Wall clock time and date at job start Mon Mar 30 2020 03:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 110.99924 * 2 1 4 4 C 1.46901 * 110.99979 * 123.95459 * 2 1 3 5 5 C 1.52992 * 109.47315 * 75.78830 * 4 2 1 6 6 H 1.09005 * 109.47453 * 306.30806 * 5 4 2 7 7 C 1.53247 * 109.46339 * 66.29813 * 5 4 2 8 8 S 1.81748 * 108.79662 * 177.65941 * 7 5 4 9 9 C 1.81738 * 102.30387 * 305.45978 * 8 7 5 10 10 C 1.52718 * 108.84584 * 54.42900 * 9 8 7 11 11 N 1.46375 * 109.47273 * 186.31303 * 5 4 2 12 12 C 1.36943 * 119.64092 * 354.91250 * 11 5 4 13 13 H 1.07998 * 120.00027 * 317.91598 * 12 11 5 14 14 C 1.38814 * 119.99878 * 137.92233 * 12 11 5 15 15 N 1.31621 * 120.00173 * 149.00798 * 14 12 11 16 16 Si 1.86798 * 119.99723 * 329.01254 * 14 12 11 17 17 H 1.48507 * 109.46905 * 264.70145 * 16 14 12 18 18 H 1.48492 * 109.47610 * 24.69674 * 16 14 12 19 19 H 1.48500 * 109.47222 * 144.70209 * 16 14 12 20 20 H 1.08998 * 109.47131 * 293.32567 * 1 2 3 21 21 H 1.08998 * 109.47133 * 53.32555 * 1 2 3 22 22 H 1.08998 * 109.46994 * 173.32954 * 1 2 3 23 23 H 1.08993 * 109.46925 * 183.95428 * 3 2 1 24 24 H 1.09002 * 109.47123 * 303.95371 * 3 2 1 25 25 H 1.09000 * 109.47209 * 63.95190 * 3 2 1 26 26 H 1.09001 * 109.47035 * 315.78979 * 4 2 1 27 27 H 1.08992 * 109.46910 * 195.79318 * 4 2 1 28 28 H 1.09000 * 109.57847 * 297.45179 * 7 5 4 29 29 H 1.08994 * 109.58409 * 57.72606 * 7 5 4 30 30 H 1.09001 * 109.58100 * 174.34020 * 9 8 7 31 31 H 1.09004 * 109.58310 * 294.60446 * 9 8 7 32 32 H 1.08997 * 109.33095 * 182.43262 * 10 9 8 33 33 H 1.09000 * 109.32512 * 62.60654 * 10 9 8 34 34 H 0.96991 * 119.99801 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.8477 -2.2627 0.8568 6 1 0.8110 -2.4841 0.6030 7 6 2.7550 -2.6546 -0.3143 8 16 2.6181 -4.4462 -0.5871 9 6 3.0105 -5.1191 1.0549 10 6 2.0829 -4.4785 2.0851 11 7 2.2314 -3.0227 2.0475 12 6 2.7401 -2.3653 3.1358 13 1 3.4573 -1.5695 2.9993 14 6 2.3341 -2.7220 4.4144 15 7 3.1637 -2.5940 5.4281 16 14 0.6101 -3.3838 4.6962 17 1 -0.2844 -2.2737 5.1120 18 1 0.0994 -3.9863 3.4387 19 1 0.6447 -4.4174 5.7619 20 1 -0.3633 0.4069 0.9437 21 1 -0.3633 0.6138 -0.8242 22 1 -0.3633 -1.0207 -0.1194 23 1 3.0827 1.3432 -0.0709 24 1 1.5898 1.9163 -0.8525 25 1 1.7044 1.8723 0.9233 26 1 1.4380 -0.5085 2.0381 27 1 3.0488 -0.5255 1.2812 28 1 2.4417 -2.1231 -1.2129 29 1 3.7875 -2.3967 -0.0787 30 1 2.8644 -6.1993 1.0515 31 1 4.0468 -4.8916 1.3048 32 1 2.3402 -4.8442 3.0791 33 1 1.0510 -4.7443 1.8560 34 1 2.8798 -2.8429 6.3215 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260471372.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:38 Heat of formation + Delta-G solvation = 13.007859 kcal Electronic energy + Delta-G solvation = -15183.978332 eV Core-core repulsion = 12857.155575 eV Total energy + Delta-G solvation = -2326.822757 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.54930 -37.44286 -34.20307 -32.99647 -30.64870 -28.43703 -27.82714 -25.85036 -24.35618 -22.66214 -21.24656 -18.67908 -17.45650 -17.07922 -16.76803 -16.10212 -15.56296 -15.39895 -15.22713 -14.80368 -14.64047 -14.38677 -14.24891 -13.46482 -13.11165 -12.98628 -12.73449 -12.65443 -12.57644 -12.53984 -12.31079 -11.91419 -11.64067 -11.48085 -10.71392 -10.58472 -9.30299 -8.95248 -8.45786 -8.28703 -5.63902 0.98627 1.32811 1.42127 1.51955 1.68082 2.41461 2.76848 3.04644 3.50012 3.93311 4.17342 4.25151 4.29933 4.35119 4.38185 4.49436 4.56146 4.60845 4.74275 4.81168 4.86603 4.88117 5.01394 5.02868 5.05374 5.08689 5.27370 5.88318 6.01796 6.15994 6.23104 6.94707 7.57144 8.02610 8.90159 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.019054 B = 0.013335 C = 0.009293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.137394 B = 2099.250878 C = 3012.163544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.551 5.551 3 C 0.027 3.973 4 C 0.086 3.914 5 C 0.182 3.818 6 H 0.046 0.954 7 C -0.063 4.063 8 S -0.293 6.293 9 C -0.088 4.088 10 C 0.146 3.854 11 N -0.612 5.612 12 C -0.265 4.265 13 H 0.044 0.956 14 C 0.005 3.995 15 N -0.927 5.927 16 Si 0.907 3.093 17 H -0.296 1.296 18 H -0.243 1.243 19 H -0.295 1.295 20 H 0.017 0.983 21 H 0.090 0.910 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.089 0.911 25 H 0.018 0.982 26 H 0.025 0.975 27 H 0.060 0.940 28 H 0.120 0.880 29 H 0.064 0.936 30 H 0.119 0.881 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.492 1.785 -11.215 12.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.275 5.275 3 C -0.121 4.121 4 C -0.044 4.044 5 C 0.074 3.926 6 H 0.063 0.937 7 C -0.213 4.213 8 S -0.066 6.066 9 C -0.238 4.238 10 C 0.019 3.981 11 N -0.336 5.336 12 C -0.395 4.395 13 H 0.062 0.938 14 C -0.194 4.194 15 N -0.569 5.569 16 Si 0.734 3.266 17 H -0.224 1.224 18 H -0.166 1.166 19 H -0.222 1.222 20 H 0.035 0.965 21 H 0.108 0.892 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.108 0.892 25 H 0.037 0.963 26 H 0.043 0.957 27 H 0.078 0.922 28 H 0.138 0.862 29 H 0.083 0.917 30 H 0.137 0.863 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.551 0.968 -12.444 13.285 hybrid contribution -0.445 0.808 2.738 2.889 sum -4.996 1.776 -9.706 11.059 Atomic orbital electron populations 1.22466 0.86837 1.02547 1.00621 1.61969 1.08674 1.14422 1.42446 1.22414 1.00843 0.87974 1.00855 1.21904 0.99342 0.92629 0.90530 1.20550 0.95396 0.90909 0.85711 0.93667 1.23761 1.02578 0.91817 1.03147 1.86203 1.93238 1.08232 1.18963 1.23828 1.02850 1.03166 0.93989 1.21244 0.96506 0.83307 0.97072 1.44297 1.74695 1.01429 1.13219 1.18414 1.18469 1.18411 0.84175 0.93846 1.26051 0.99645 0.98413 0.95340 1.70104 1.35337 1.50403 1.01017 0.86302 0.84291 0.77543 0.78489 1.22360 1.16622 1.22208 0.96465 0.89173 0.91792 0.91500 0.89203 0.96341 0.95665 0.92185 0.86219 0.91743 0.86293 0.91089 0.92346 0.93632 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.40 127.69 1.20 1.80 16 2 N -0.55 -16.08 4.51 -948.88 -4.28 -20.36 16 3 C 0.03 0.66 9.51 127.69 1.21 1.88 16 4 C 0.09 3.18 3.31 86.30 0.29 3.47 16 5 C 0.18 6.99 2.86 45.10 0.13 7.12 16 6 H 0.05 1.76 6.80 -2.38 -0.02 1.74 16 7 C -0.06 -2.18 5.81 72.06 0.42 -1.76 16 8 S -0.29 -10.01 22.30 -56.49 -1.26 -11.27 16 9 C -0.09 -3.12 6.65 71.89 0.48 -2.64 16 10 C 0.15 6.01 4.28 86.31 0.37 6.38 16 11 N -0.61 -27.60 2.28 -678.72 -1.55 -29.15 16 12 C -0.27 -14.10 8.14 84.03 0.68 -13.42 16 13 H 0.04 2.56 6.98 -2.91 -0.02 2.54 16 14 C 0.00 0.26 4.85 84.86 0.41 0.68 16 15 N -0.93 -55.19 13.97 21.65 0.30 -54.89 16 16 Si 0.91 43.28 26.81 68.60 1.84 45.12 16 17 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 18 H -0.24 -10.83 5.49 99.48 0.55 -10.28 16 19 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 20 H 0.02 0.46 8.03 -2.39 -0.02 0.44 16 21 H 0.09 1.80 8.08 -2.39 -0.02 1.78 16 22 H 0.06 1.71 6.87 -2.39 -0.02 1.69 16 23 H 0.07 1.62 8.07 -2.39 -0.02 1.60 16 24 H 0.09 1.71 8.09 -2.39 -0.02 1.69 16 25 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.03 1.07 7.37 -2.39 -0.02 1.05 16 27 H 0.06 2.39 7.10 -2.39 -0.02 2.38 16 28 H 0.12 3.74 7.87 -2.39 -0.02 3.72 16 29 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16 31 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.06 2.60 6.13 -2.39 -0.01 2.58 16 33 H 0.05 1.83 7.24 -2.39 -0.02 1.81 16 34 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -59.35 273.90 1.14 -58.21 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 0.90 Total: 8.84 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 5.19 Total: 3.51 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -5.52 Total: -104.40 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.84 Total: 45.12 kcal Atomic # 16 Polarization: -10.01 SS G_CDS: -1.26 Total: -11.27 kcal Total: -59.35 1.14 -58.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260471372.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.218 kcal (2) G-P(sol) polarization free energy of solvation -59.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds