Wall clock time and date at job start Mon Mar 30 2020 03:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 110.99924 * 2 1 4 4 C 1.46901 * 110.99979 * 123.95459 * 2 1 3 5 5 C 1.52992 * 109.47315 * 75.78830 * 4 2 1 6 6 H 1.09005 * 109.47453 * 306.30806 * 5 4 2 7 7 C 1.53247 * 109.46339 * 66.29813 * 5 4 2 8 8 S 1.81748 * 108.79662 * 177.65941 * 7 5 4 9 9 C 1.81738 * 102.30387 * 305.45978 * 8 7 5 10 10 C 1.52718 * 108.84584 * 54.42900 * 9 8 7 11 11 N 1.46375 * 109.47273 * 186.31303 * 5 4 2 12 12 C 1.36943 * 119.64092 * 354.91250 * 11 5 4 13 13 H 1.07998 * 120.00027 * 317.91598 * 12 11 5 14 14 C 1.38814 * 119.99878 * 137.92233 * 12 11 5 15 15 N 1.31621 * 120.00173 * 149.00798 * 14 12 11 16 16 Si 1.86798 * 119.99723 * 329.01254 * 14 12 11 17 17 H 1.48507 * 109.46905 * 264.70145 * 16 14 12 18 18 H 1.48492 * 109.47610 * 24.69674 * 16 14 12 19 19 H 1.48500 * 109.47222 * 144.70209 * 16 14 12 20 20 H 1.08998 * 109.47131 * 293.32567 * 1 2 3 21 21 H 1.08998 * 109.47133 * 53.32555 * 1 2 3 22 22 H 1.08998 * 109.46994 * 173.32954 * 1 2 3 23 23 H 1.08993 * 109.46925 * 183.95428 * 3 2 1 24 24 H 1.09002 * 109.47123 * 303.95371 * 3 2 1 25 25 H 1.09000 * 109.47209 * 63.95190 * 3 2 1 26 26 H 1.09001 * 109.47035 * 315.78979 * 4 2 1 27 27 H 1.08992 * 109.46910 * 195.79318 * 4 2 1 28 28 H 1.09000 * 109.57847 * 297.45179 * 7 5 4 29 29 H 1.08994 * 109.58409 * 57.72606 * 7 5 4 30 30 H 1.09001 * 109.58100 * 174.34020 * 9 8 7 31 31 H 1.09004 * 109.58310 * 294.60446 * 9 8 7 32 32 H 1.08997 * 109.33095 * 182.43262 * 10 9 8 33 33 H 1.09000 * 109.32512 * 62.60654 * 10 9 8 34 34 H 0.96991 * 119.99801 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.8477 -2.2627 0.8568 6 1 0.8110 -2.4841 0.6030 7 6 2.7550 -2.6546 -0.3143 8 16 2.6181 -4.4462 -0.5871 9 6 3.0105 -5.1191 1.0549 10 6 2.0829 -4.4785 2.0851 11 7 2.2314 -3.0227 2.0475 12 6 2.7401 -2.3653 3.1358 13 1 3.4573 -1.5695 2.9993 14 6 2.3341 -2.7220 4.4144 15 7 3.1637 -2.5940 5.4281 16 14 0.6101 -3.3838 4.6962 17 1 -0.2844 -2.2737 5.1120 18 1 0.0994 -3.9863 3.4387 19 1 0.6447 -4.4174 5.7619 20 1 -0.3633 0.4069 0.9437 21 1 -0.3633 0.6138 -0.8242 22 1 -0.3633 -1.0207 -0.1194 23 1 3.0827 1.3432 -0.0709 24 1 1.5898 1.9163 -0.8525 25 1 1.7044 1.8723 0.9233 26 1 1.4380 -0.5085 2.0381 27 1 3.0488 -0.5255 1.2812 28 1 2.4417 -2.1231 -1.2129 29 1 3.7875 -2.3967 -0.0787 30 1 2.8644 -6.1993 1.0515 31 1 4.0468 -4.8916 1.3048 32 1 2.3402 -4.8442 3.0791 33 1 1.0510 -4.7443 1.8560 34 1 2.8798 -2.8429 6.3215 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260471372.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:39 Heat of formation + Delta-G solvation = 30.798699 kcal Electronic energy + Delta-G solvation = -15183.206863 eV Core-core repulsion = 12857.155575 eV Total energy + Delta-G solvation = -2326.051288 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.00451 -35.93596 -32.21512 -31.41936 -28.86189 -27.32950 -26.40338 -23.93267 -22.87275 -21.16645 -19.55183 -16.87801 -15.73493 -15.51474 -15.04482 -14.70890 -14.24612 -13.82807 -13.66060 -13.26978 -12.90054 -12.75974 -12.34456 -12.19523 -11.73427 -11.50946 -11.44903 -11.25964 -10.93513 -10.73497 -10.48210 -10.32393 -9.96374 -9.64953 -9.10851 -8.56523 -8.00240 -7.27845 -6.74780 -6.17769 -3.56207 2.48338 3.18298 3.30883 3.42701 3.48854 4.19646 4.47165 4.91880 5.20313 5.42593 5.44184 5.59373 5.66953 5.78584 5.84472 5.87055 5.87573 6.02724 6.07892 6.10897 6.14491 6.26823 6.34409 6.58080 6.61984 6.69322 6.84703 7.36662 7.39523 7.92586 8.30615 8.87775 9.58896 10.02790 10.96912 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.019054 B = 0.013335 C = 0.009293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.137394 B = 2099.250878 C = 3012.163544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.551 5.551 3 C 0.029 3.971 4 C 0.071 3.929 5 C 0.182 3.818 6 H 0.043 0.957 7 C -0.071 4.071 8 S -0.311 6.311 9 C -0.092 4.092 10 C 0.149 3.851 11 N -0.601 5.601 12 C -0.285 4.285 13 H 0.075 0.925 14 C 0.052 3.948 15 N -0.881 5.881 16 Si 0.849 3.151 17 H -0.289 1.289 18 H -0.258 1.258 19 H -0.293 1.293 20 H 0.024 0.976 21 H 0.060 0.940 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.023 0.977 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.301 2.126 -9.203 10.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.276 5.276 3 C -0.120 4.120 4 C -0.058 4.058 5 C 0.074 3.926 6 H 0.061 0.939 7 C -0.221 4.221 8 S -0.084 6.084 9 C -0.242 4.242 10 C 0.022 3.978 11 N -0.325 5.325 12 C -0.413 4.413 13 H 0.092 0.908 14 C -0.151 4.151 15 N -0.519 5.519 16 Si 0.675 3.325 17 H -0.216 1.216 18 H -0.182 1.182 19 H -0.220 1.220 20 H 0.042 0.958 21 H 0.079 0.921 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.042 0.958 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.120 0.880 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.342 1.315 -10.388 10.991 hybrid contribution -0.851 0.649 2.206 2.452 sum -4.192 1.964 -8.181 9.401 Atomic orbital electron populations 1.22400 0.88014 1.02240 0.99782 1.61944 1.07618 1.13301 1.44729 1.22321 1.00615 0.89176 0.99887 1.22198 1.00628 0.92591 0.90351 1.20459 0.95066 0.90627 0.86448 0.93923 1.23887 1.03686 0.91205 1.03328 1.86238 1.93427 1.08823 1.19912 1.23933 1.04357 1.01518 0.94413 1.21231 0.95556 0.84153 0.96887 1.44151 1.74540 1.00523 1.13238 1.18584 1.19964 1.19675 0.83119 0.90757 1.25582 0.97035 0.97033 0.95463 1.70020 1.33778 1.47522 1.00570 0.87227 0.88506 0.78476 0.78253 1.21607 1.18219 1.21975 0.95751 0.92116 0.91281 0.91550 0.92010 0.95846 0.92721 0.90558 0.88002 0.90683 0.89202 0.89982 0.90722 0.94319 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.40 60.07 0.56 0.90 16 2 N -0.55 -8.54 4.51 -251.27 -1.13 -9.67 16 3 C 0.03 0.38 9.51 60.06 0.57 0.95 16 4 C 0.07 1.33 3.31 -3.83 -0.01 1.32 16 5 C 0.18 3.61 2.86 -67.87 -0.19 3.41 16 6 H 0.04 0.87 6.80 -51.93 -0.35 0.52 16 7 C -0.07 -1.29 5.81 37.29 0.22 -1.08 16 8 S -0.31 -5.72 22.30 -107.50 -2.40 -8.12 16 9 C -0.09 -1.72 6.65 37.01 0.25 -1.47 16 10 C 0.15 3.19 4.28 -4.25 -0.02 3.17 16 11 N -0.60 -13.70 2.28 -165.88 -0.38 -14.08 16 12 C -0.29 -7.45 8.14 -15.06 -0.12 -7.57 16 13 H 0.07 2.09 6.98 -52.49 -0.37 1.73 16 14 C 0.05 1.42 4.85 -17.43 -0.08 1.33 16 15 N -0.88 -25.54 13.97 55.49 0.78 -24.77 16 16 Si 0.85 20.76 26.81 -169.99 -4.56 16.20 16 17 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 18 H -0.26 -6.09 5.49 56.52 0.31 -5.78 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H 0.02 0.35 8.03 -51.93 -0.42 -0.07 16 21 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 22 H 0.07 1.00 6.87 -51.93 -0.36 0.65 16 23 H 0.07 0.85 8.07 -51.93 -0.42 0.43 16 24 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 25 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 1.14 7.37 -51.93 -0.38 0.76 16 27 H 0.08 1.49 7.10 -51.93 -0.37 1.12 16 28 H 0.10 1.74 7.87 -51.93 -0.41 1.33 16 29 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.07 1.69 6.13 -51.93 -0.32 1.38 16 33 H 0.04 0.83 7.24 -51.93 -0.38 0.45 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 273.90 15.07 4.13 4.13 Total: -1.00 -27.93 273.90 -7.92 -35.85 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.52 Total: -0.50 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 1.17 Total: 0.96 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -0.74 Total: -48.52 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.56 Total: 16.20 kcal Atomic # 16 Polarization: -5.72 SS G_CDS: -2.40 Total: -8.12 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.93 -7.92 -35.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260471372.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.650 kcal (2) G-P(sol) polarization free energy of solvation -27.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds