Wall clock time and date at job start Mon Mar 30 2020 03:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00321 * 2 1 4 4 C 1.52998 * 109.47178 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46759 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.51069 * 305.31821 * 5 4 3 7 7 O 1.43373 * 109.62951 * 65.64056 * 5 4 3 8 8 C 1.44196 * 107.28834 * 120.54703 * 7 5 4 9 9 C 1.54909 * 103.07727 * 21.43462 * 8 7 5 10 10 H 1.08999 * 110.98055 * 82.54581 * 9 8 7 11 11 C 1.53003 * 110.97554 * 206.33398 * 9 8 7 12 12 C 1.50700 * 109.46817 * 178.78921 * 11 9 8 13 13 H 1.08001 * 120.00551 * 359.97438 * 12 11 9 14 14 C 1.37883 * 119.99458 * 179.97438 * 12 11 9 15 15 N 1.31506 * 120.00471 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99661 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46949 * 60.00142 * 16 14 12 18 18 H 1.48496 * 109.47002 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47575 * 300.00436 * 16 14 12 20 20 O 1.43758 * 109.62960 * 184.99860 * 5 4 3 21 21 H 1.09004 * 109.47205 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46721 * 300.00173 * 1 2 3 23 23 H 1.08992 * 109.47177 * 59.99868 * 1 2 3 24 24 H 1.08999 * 109.47199 * 59.99673 * 3 2 1 25 25 H 1.08997 * 109.46903 * 299.99920 * 3 2 1 26 26 H 1.09002 * 109.47103 * 60.00336 * 4 3 2 27 27 H 1.08997 * 109.47255 * 299.99847 * 4 3 2 28 28 H 1.08996 * 109.47278 * 300.38565 * 6 5 4 29 29 H 1.08998 * 109.46697 * 60.38155 * 6 5 4 30 30 H 1.08993 * 109.47287 * 180.37955 * 6 5 4 31 31 H 1.08996 * 110.68821 * 263.03745 * 8 7 5 32 32 H 1.08997 * 110.69106 * 139.83403 * 8 7 5 33 33 H 1.08997 * 109.46863 * 298.78245 * 11 9 8 34 34 H 1.08994 * 109.47177 * 58.78996 * 11 9 8 35 35 H 0.96998 * 120.00359 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 6 3.6044 3.3875 -1.1774 7 8 3.8444 3.2496 1.2297 8 6 5.0941 3.5726 1.8725 9 6 6.1071 3.5499 0.7008 10 1 6.0962 4.4945 0.1571 11 6 7.5160 3.2245 1.2011 12 6 8.4666 3.1819 0.0325 13 1 8.1023 3.3679 -0.9670 14 6 9.8014 2.9055 0.2396 15 7 10.2452 2.6795 1.4567 16 14 10.9797 2.8520 -1.2090 17 1 10.9879 4.1720 -1.8893 18 1 12.3471 2.5363 -0.7234 19 1 10.5407 1.8048 -2.1659 20 8 5.5865 2.4748 -0.1174 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.6887 1.8464 0.8899 25 1 1.6887 1.8463 -0.8900 26 1 3.8575 0.6435 -0.8892 27 1 3.8568 0.6438 0.8908 28 1 3.8431 2.8773 -2.1106 29 1 2.5226 3.4779 -1.0792 30 1 4.0532 4.3807 -1.1812 31 1 5.3498 2.8193 2.6176 32 1 5.0499 4.5635 2.3244 33 1 7.8384 3.9927 1.9039 34 1 7.5096 2.2553 1.6998 35 1 11.1842 2.4847 1.6023 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260489551.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:07 Heat of formation + Delta-G solvation = -148.723388 kcal Electronic energy + Delta-G solvation = -16682.341330 eV Core-core repulsion = 13873.459758 eV Total energy + Delta-G solvation = -2808.881572 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.13856 -37.87887 -34.64854 -33.87733 -32.73118 -30.22710 -28.53769 -26.60155 -26.32373 -23.73953 -23.23637 -20.70312 -19.97960 -17.12363 -16.59578 -16.17500 -15.91542 -15.55416 -15.15886 -14.52617 -14.24579 -14.14496 -13.53996 -13.00838 -12.78072 -12.29883 -12.05044 -11.91465 -11.76176 -11.63263 -11.35659 -11.16261 -11.09593 -10.96851 -10.55022 -10.50973 -9.72272 -9.65695 -9.46197 -9.16251 -9.02577 -8.39447 -6.02373 -4.03744 3.34882 3.38743 3.42326 3.56430 3.95711 4.45406 4.57854 4.96720 5.11345 5.13122 5.20183 5.30345 5.33833 5.35851 5.41821 5.50815 5.55452 5.60500 5.74103 5.79737 5.99632 6.02957 6.14681 6.28658 6.38516 6.42516 6.73201 7.10924 7.39639 7.55398 7.79700 7.94340 8.34090 8.99842 9.59588 11.09214 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.041083 B = 0.005573 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.389628 B = 5022.998678 C = 5218.497540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.067 3.933 4 C -0.119 4.119 5 C 0.252 3.748 6 C -0.172 4.172 7 O -0.391 6.391 8 C 0.020 3.980 9 C 0.060 3.940 10 H 0.071 0.929 11 C 0.028 3.972 12 C -0.513 4.513 13 H 0.058 0.942 14 C 0.057 3.943 15 N -0.898 5.898 16 Si 0.895 3.105 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 O -0.350 6.350 21 H 0.084 0.916 22 H 0.040 0.960 23 H 0.039 0.961 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.036 0.964 34 H 0.029 0.971 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.251 -0.207 -2.030 16.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.312 6.312 3 C -0.010 4.010 4 C -0.157 4.157 5 C 0.174 3.826 6 C -0.229 4.229 7 O -0.312 6.312 8 C -0.056 4.056 9 C 0.003 3.997 10 H 0.089 0.911 11 C -0.009 4.009 12 C -0.552 4.552 13 H 0.076 0.924 14 C -0.144 4.144 15 N -0.537 5.537 16 Si 0.723 3.277 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 O -0.270 6.270 21 H 0.102 0.898 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.105 0.895 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.058 -0.530 -1.984 16.189 hybrid contribution 0.575 0.298 -0.694 0.950 sum -15.483 -0.232 -2.679 15.715 Atomic orbital electron populations 1.22708 0.81298 1.02507 0.99874 1.87864 1.19467 1.28464 1.95445 1.22532 0.93562 0.84203 1.00656 1.21704 0.93038 0.96113 1.04826 1.23077 0.83488 0.90892 0.85093 1.22441 1.01232 1.01175 0.98100 1.88754 1.29759 1.78107 1.34615 1.24376 0.82786 1.01457 0.96966 1.24256 0.97325 0.90008 0.88114 0.91132 1.19181 0.86518 0.98144 0.97062 1.21049 0.92636 1.47995 0.93489 0.92366 1.24988 0.98374 0.95258 0.95769 1.69933 1.15297 1.48327 1.20130 0.86597 0.79808 0.78583 0.82682 1.20248 1.21301 1.20156 1.89404 1.15447 1.52514 1.69646 0.89791 0.94147 0.94232 0.92521 0.92990 0.89535 0.90053 0.90738 0.91432 0.91706 0.90772 0.89030 0.94610 0.95270 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.43 16 2 O -0.39 -5.38 10.70 -35.23 -0.38 -5.76 16 3 C 0.07 0.89 5.34 37.16 0.20 1.09 16 4 C -0.12 -1.88 5.27 -26.73 -0.14 -2.02 16 5 C 0.25 4.37 1.15 -26.73 -0.03 4.34 16 6 C -0.17 -2.49 8.68 37.16 0.32 -2.17 16 7 O -0.39 -6.83 10.44 -59.04 -0.62 -7.44 16 8 C 0.02 0.36 7.54 38.16 0.29 0.65 16 9 C 0.06 1.26 3.42 -25.72 -0.09 1.17 16 10 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 11 C 0.03 0.71 4.77 -27.88 -0.13 0.58 16 12 C -0.51 -14.57 8.96 -34.44 -0.31 -14.88 16 13 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 16 Si 0.90 21.86 29.54 -169.99 -5.02 16.83 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 O -0.35 -7.54 10.57 -59.04 -0.62 -8.17 16 21 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 23 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.75 7.85 -51.93 -0.41 0.35 16 25 H 0.05 0.61 6.35 -51.93 -0.33 0.28 16 26 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 0.82 6.37 -51.93 -0.33 0.49 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.32 8.03 -51.93 -0.42 0.90 16 32 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 291.68 15.07 4.40 4.40 Total: -1.00 -31.11 291.68 -6.06 -37.17 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -5.68 Total: -2.74 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 1.12 Total: -8.27 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 0.74 Total: -26.02 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -1.62 Total: -21.37 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.11 -6.06 -37.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260489551.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.552 kcal (2) G-P(sol) polarization free energy of solvation -31.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds