Wall clock time and date at job start Mon Mar 30 2020 03:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37980 * 119.73196 * 2 1 4 4 C 1.38219 * 119.77114 * 179.97438 * 3 2 1 5 5 C 1.37979 * 119.77477 * 359.86984 * 4 3 2 6 6 C 1.38870 * 120.54468 * 0.05430 * 5 4 3 7 7 C 1.37706 * 119.67622 * 0.18299 * 6 5 4 8 8 C 1.50637 * 122.55704 * 179.32558 * 7 6 5 9 9 C 1.52745 * 110.56912 * 17.83843 * 8 7 6 10 10 C 1.53312 * 108.37970 * 308.83902 * 9 8 7 11 11 H 1.09007 * 109.70806 * 310.12760 * 10 9 8 12 12 C 1.50698 * 109.67973 * 189.61042 * 10 9 8 13 13 H 1.07997 * 120.00120 * 246.56211 * 12 10 9 14 14 C 1.37881 * 120.00384 * 66.55443 * 12 10 9 15 15 N 1.31513 * 120.00196 * 195.24056 * 14 12 10 16 16 Si 1.86797 * 119.99659 * 15.24630 * 14 12 10 17 17 H 1.48500 * 109.47142 * 179.97438 * 16 14 12 18 18 H 1.48502 * 109.47569 * 59.99567 * 16 14 12 19 19 H 1.48509 * 109.47138 * 299.99630 * 16 14 12 20 20 C 1.50629 * 117.75860 * 180.23091 * 6 5 4 21 21 H 1.08997 * 109.25094 * 317.94906 * 20 6 5 22 22 C 1.52998 * 109.22198 * 77.39385 * 20 6 5 23 23 H 1.08995 * 109.47380 * 269.97950 * 1 2 3 24 24 H 1.09000 * 109.46804 * 29.97932 * 1 2 3 25 25 H 1.08999 * 109.47366 * 149.97459 * 1 2 3 26 26 H 1.08003 * 120.11096 * 359.97169 * 3 2 1 27 27 H 1.07997 * 120.10981 * 179.89744 * 4 3 2 28 28 H 1.08003 * 119.72479 * 180.02562 * 5 4 3 29 29 H 1.08991 * 109.25778 * 138.12504 * 8 7 6 30 30 H 1.09002 * 109.24873 * 257.60025 * 8 7 6 31 31 H 1.09008 * 109.67522 * 189.11996 * 9 8 7 32 32 H 1.08997 * 109.69121 * 68.56771 * 9 8 7 33 33 H 0.96995 * 119.99939 * 354.64750 * 15 14 12 34 34 H 1.08998 * 109.46995 * 181.08882 * 22 20 6 35 35 H 1.08993 * 109.46994 * 301.09425 * 22 20 6 36 36 H 1.09008 * 109.47112 * 61.09109 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1913 1.1982 0.0000 4 6 3.5735 1.1991 0.0005 5 6 4.2595 0.0019 0.0038 6 6 3.5727 -1.2050 0.0054 7 6 2.1956 -1.2059 -0.0001 8 6 1.3858 -2.4760 -0.0137 9 6 2.2434 -3.6639 0.4181 10 6 3.5280 -3.6622 -0.4187 11 1 3.2781 -3.5689 -1.4756 12 6 4.2856 -4.9444 -0.1880 13 1 5.2443 -4.9232 0.3088 14 6 3.7548 -6.1445 -0.6111 15 7 4.2475 -7.2771 -0.1594 16 14 2.3359 -6.1617 -1.8259 17 1 1.9519 -7.5660 -2.1187 18 1 2.7526 -5.4905 -3.0834 19 1 1.1755 -5.4422 -1.2418 20 6 4.3842 -2.4740 0.0143 21 1 5.2248 -2.3678 -0.6714 22 6 4.9146 -2.7228 1.4277 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3634 -0.8897 -0.5142 26 1 1.6487 2.1320 -0.0005 27 1 4.1146 2.1337 -0.0011 28 1 5.3395 0.0036 0.0046 29 1 0.5438 -2.3728 0.6706 30 1 1.0103 -2.6520 -1.0217 31 1 1.6967 -4.5918 0.2497 32 1 2.4936 -3.5714 1.4749 33 1 5.0329 -7.2716 0.4098 34 1 5.5186 -3.6301 1.4346 35 1 5.5262 -1.8766 1.7404 36 1 4.0765 -2.8390 2.1150 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260489909.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:12 Heat of formation + Delta-G solvation = -3.294315 kcal Electronic energy + Delta-G solvation = -16317.480820 eV Core-core repulsion = 13958.047541 eV Total energy + Delta-G solvation = -2359.433280 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.89352 -36.35443 -33.61185 -32.46222 -30.37561 -29.74272 -26.47459 -26.33528 -23.89879 -22.38450 -20.96872 -20.26946 -18.02258 -17.17227 -15.91779 -15.23863 -14.66004 -14.15532 -13.79515 -13.50238 -13.36550 -12.76163 -12.69084 -12.48945 -12.21463 -11.90622 -11.64126 -11.37917 -11.17263 -10.88746 -10.83587 -10.48636 -10.46088 -10.07150 -9.68839 -9.55472 -9.20479 -8.64102 -8.18918 -8.10841 -8.08287 -6.38651 -4.00319 1.70354 1.79133 3.40900 3.46070 3.63660 4.09272 4.52955 5.09289 5.11238 5.25320 5.31639 5.39590 5.53083 5.70512 5.74390 5.83391 5.86961 5.91198 6.01177 6.05421 6.20751 6.26396 6.31445 6.48122 6.58447 6.66587 6.75311 6.78323 6.84994 6.90121 6.98764 7.06485 7.30519 7.33835 7.45395 7.60857 8.21414 8.43814 8.96289 9.67721 11.00697 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.032648 B = 0.009153 C = 0.007729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.417654 B = 3058.288449 C = 3621.698451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.095 4.095 3 C -0.135 4.135 4 C -0.128 4.128 5 C -0.129 4.129 6 C -0.052 4.052 7 C -0.067 4.067 8 C -0.086 4.086 9 C -0.123 4.123 10 C 0.026 3.974 11 H 0.021 0.979 12 C -0.592 4.592 13 H 0.062 0.938 14 C 0.028 3.972 15 N -0.912 5.912 16 Si 1.044 2.956 17 H -0.289 1.289 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.040 4.040 21 H 0.066 0.934 22 C -0.127 4.127 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.266 0.734 34 H 0.070 0.930 35 H 0.030 0.970 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.169 14.305 0.465 15.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.095 4.095 3 C -0.153 4.153 4 C -0.146 4.146 5 C -0.147 4.147 6 C -0.052 4.052 7 C -0.067 4.067 8 C -0.123 4.123 9 C -0.161 4.161 10 C 0.007 3.993 11 H 0.039 0.961 12 C -0.630 4.630 13 H 0.080 0.920 14 C -0.176 4.176 15 N -0.547 5.547 16 Si 0.873 3.127 17 H -0.215 1.215 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.058 4.058 21 H 0.085 0.915 22 C -0.184 4.184 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.049 0.951 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.227 13.287 -0.317 14.678 hybrid contribution 1.184 1.193 0.790 1.857 sum -5.043 14.480 0.473 15.341 Atomic orbital electron populations 1.20802 0.91869 1.02416 1.01907 1.19907 0.95685 0.92850 1.01071 1.20779 0.94260 0.96889 1.03368 1.20920 0.94292 0.97532 1.01832 1.21163 0.99569 0.92153 1.01840 1.20039 0.93109 0.95579 0.96504 1.19626 0.93185 0.94411 0.99518 1.20640 0.97557 0.93013 1.01044 1.22121 0.97621 0.95673 1.00693 1.18995 0.92162 0.93793 0.94311 0.96091 1.22100 1.07285 0.91500 1.42083 0.91990 1.25731 1.02100 0.92185 0.97584 1.70859 1.22730 1.28105 1.33017 0.84044 0.76387 0.75644 0.76579 1.21463 1.21147 1.19949 1.20001 0.96971 0.91371 0.97466 0.91544 1.21779 1.00363 1.00543 0.95697 0.91566 0.92139 0.91314 0.86914 0.86851 0.86729 0.91977 0.91489 0.91637 0.92542 0.92419 0.91140 0.95093 0.93184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 9.15 36.01 0.33 -1.07 16 2 C -0.10 -1.47 5.89 -104.48 -0.62 -2.08 16 3 C -0.13 -1.91 9.69 -39.68 -0.38 -2.30 16 4 C -0.13 -1.84 10.05 -39.68 -0.40 -2.24 16 5 C -0.13 -2.10 9.46 -39.44 -0.37 -2.48 16 6 C -0.05 -0.97 5.01 -104.62 -0.52 -1.50 16 7 C -0.07 -1.21 5.74 -104.61 -0.60 -1.81 16 8 C -0.09 -1.56 4.45 -28.04 -0.12 -1.68 16 9 C -0.12 -2.66 4.85 -26.70 -0.13 -2.79 16 10 C 0.03 0.62 1.47 -91.75 -0.13 0.48 16 11 H 0.02 0.51 6.79 -51.92 -0.35 0.16 16 12 C -0.59 -16.12 8.22 -34.44 -0.28 -16.40 16 13 H 0.06 1.79 6.12 -52.49 -0.32 1.47 16 14 C 0.03 0.80 5.31 -17.82 -0.09 0.71 16 15 N -0.91 -27.80 13.70 55.43 0.76 -27.04 16 16 Si 1.04 25.18 26.24 -169.99 -4.46 20.72 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.27 -6.02 5.76 56.52 0.33 -5.70 16 20 C -0.04 -0.82 2.38 -91.95 -0.22 -1.04 16 21 H 0.07 1.37 8.12 -51.93 -0.42 0.95 16 22 C -0.13 -2.50 8.54 37.16 0.32 -2.19 16 23 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 25 H 0.07 0.84 6.70 -51.93 -0.35 0.50 16 26 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 27 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.11 1.69 8.05 -52.48 -0.42 1.27 16 29 H 0.06 1.00 7.17 -51.93 -0.37 0.63 16 30 H 0.07 1.19 8.11 -51.93 -0.42 0.77 16 31 H 0.07 1.49 4.92 -51.92 -0.26 1.23 16 32 H 0.06 1.22 6.26 -51.93 -0.32 0.89 16 33 H 0.27 8.06 8.73 -40.82 -0.36 7.71 16 34 H 0.07 1.51 6.00 -51.93 -0.31 1.20 16 35 H 0.03 0.53 8.05 -51.93 -0.42 0.11 16 36 H 0.05 0.99 6.43 -51.92 -0.33 0.66 16 LS Contribution 273.89 15.07 4.13 4.13 Total: -1.00 -29.27 273.89 -8.03 -37.29 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.22 Total: 1.27 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: -3.24 Total: -36.37 kcal Atomic # 7 Polarization: -27.80 SS G_CDS: 0.76 Total: -27.04 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -4.46 Total: 20.72 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.27 -8.03 -37.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260489909.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.000 kcal (2) G-P(sol) polarization free energy of solvation -29.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds