180.23584 * 12 11 10 26 26 H 1.08004 * 120.18903 * 0.03071 * 15 10 9 27 27 H 1.09001 * 109.63397 * 48.97106 * 16 14 13 28 28 H 1.09002 * 109.63795 * 169.58217 * 16 14 13 29 29 H 1.09003 * 109.17181 * 325.19887 * 17 16 14 30 30 H 1.08994 * 109.15343 * 205.92365 * 17 16 14 31 31 H 1.09004 * 108.49154 * 170.61074 * 18 17 16 32 32 H 1.09001 * 108.48797 * 53.17294 * 18 17 16 33 33 H 1.09003 * 109.17940 * 307.76565 * 19 18 17 34 34 H 1.08999 * 109.18003 * 188.51803 * 19 18 17 35 35 H 1.09002 * 109.64154 * 10.31904 * 20 13 12 36 36 H 1.09001 * 109.64270 * 130.93068 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6748 -4.1733 -1.1971 12 6 3.5768 -5.2217 -1.1991 13 6 4.0228 -5.7424 0.0030 14 6 3.5787 -5.2214 1.1901 15 6 2.6793 -4.1697 1.1986 16 6 4.0698 -5.7938 2.5036 17 6 3.4560 -7.1831 2.6871 18 6 4.2912 -8.2404 1.9923 19 6 4.2810 -8.1532 0.4790 20 6 5.0072 -6.8934 -0.0014 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6241 -2.5567 0.8904 24 1 2.3196 -3.7654 -2.1319 25 1 3.9283 -5.6339 -2.1334 26 1 2.3297 -3.7615 2.1354 27 1 5.1567 -5.8731 2.4850 28 1 3.7608 -5.1458 3.3239 29 1 2.4501 -7.1883 2.2672 30 1 3.4010 -7.4121 3.7512 31 1 3.9188 -9.2223 2.2846 32 1 5.3213 -8.1487 2.3370 33 1 3.2491 -8.1276 0.1288 34 1 4.7768 -9.0318 0.0663 35 1 5.3828 -7.0505 -1.0126 36 1 5.8363 -6.6691 0.6697 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260451761.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:55 Heat of formation + Delta-G solvation = -29.555868 kcal Electronic energy + Delta-G solvation = -15619.256523 eV Core-core repulsion = 13258.684457 eV Total energy + Delta-G solvation = -2360.572066 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.93169 -37.65497 -35.29915 -33.90735 -32.90657 -30.88987 -29.18527 -26.50309 -25.24007 -23.83672 -22.90907 -21.12089 -20.32943 -18.54536 -17.13236 -16.80151 -16.46745 -15.74583 -15.23313 -14.92046 -14.63971 -14.53831 -14.16548 -13.90154 -13.65162 -13.36813 -13.16091 -12.91615 -12.67918 -12.48139 -12.42001 -12.03864 -11.66290 -11.57965 -11.43377 -11.34307 -11.26984 -11.09090 -10.63669 -9.52141 -9.13829 -8.22688 -6.37221 0.60923 0.66614 1.36985 1.38579 1.50265 2.37371 3.00516 3.07036 3.77912 3.92401 4.06191 4.15435 4.18946 4.28941 4.34476 4.51468 4.57348 4.63056 4.80197 4.85367 4.92846 5.01504 5.03249 5.11359 5.22448 5.29026 5.29918 5.34856 5.36596 5.47130 5.49301 5.54613 5.67247 5.76598 5.89623 6.10463 6.12233 6.33846 6.75168 7.31531 8.86430 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.043490 B = 0.005791 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.669124 B = 4833.897233 C = 4998.565374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.530 4.530 8 H 0.052 0.948 9 C 0.058 3.942 10 C -0.070 4.070 11 C -0.145 4.145 12 C -0.115 4.115 13 C -0.104 4.104 14 C -0.081 4.081 15 C -0.138 4.138 16 C -0.076 4.076 17 C -0.111 4.111 18 C -0.116 4.116 19 C -0.112 4.112 20 C -0.070 4.070 21 H 0.266 0.734 22 H 0.000 1.000 23 H -0.001 1.001 24 H 0.108 0.892 25 H 0.143 0.857 26 H 0.105 0.895 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.866 -16.169 2.700 19.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.792 3.208 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.567 4.567 8 H 0.070 0.930 9 C 0.021 3.979 10 C -0.070 4.070 11 C -0.163 4.163 12 C -0.133 4.133 13 C -0.104 4.104 14 C -0.081 4.081 15 C -0.156 4.156 16 C -0.113 4.113 17 C -0.148 4.148 18 C -0.153 4.153 19 C -0.149 4.149 20 C -0.107 4.107 21 H 0.075 0.925 22 H 0.018 0.982 23 H 0.017 0.983 24 H 0.126 0.874 25 H 0.161 0.839 26 H 0.123 0.877 27 H 0.106 0.894 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.712 -16.076 2.711 19.507 hybrid contribution -0.495 1.503 -0.171 1.592 sum 10.217 -14.573 2.540 17.978 Atomic orbital electron populations 1.70089 1.07733 1.28030 1.51255 1.25963 0.95806 1.03215 0.94437 0.85403 0.78542 0.78181 0.78683 1.19509 1.20206 1.19069 1.21359 0.92960 0.91305 1.51110 0.92992 1.18080 0.92921 0.91508 0.95418 1.20380 0.97322 0.95252 0.94010 1.21097 0.99922 0.98202 0.97072 1.21307 0.97197 0.96123 0.98635 1.19849 0.99927 0.98810 0.91835 1.19857 0.96605 0.95160 0.96469 1.21043 0.99785 0.97856 0.96952 1.20821 1.01101 0.96759 0.92595 1.21233 0.98953 0.93504 1.01133 1.21046 1.00792 0.98624 0.94828 1.21275 1.00274 0.97197 0.96152 1.20813 0.95723 0.91439 1.02750 0.92486 0.98177 0.98267 0.87378 0.83940 0.87658 0.89424 0.91621 0.93807 0.90243 0.91196 0.90967 0.93573 0.89726 0.90018 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.71 13.29 21.45 0.28 -57.42 16 2 C 0.00 0.22 5.46 84.65 0.46 0.69 16 3 Si 0.97 45.43 29.54 68.60 2.03 47.46 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.53 -31.66 9.09 25.60 0.23 -31.42 16 8 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 9 C 0.06 3.28 5.10 29.10 0.15 3.43 16 10 C -0.07 -3.31 5.07 -19.85 -0.10 -3.41 16 11 C -0.14 -6.05 9.70 22.29 0.22 -5.84 16 12 C -0.11 -3.82 9.69 22.32 0.22 -3.61 16 13 C -0.10 -3.17 4.98 -19.87 -0.10 -3.27 16 14 C -0.08 -2.71 4.99 -19.87 -0.10 -2.81 16 15 C -0.14 -5.83 9.34 22.32 0.21 -5.62 16 16 C -0.08 -1.91 5.45 30.09 0.16 -1.75 16 17 C -0.11 -2.34 5.65 30.13 0.17 -2.17 16 18 C -0.12 -1.94 5.22 29.67 0.15 -1.78 16 19 C -0.11 -2.04 5.65 30.18 0.17 -1.87 16 20 C -0.07 -1.47 5.46 30.14 0.16 -1.31 16 21 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 22 H 0.00 0.00 8.08 -2.39 -0.02 -0.02 16 23 H 0.00 -0.06 8.09 -2.39 -0.02 -0.08 16 24 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 25 H 0.14 3.75 7.97 -2.91 -0.02 3.73 16 26 H 0.11 4.49 7.97 -2.91 -0.02 4.47 16 27 H 0.09 1.90 6.90 -2.39 -0.02 1.88 16 28 H 0.07 1.68 7.91 -2.39 -0.02 1.67 16 29 H 0.04 1.10 7.85 -2.39 -0.02 1.08 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.07 1.02 7.83 -2.39 -0.02 1.01 16 33 H 0.05 1.02 7.85 -2.39 -0.02 1.00 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 1.47 7.91 -2.39 -0.02 1.45 16 36 H 0.08 1.55 6.91 -2.39 -0.02 1.53 16 Total: -1.00 -67.36 288.82 5.36 -62.01 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 1.03 Total: 8.69 kcal Atomic # 6 Polarization: -62.74 SS G_CDS: 2.01 Total: -60.73 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 0.28 Total: -57.42 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -67.36 5.36 -62.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260451761.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.453 kcal (2) G-P(sol) polarization free energy of solvation -67.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds