Wall clock time and date at job start Mon Mar 30 2020 02:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47015 * 2 1 4 4 N 1.46500 * 109.47326 * 120.00498 * 2 1 3 5 5 C 1.35764 * 124.62443 * 300.02386 * 4 2 1 6 6 C 1.38896 * 109.25676 * 179.73964 * 5 4 2 7 7 C 1.40885 * 126.98643 * 180.23998 * 6 5 4 8 8 H 1.08005 * 119.99820 * 161.21423 * 7 6 5 9 9 C 1.39767 * 120.00274 * 341.21858 * 7 6 5 10 10 N 1.31036 * 119.99983 * 164.39050 * 9 7 6 11 11 Si 1.86799 * 119.99706 * 344.39313 * 9 7 6 12 12 H 1.48499 * 109.47154 * 90.89171 * 11 9 7 13 13 H 1.48496 * 109.47093 * 210.89151 * 11 9 7 14 14 H 1.48501 * 109.47203 * 330.89337 * 11 9 7 15 15 C 1.47555 * 106.02194 * 0.26238 * 6 5 4 16 16 C 1.39265 * 134.09543 * 180.02562 * 15 6 5 17 17 C 1.38452 * 118.07260 * 179.97438 * 16 15 6 18 18 C 1.38509 * 119.28639 * 359.97438 * 17 16 15 19 19 N 1.31653 * 121.53088 * 0.02693 * 18 17 16 20 20 C 1.32702 * 121.73887 * 359.95333 * 19 18 17 21 21 H 1.08998 * 109.47220 * 179.97438 * 1 2 3 22 22 H 1.09012 * 109.46637 * 299.99792 * 1 2 3 23 23 H 1.08992 * 109.47166 * 59.99440 * 1 2 3 24 24 H 1.08995 * 109.46820 * 240.00389 * 2 1 3 25 25 H 1.09006 * 109.46982 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47617 * 299.99982 * 3 2 1 27 27 H 1.08999 * 109.47428 * 60.00783 * 3 2 1 28 28 H 1.08001 * 125.36856 * 359.97438 * 5 4 2 29 29 H 0.97003 * 119.99568 * 179.97438 * 10 9 7 30 30 H 1.07999 * 120.96091 * 359.97363 * 16 15 6 31 31 H 1.07998 * 120.35517 * 180.02562 * 17 16 15 32 32 H 1.07999 * 119.23700 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7485 -0.3099 2.4710 6 6 2.3638 -1.1901 3.3519 7 6 2.3243 -1.1465 4.7595 8 1 2.5728 -2.0265 5.3343 9 6 1.9635 0.0356 5.4123 10 7 1.6290 0.0087 6.6789 11 14 1.9580 1.6536 4.4788 12 1 0.6131 1.8821 3.8921 13 1 2.2870 2.7631 5.4095 14 1 2.9695 1.6021 3.3928 15 6 3.0676 -2.1797 2.5137 16 6 3.8534 -3.2967 2.7864 17 6 4.3640 -4.0111 1.7159 18 6 4.0786 -3.5953 0.4259 19 7 3.3329 -2.5356 0.1933 20 6 2.8174 -1.8143 1.1807 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 1.1469 0.5408 2.7553 29 1 1.3790 0.8292 7.1320 30 1 4.0585 -3.5969 3.8033 31 1 4.9776 -4.8836 1.8850 32 1 4.4769 -4.1534 -0.4085 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260498229.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:44 Heat of formation + Delta-G solvation = 60.674349 kcal Electronic energy + Delta-G solvation = -15866.199542 eV Core-core repulsion = 13405.999808 eV Total energy + Delta-G solvation = -2460.199734 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.40496 -37.27924 -34.68455 -33.04689 -31.62801 -29.20743 -28.38582 -27.01635 -25.05677 -22.69830 -22.02083 -20.38376 -19.15321 -17.40168 -16.21498 -15.63412 -15.14772 -14.47924 -14.33764 -13.96357 -13.81105 -13.21257 -12.84113 -12.60424 -12.12348 -11.99763 -11.80564 -11.56558 -11.35681 -11.09374 -10.86100 -10.82263 -10.51731 -10.23960 -9.65913 -9.49614 -9.05428 -8.47295 -7.38476 -7.05824 -6.80054 -4.17092 1.98846 2.26377 3.01215 3.16978 3.29582 3.58803 3.75471 4.03900 4.71284 5.01101 5.11743 5.29363 5.35408 5.46720 5.64616 5.72690 5.75386 5.92401 5.96599 5.97333 6.05607 6.14629 6.37174 6.41849 6.46968 6.60386 6.80926 7.05353 7.31856 7.43447 7.65701 8.12038 8.20330 8.47865 8.70090 8.92520 8.97196 10.24641 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.020800 B = 0.012872 C = 0.008637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.842166 B = 2174.809612 C = 3241.127910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 C -0.160 4.160 4 N -0.444 5.444 5 C -0.164 4.164 6 C 0.044 3.956 7 C -0.420 4.420 8 H 0.088 0.912 9 C 0.083 3.917 10 N -0.826 5.826 11 Si 0.904 3.096 12 H -0.273 1.273 13 H -0.294 1.294 14 H -0.244 1.244 15 C -0.168 4.168 16 C -0.012 4.012 17 C -0.249 4.249 18 C 0.124 3.876 19 N -0.524 5.524 20 C 0.285 3.715 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.094 0.906 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.145 0.855 29 H 0.282 0.718 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.733 0.265 -9.627 9.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 C -0.218 4.218 4 N -0.132 5.132 5 C -0.284 4.284 6 C 0.038 3.962 7 C -0.452 4.452 8 H 0.106 0.894 9 C -0.133 4.133 10 N -0.452 5.452 11 Si 0.732 3.268 12 H -0.200 1.200 13 H -0.222 1.222 14 H -0.167 1.167 15 C -0.177 4.177 16 C -0.038 4.038 17 C -0.273 4.273 18 C -0.042 4.042 19 N -0.239 5.239 20 C 0.051 3.949 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.112 0.888 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.162 0.838 29 H 0.092 0.908 30 H 0.141 0.859 31 H 0.137 0.863 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.278 0.914 -10.400 10.444 hybrid contribution 0.068 0.588 0.624 0.861 sum 0.346 1.503 -9.776 9.896 Atomic orbital electron populations 1.22133 0.94773 1.02612 1.02132 1.21101 0.94438 0.93174 0.87986 1.22158 1.01876 0.95712 1.02076 1.42991 1.42660 1.22028 1.05481 1.21391 1.17068 1.08781 0.81132 1.18150 0.94040 0.91446 0.92569 1.18592 1.39346 0.98633 0.88594 0.89366 1.25902 0.91615 1.00972 0.94834 1.69743 1.34084 1.30366 1.11056 0.86463 0.80041 0.80490 0.79813 1.20019 1.22185 1.16708 1.19968 1.04007 0.99686 0.94077 1.20828 0.92437 0.91749 0.98784 1.21484 1.08267 1.03794 0.93737 1.22005 0.94488 0.92013 0.95647 1.66323 1.13784 1.08135 1.35682 1.18334 0.96054 0.90437 0.90084 0.92107 0.91979 0.91723 0.88809 0.92180 0.91600 0.92207 0.83830 0.90824 0.85911 0.86253 0.84043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.22 37.16 0.34 -2.07 16 2 C 0.14 2.37 3.51 -67.93 -0.24 2.14 16 3 C -0.16 -2.49 9.22 37.16 0.34 -2.14 16 4 N -0.44 -9.75 2.63 -108.11 -0.28 -10.03 16 5 C -0.16 -3.92 7.49 -15.57 -0.12 -4.04 16 6 C 0.04 1.15 5.67 -104.85 -0.59 0.55 16 7 C -0.42 -11.50 9.94 -38.01 -0.38 -11.88 16 8 H 0.09 2.51 8.06 -52.48 -0.42 2.09 16 9 C 0.08 2.19 5.51 -17.32 -0.10 2.10 16 10 N -0.83 -22.42 13.94 55.54 0.77 -21.65 16 11 Si 0.90 20.75 24.54 -169.99 -4.17 16.58 16 12 H -0.27 -6.02 6.69 56.52 0.38 -5.64 16 13 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 14 H -0.24 -5.69 6.56 56.52 0.37 -5.32 16 15 C -0.17 -4.05 6.35 -104.88 -0.67 -4.72 16 16 C -0.01 -0.25 10.21 -39.12 -0.40 -0.65 16 17 C -0.25 -4.43 10.11 -39.40 -0.40 -4.83 16 18 C 0.12 2.24 11.14 -17.53 -0.20 2.04 16 19 N -0.52 -11.00 10.30 -12.26 -0.13 -11.13 16 20 C 0.29 6.56 7.81 -155.34 -1.21 5.35 16 21 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.06 0.99 7.87 -51.92 -0.41 0.59 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.09 1.59 7.97 -51.93 -0.41 1.18 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.98 7.87 -51.93 -0.41 0.57 16 28 H 0.14 3.37 4.16 -52.49 -0.22 3.15 16 29 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 30 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 31 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 268.92 15.07 4.05 4.05 Total: -1.00 -29.27 268.92 -7.39 -36.65 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -4.02 Total: 3.67 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -3.61 Total: -18.15 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.36 Total: -42.81 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.17 Total: 16.58 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.27 -7.39 -36.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260498229.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.328 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds