Wall clock time and date at job start Mon Mar 30 2020 03:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37980 * 119.73196 * 2 1 4 4 C 1.38219 * 119.77114 * 179.97438 * 3 2 1 5 5 C 1.37979 * 119.77477 * 359.86984 * 4 3 2 6 6 C 1.38870 * 120.54468 * 0.05430 * 5 4 3 7 7 C 1.37706 * 119.67622 * 0.18299 * 6 5 4 8 8 C 1.50637 * 122.55704 * 179.32558 * 7 6 5 9 9 C 1.52745 * 110.56912 * 17.83843 * 8 7 6 10 10 C 1.53312 * 108.37970 * 308.83902 * 9 8 7 11 11 H 1.09007 * 109.70806 * 310.12760 * 10 9 8 12 12 C 1.50698 * 109.67973 * 189.61042 * 10 9 8 13 13 H 1.07997 * 120.00120 * 246.56211 * 12 10 9 14 14 C 1.37881 * 120.00384 * 66.55443 * 12 10 9 15 15 N 1.31513 * 120.00196 * 195.24056 * 14 12 10 16 16 Si 1.86797 * 119.99659 * 15.24630 * 14 12 10 17 17 H 1.48500 * 109.47142 * 179.97438 * 16 14 12 18 18 H 1.48502 * 109.47569 * 59.99567 * 16 14 12 19 19 H 1.48509 * 109.47138 * 299.99630 * 16 14 12 20 20 C 1.50629 * 117.75860 * 180.23091 * 6 5 4 21 21 H 1.08997 * 109.25094 * 317.94906 * 20 6 5 22 22 C 1.52998 * 109.22198 * 77.39385 * 20 6 5 23 23 H 1.08995 * 109.47380 * 269.97950 * 1 2 3 24 24 H 1.09000 * 109.46804 * 29.97932 * 1 2 3 25 25 H 1.08999 * 109.47366 * 149.97459 * 1 2 3 26 26 H 1.08003 * 120.11096 * 359.97169 * 3 2 1 27 27 H 1.07997 * 120.10981 * 179.89744 * 4 3 2 28 28 H 1.08003 * 119.72479 * 180.02562 * 5 4 3 29 29 H 1.08991 * 109.25778 * 138.12504 * 8 7 6 30 30 H 1.09002 * 109.24873 * 257.60025 * 8 7 6 31 31 H 1.09008 * 109.67522 * 189.11996 * 9 8 7 32 32 H 1.08997 * 109.69121 * 68.56771 * 9 8 7 33 33 H 0.96995 * 119.99939 * 354.64750 * 15 14 12 34 34 H 1.08998 * 109.46995 * 181.08882 * 22 20 6 35 35 H 1.08993 * 109.46994 * 301.09425 * 22 20 6 36 36 H 1.09008 * 109.47112 * 61.09109 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1913 1.1982 0.0000 4 6 3.5735 1.1991 0.0005 5 6 4.2595 0.0019 0.0038 6 6 3.5727 -1.2050 0.0054 7 6 2.1956 -1.2059 -0.0001 8 6 1.3858 -2.4760 -0.0137 9 6 2.2434 -3.6639 0.4181 10 6 3.5280 -3.6622 -0.4187 11 1 3.2781 -3.5689 -1.4756 12 6 4.2856 -4.9444 -0.1880 13 1 5.2443 -4.9232 0.3088 14 6 3.7548 -6.1445 -0.6111 15 7 4.2475 -7.2771 -0.1594 16 14 2.3359 -6.1617 -1.8259 17 1 1.9519 -7.5660 -2.1187 18 1 2.7526 -5.4905 -3.0834 19 1 1.1755 -5.4422 -1.2418 20 6 4.3842 -2.4740 0.0143 21 1 5.2248 -2.3678 -0.6714 22 6 4.9146 -2.7228 1.4277 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3634 -0.8897 -0.5142 26 1 1.6487 2.1320 -0.0005 27 1 4.1146 2.1337 -0.0011 28 1 5.3395 0.0036 0.0046 29 1 0.5438 -2.3728 0.6706 30 1 1.0103 -2.6520 -1.0217 31 1 1.6967 -4.5918 0.2497 32 1 2.4936 -3.5714 1.4749 33 1 5.0329 -7.2716 0.4098 34 1 5.5186 -3.6301 1.4346 35 1 5.5262 -1.8766 1.7404 36 1 4.0765 -2.8390 2.1150 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260489909.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:12 Heat of formation + Delta-G solvation = -18.640395 kcal Electronic energy + Delta-G solvation = -16318.146276 eV Core-core repulsion = 13958.047541 eV Total energy + Delta-G solvation = -2360.098736 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.23089 -37.88793 -34.88397 -34.52171 -31.74744 -31.27255 -28.10073 -27.49738 -25.67192 -23.87914 -22.58229 -21.50957 -19.86672 -19.03744 -17.19067 -16.68255 -16.07351 -15.65403 -15.45407 -14.98096 -14.80886 -14.31144 -14.13281 -13.81767 -13.49618 -13.26391 -13.14846 -12.87896 -12.77452 -12.45197 -12.24329 -12.19607 -11.88854 -11.76865 -11.47305 -11.32659 -10.92885 -10.61021 -10.26104 -9.36309 -9.32729 -8.66425 -6.28061 0.53021 0.57557 1.45535 1.52664 1.71872 2.51136 2.89721 3.12708 3.86350 3.88726 4.11555 4.16870 4.24059 4.35729 4.37403 4.52329 4.58548 4.67965 4.75169 4.77540 4.87438 4.91789 4.98982 5.05304 5.07668 5.16810 5.24727 5.31680 5.36226 5.41510 5.50161 5.66741 5.76320 5.79779 5.97338 6.12055 6.16084 6.27548 6.67479 7.48107 8.71738 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.032648 B = 0.009153 C = 0.007729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.417654 B = 3058.288449 C = 3621.698451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.097 4.097 3 C -0.131 4.131 4 C -0.122 4.122 5 C -0.141 4.141 6 C -0.077 4.077 7 C -0.091 4.091 8 C -0.079 4.079 9 C -0.119 4.119 10 C 0.024 3.976 11 H 0.015 0.985 12 C -0.589 4.589 13 H 0.031 0.969 14 C -0.024 4.024 15 N -0.947 5.947 16 Si 1.078 2.922 17 H -0.294 1.294 18 H -0.271 1.271 19 H -0.239 1.239 20 C -0.037 4.037 21 H 0.055 0.945 22 C -0.118 4.118 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.147 0.853 27 H 0.145 0.855 28 H 0.122 0.878 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.250 0.750 34 H 0.040 0.960 35 H 0.056 0.944 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.361 17.767 -0.001 19.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.140 4.140 5 C -0.159 4.159 6 C -0.077 4.077 7 C -0.091 4.091 8 C -0.115 4.115 9 C -0.157 4.157 10 C 0.005 3.995 11 H 0.033 0.967 12 C -0.626 4.626 13 H 0.049 0.951 14 C -0.221 4.221 15 N -0.584 5.584 16 Si 0.901 3.099 17 H -0.220 1.220 18 H -0.197 1.197 19 H -0.163 1.163 20 C -0.056 4.056 21 H 0.073 0.927 22 C -0.175 4.175 23 H 0.096 0.904 24 H 0.101 0.899 25 H 0.085 0.915 26 H 0.165 0.835 27 H 0.163 0.837 28 H 0.140 0.860 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.412 16.779 -0.770 18.785 hybrid contribution 1.966 0.211 0.981 2.207 sum -6.446 16.990 0.211 18.173 Atomic orbital electron populations 1.20870 0.89606 1.03546 1.02973 1.20233 0.97409 0.92201 0.99880 1.21225 0.94375 0.97823 1.01420 1.21301 0.94801 0.97904 0.99956 1.21297 1.00173 0.92189 1.02198 1.19861 0.93579 0.94974 0.99292 1.19698 0.92961 0.95274 1.01209 1.20559 0.97573 0.91657 1.01759 1.21941 0.97005 0.96961 0.99772 1.18953 0.93250 0.92913 0.94390 0.96655 1.22375 1.06306 0.93636 1.40324 0.95091 1.27076 1.04449 0.91899 0.98687 1.70990 1.23293 1.29342 1.34799 0.83639 0.75105 0.75928 0.75244 1.22010 1.19680 1.16294 1.19852 0.96645 0.91942 0.97153 0.92651 1.21661 1.00008 1.00157 0.95667 0.90397 0.89861 0.91453 0.83528 0.83696 0.86015 0.89630 0.91019 0.93054 0.93417 0.94119 0.94081 0.92508 0.93702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.27 9.15 71.24 0.65 -1.61 16 2 C -0.10 -2.60 5.89 -19.78 -0.12 -2.72 16 3 C -0.13 -3.06 9.69 22.20 0.22 -2.84 16 4 C -0.12 -2.98 10.05 22.20 0.22 -2.76 16 5 C -0.14 -4.24 9.46 22.36 0.21 -4.02 16 6 C -0.08 -2.75 5.01 -19.86 -0.10 -2.85 16 7 C -0.09 -3.06 5.74 -19.86 -0.11 -3.17 16 8 C -0.08 -2.69 4.45 29.74 0.13 -2.55 16 9 C -0.12 -5.07 4.85 30.61 0.15 -4.93 16 10 C 0.02 1.13 1.47 -11.53 -0.02 1.11 16 11 H 0.02 0.74 6.79 -2.38 -0.02 0.73 16 12 C -0.59 -33.39 8.22 25.60 0.21 -33.18 16 13 H 0.03 1.91 6.12 -2.91 -0.02 1.89 16 14 C -0.02 -1.42 5.31 84.66 0.45 -0.97 16 15 N -0.95 -60.23 13.70 21.45 0.29 -59.93 16 16 Si 1.08 50.92 26.24 68.60 1.80 52.72 16 17 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 19 H -0.24 -9.89 5.76 99.48 0.57 -9.32 16 20 C -0.04 -1.56 2.38 -11.65 -0.03 -1.59 16 21 H 0.06 2.35 8.12 -2.39 -0.02 2.33 16 22 C -0.12 -4.77 8.54 71.98 0.61 -4.15 16 23 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.08 1.29 8.08 -2.39 -0.02 1.27 16 25 H 0.07 1.37 6.70 -2.39 -0.02 1.35 16 26 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 27 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 28 H 0.12 3.37 8.05 -2.91 -0.02 3.35 16 29 H 0.09 2.49 7.17 -2.39 -0.02 2.47 16 30 H 0.07 2.36 8.11 -2.39 -0.02 2.34 16 31 H 0.05 2.29 4.92 -2.38 -0.01 2.28 16 32 H 0.05 2.07 6.26 -2.39 -0.01 2.06 16 33 H 0.25 16.11 8.73 -92.71 -0.81 15.30 16 34 H 0.04 1.86 6.00 -2.39 -0.01 1.84 16 35 H 0.06 1.95 8.05 -2.39 -0.02 1.93 16 36 H 0.04 1.82 6.43 -2.38 -0.02 1.80 16 Total: -1.00 -65.67 273.89 5.46 -60.21 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.89 Total: 13.25 kcal Atomic # 6 Polarization: -68.73 SS G_CDS: 2.48 Total: -66.24 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.29 Total: -59.93 kcal Atomic # 14 Polarization: 50.92 SS G_CDS: 1.80 Total: 52.72 kcal Total: -65.67 5.46 -60.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260489909.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.568 kcal (2) G-P(sol) polarization free energy of solvation -65.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds