Wall clock time and date at job start Mon Mar 30 2020 03:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00321 * 2 1 4 4 C 1.52998 * 109.47178 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46759 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.51069 * 305.31821 * 5 4 3 7 7 O 1.43373 * 109.62951 * 65.64056 * 5 4 3 8 8 C 1.44196 * 107.28834 * 120.54703 * 7 5 4 9 9 C 1.54909 * 103.07727 * 21.43462 * 8 7 5 10 10 H 1.08999 * 110.98055 * 82.54581 * 9 8 7 11 11 C 1.53003 * 110.97554 * 206.33398 * 9 8 7 12 12 C 1.50700 * 109.46817 * 178.78921 * 11 9 8 13 13 H 1.08001 * 120.00551 * 359.97438 * 12 11 9 14 14 C 1.37883 * 119.99458 * 179.97438 * 12 11 9 15 15 N 1.31506 * 120.00471 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99661 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46949 * 60.00142 * 16 14 12 18 18 H 1.48496 * 109.47002 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47575 * 300.00436 * 16 14 12 20 20 O 1.43758 * 109.62960 * 184.99860 * 5 4 3 21 21 H 1.09004 * 109.47205 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46721 * 300.00173 * 1 2 3 23 23 H 1.08992 * 109.47177 * 59.99868 * 1 2 3 24 24 H 1.08999 * 109.47199 * 59.99673 * 3 2 1 25 25 H 1.08997 * 109.46903 * 299.99920 * 3 2 1 26 26 H 1.09002 * 109.47103 * 60.00336 * 4 3 2 27 27 H 1.08997 * 109.47255 * 299.99847 * 4 3 2 28 28 H 1.08996 * 109.47278 * 300.38565 * 6 5 4 29 29 H 1.08998 * 109.46697 * 60.38155 * 6 5 4 30 30 H 1.08993 * 109.47287 * 180.37955 * 6 5 4 31 31 H 1.08996 * 110.68821 * 263.03745 * 8 7 5 32 32 H 1.08997 * 110.69106 * 139.83403 * 8 7 5 33 33 H 1.08997 * 109.46863 * 298.78245 * 11 9 8 34 34 H 1.08994 * 109.47177 * 58.78996 * 11 9 8 35 35 H 0.96998 * 120.00359 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 6 3.6044 3.3875 -1.1774 7 8 3.8444 3.2496 1.2297 8 6 5.0941 3.5726 1.8725 9 6 6.1071 3.5499 0.7008 10 1 6.0962 4.4945 0.1571 11 6 7.5160 3.2245 1.2011 12 6 8.4666 3.1819 0.0325 13 1 8.1023 3.3679 -0.9670 14 6 9.8014 2.9055 0.2396 15 7 10.2452 2.6795 1.4567 16 14 10.9797 2.8520 -1.2090 17 1 10.9879 4.1720 -1.8893 18 1 12.3471 2.5363 -0.7234 19 1 10.5407 1.8048 -2.1659 20 8 5.5865 2.4748 -0.1174 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.6887 1.8464 0.8899 25 1 1.6887 1.8463 -0.8900 26 1 3.8575 0.6435 -0.8892 27 1 3.8568 0.6438 0.8908 28 1 3.8431 2.8773 -2.1106 29 1 2.5226 3.4779 -1.0792 30 1 4.0532 4.3807 -1.1812 31 1 5.3498 2.8193 2.6176 32 1 5.0499 4.5635 2.3244 33 1 7.8384 3.9927 1.9039 34 1 7.5096 2.2553 1.6998 35 1 11.1842 2.4847 1.6023 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260489551.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:07 Heat of formation + Delta-G solvation = -169.716774 kcal Electronic energy + Delta-G solvation = -16683.251671 eV Core-core repulsion = 13873.459758 eV Total energy + Delta-G solvation = -2809.791913 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.59427 -38.87725 -36.26649 -35.43841 -34.51638 -31.97499 -29.72315 -28.32423 -27.25005 -25.14689 -24.86877 -22.41651 -21.35483 -18.73053 -18.19205 -17.72864 -16.99466 -16.83770 -16.67955 -16.09126 -15.58899 -15.45890 -14.91610 -14.47405 -14.09916 -13.95464 -13.74932 -13.29090 -13.12638 -13.08510 -12.84037 -12.67132 -12.50104 -12.40671 -12.19026 -12.02393 -11.67278 -11.19693 -10.95708 -10.63007 -10.59220 -10.52519 -8.21579 -6.30836 1.39980 1.43226 1.51004 2.37556 2.41317 2.67424 3.11463 3.29963 3.70883 3.77560 3.92789 4.04686 4.13144 4.26369 4.30854 4.43108 4.53801 4.55626 4.58259 4.69393 4.75283 4.80643 4.86171 4.89750 5.03511 5.06138 5.23904 5.33474 5.53552 5.74254 6.14612 6.20210 6.28378 6.80361 7.36889 8.90134 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.041083 B = 0.005573 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.389628 B = 5022.998678 C = 5218.497540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.076 3.924 4 C -0.119 4.119 5 C 0.244 3.756 6 C -0.167 4.167 7 O -0.388 6.388 8 C 0.029 3.971 9 C 0.063 3.937 10 H 0.079 0.921 11 C 0.032 3.968 12 C -0.534 4.534 13 H 0.055 0.945 14 C 0.004 3.996 15 N -0.931 5.931 16 Si 0.963 3.037 17 H -0.264 1.264 18 H -0.281 1.281 19 H -0.273 1.273 20 O -0.382 6.382 21 H 0.098 0.902 22 H 0.049 0.951 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.122 0.878 33 H 0.026 0.974 34 H -0.002 1.002 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.576 0.370 -3.192 17.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.001 4.001 4 C -0.157 4.157 5 C 0.167 3.833 6 C -0.225 4.225 7 O -0.309 6.309 8 C -0.048 4.048 9 C 0.006 3.994 10 H 0.096 0.904 11 C -0.005 4.005 12 C -0.572 4.572 13 H 0.073 0.927 14 C -0.194 4.194 15 N -0.571 5.571 16 Si 0.788 3.212 17 H -0.189 1.189 18 H -0.206 1.206 19 H -0.199 1.199 20 O -0.303 6.303 21 H 0.116 0.884 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.102 0.898 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.140 0.860 33 H 0.044 0.956 34 H 0.017 0.983 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.410 0.053 -3.148 17.692 hybrid contribution 0.929 0.063 -0.308 0.981 sum -16.481 0.115 -3.456 16.839 Atomic orbital electron populations 1.22955 0.79105 1.03946 1.01074 1.87823 1.21882 1.28580 1.95664 1.22417 0.91491 0.84509 1.01653 1.21690 0.95209 0.95072 1.03709 1.23445 0.81580 0.92280 0.86027 1.22429 1.02784 1.00408 0.96838 1.88746 1.29200 1.78121 1.34843 1.24311 0.81889 1.03007 0.95549 1.24013 0.95677 0.90072 0.89622 0.90361 1.19002 0.89298 0.96127 0.96063 1.21418 0.93623 1.48037 0.94116 0.92659 1.25882 1.00226 0.94729 0.98608 1.70050 1.15824 1.49061 1.22208 0.85528 0.77491 0.79063 0.79143 1.18891 1.20593 1.19855 1.89355 1.18254 1.52832 1.69900 0.88383 0.93265 0.92651 0.92453 0.90877 0.89822 0.92076 0.90090 0.88671 0.91968 0.91417 0.85979 0.95561 0.98330 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 11.01 113.37 1.25 1.66 16 2 O -0.42 -10.79 10.70 -148.98 -1.59 -12.38 16 3 C 0.08 1.87 5.34 71.98 0.38 2.25 16 4 C -0.12 -3.69 5.27 30.59 0.16 -3.53 16 5 C 0.24 8.18 1.15 30.60 0.04 8.22 16 6 C -0.17 -4.45 8.68 71.98 0.62 -3.83 16 7 O -0.39 -12.95 10.44 -126.22 -1.32 -14.27 16 8 C 0.03 0.99 7.54 72.63 0.55 1.54 16 9 C 0.06 2.66 3.42 31.25 0.11 2.77 16 10 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 11 C 0.03 1.69 4.77 29.85 0.14 1.83 16 12 C -0.53 -30.77 8.96 25.60 0.23 -30.54 16 13 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 14 C 0.00 0.20 5.46 84.66 0.46 0.66 16 15 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 16 Si 0.96 44.85 29.54 68.60 2.03 46.87 16 17 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 20 O -0.38 -16.58 10.57 -126.22 -1.33 -17.92 16 21 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 22 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 23 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.06 1.40 7.85 -2.39 -0.02 1.39 16 25 H 0.07 1.49 6.35 -2.39 -0.02 1.47 16 26 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.09 1.99 6.37 -2.39 -0.02 1.97 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 2.42 8.03 -2.39 -0.02 2.40 16 32 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 33 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 35 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -66.93 291.68 3.05 -63.88 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 1.05 Total: 8.88 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 3.94 Total: -18.96 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.28 Total: -56.10 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -4.25 Total: -44.57 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -66.93 3.05 -63.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260489551.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.842 kcal (2) G-P(sol) polarization free energy of solvation -66.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds