Wall clock time and date at job start Mon Mar 30 2020 02:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47015 * 2 1 4 4 N 1.46500 * 109.47326 * 120.00498 * 2 1 3 5 5 C 1.35764 * 124.62443 * 300.02386 * 4 2 1 6 6 C 1.38896 * 109.25676 * 179.73964 * 5 4 2 7 7 C 1.40885 * 126.98643 * 180.23998 * 6 5 4 8 8 H 1.08005 * 119.99820 * 161.21423 * 7 6 5 9 9 C 1.39767 * 120.00274 * 341.21858 * 7 6 5 10 10 N 1.31036 * 119.99983 * 164.39050 * 9 7 6 11 11 Si 1.86799 * 119.99706 * 344.39313 * 9 7 6 12 12 H 1.48499 * 109.47154 * 90.89171 * 11 9 7 13 13 H 1.48496 * 109.47093 * 210.89151 * 11 9 7 14 14 H 1.48501 * 109.47203 * 330.89337 * 11 9 7 15 15 C 1.47555 * 106.02194 * 0.26238 * 6 5 4 16 16 C 1.39265 * 134.09543 * 180.02562 * 15 6 5 17 17 C 1.38452 * 118.07260 * 179.97438 * 16 15 6 18 18 C 1.38509 * 119.28639 * 359.97438 * 17 16 15 19 19 N 1.31653 * 121.53088 * 0.02693 * 18 17 16 20 20 C 1.32702 * 121.73887 * 359.95333 * 19 18 17 21 21 H 1.08998 * 109.47220 * 179.97438 * 1 2 3 22 22 H 1.09012 * 109.46637 * 299.99792 * 1 2 3 23 23 H 1.08992 * 109.47166 * 59.99440 * 1 2 3 24 24 H 1.08995 * 109.46820 * 240.00389 * 2 1 3 25 25 H 1.09006 * 109.46982 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47617 * 299.99982 * 3 2 1 27 27 H 1.08999 * 109.47428 * 60.00783 * 3 2 1 28 28 H 1.08001 * 125.36856 * 359.97438 * 5 4 2 29 29 H 0.97003 * 119.99568 * 179.97438 * 10 9 7 30 30 H 1.07999 * 120.96091 * 359.97363 * 16 15 6 31 31 H 1.07998 * 120.35517 * 180.02562 * 17 16 15 32 32 H 1.07999 * 119.23700 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7485 -0.3099 2.4710 6 6 2.3638 -1.1901 3.3519 7 6 2.3243 -1.1465 4.7595 8 1 2.5728 -2.0265 5.3343 9 6 1.9635 0.0356 5.4123 10 7 1.6290 0.0087 6.6789 11 14 1.9580 1.6536 4.4788 12 1 0.6131 1.8821 3.8921 13 1 2.2870 2.7631 5.4095 14 1 2.9695 1.6021 3.3928 15 6 3.0676 -2.1797 2.5137 16 6 3.8534 -3.2967 2.7864 17 6 4.3640 -4.0111 1.7159 18 6 4.0786 -3.5953 0.4259 19 7 3.3329 -2.5356 0.1933 20 6 2.8174 -1.8143 1.1807 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 1.1469 0.5408 2.7553 29 1 1.3790 0.8292 7.1320 30 1 4.0585 -3.5969 3.8033 31 1 4.9776 -4.8836 1.8850 32 1 4.4769 -4.1534 -0.4085 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260498229.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:43 Heat of formation + Delta-G solvation = 43.695964 kcal Electronic energy + Delta-G solvation = -15866.935780 eV Core-core repulsion = 13405.999808 eV Total energy + Delta-G solvation = -2460.935972 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.07392 -38.84079 -36.33212 -34.83552 -33.22037 -30.99052 -30.00316 -28.21437 -26.87064 -24.35432 -23.57748 -22.06011 -20.82890 -19.14882 -17.90525 -17.34591 -16.76564 -16.13576 -15.94713 -15.53367 -15.30728 -14.92754 -14.21000 -14.15625 -13.63972 -13.53516 -13.27945 -13.06181 -12.96388 -12.68806 -12.53361 -12.45317 -11.95223 -11.88129 -11.56017 -11.24712 -10.86457 -10.09670 -9.01752 -8.90340 -8.77295 -6.17202 0.32632 0.68617 1.16919 1.30742 1.45535 1.88289 2.00077 2.16004 3.02912 3.37981 3.61791 3.75574 4.05071 4.09137 4.16735 4.19756 4.43407 4.55936 4.61566 4.62942 4.77155 4.78019 4.87475 5.00000 5.06867 5.16140 5.20702 5.36821 5.63544 5.65610 5.94452 6.27484 6.38138 6.62097 6.80857 6.93864 7.33802 8.32915 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.020800 B = 0.012872 C = 0.008637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.842166 B = 2174.809612 C = 3241.127910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.125 3.875 3 C -0.156 4.156 4 N -0.450 5.450 5 C -0.142 4.142 6 C 0.008 3.992 7 C -0.451 4.451 8 H 0.053 0.947 9 C 0.042 3.958 10 N -0.869 5.869 11 Si 0.959 3.041 12 H -0.255 1.255 13 H -0.283 1.283 14 H -0.253 1.253 15 C -0.211 4.211 16 C -0.031 4.031 17 C -0.226 4.226 18 C 0.131 3.869 19 N -0.530 5.530 20 C 0.268 3.732 21 H 0.049 0.951 22 H 0.050 0.950 23 H 0.104 0.896 24 H 0.101 0.899 25 H 0.047 0.953 26 H 0.107 0.893 27 H 0.048 0.952 28 H 0.149 0.851 29 H 0.289 0.711 30 H 0.123 0.877 31 H 0.165 0.835 32 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.125 0.358 -12.904 12.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.024 3.976 3 C -0.214 4.214 4 N -0.138 5.138 5 C -0.264 4.264 6 C 0.001 3.999 7 C -0.483 4.483 8 H 0.071 0.929 9 C -0.169 4.169 10 N -0.498 5.498 11 Si 0.784 3.216 12 H -0.181 1.181 13 H -0.209 1.209 14 H -0.177 1.177 15 C -0.219 4.219 16 C -0.058 4.058 17 C -0.249 4.249 18 C -0.035 4.035 19 N -0.246 5.246 20 C 0.035 3.965 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.123 0.877 24 H 0.119 0.881 25 H 0.066 0.934 26 H 0.125 0.875 27 H 0.067 0.933 28 H 0.166 0.834 29 H 0.099 0.901 30 H 0.141 0.859 31 H 0.182 0.818 32 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 0.663 1.003 -13.706 13.758 hybrid contribution 0.055 0.330 1.441 1.479 sum 0.717 1.332 -12.265 12.358 Atomic orbital electron populations 1.22115 0.93023 1.02354 1.03560 1.21511 0.95863 0.93922 0.86317 1.22154 1.01097 0.94563 1.03548 1.43294 1.42413 1.22095 1.05957 1.21456 1.15155 1.07608 0.82164 1.18304 0.95770 0.93536 0.92289 1.18533 1.41912 0.98253 0.89594 0.92908 1.26574 0.91237 1.03539 0.95577 1.69787 1.36234 1.31468 1.12343 0.85622 0.80409 0.76994 0.78537 1.18120 1.20950 1.17687 1.20267 1.05898 1.01154 0.94625 1.21122 0.92729 0.91728 1.00197 1.21984 1.06461 1.03797 0.92631 1.22967 0.92390 0.90772 0.97397 1.66484 1.14304 1.08891 1.34884 1.18565 0.96695 0.91138 0.90100 0.93223 0.93088 0.87708 0.88093 0.93401 0.87488 0.93329 0.83400 0.90140 0.85878 0.81778 0.78949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.25 9.22 71.98 0.66 -3.58 16 2 C 0.13 4.08 3.51 44.99 0.16 4.24 16 3 C -0.16 -4.41 9.22 71.98 0.66 -3.74 16 4 N -0.45 -19.42 2.63 -495.96 -1.30 -20.73 16 5 C -0.14 -6.86 7.49 84.24 0.63 -6.23 16 6 C 0.01 0.41 5.67 -20.01 -0.11 0.30 16 7 C -0.45 -26.25 9.94 23.29 0.23 -26.02 16 8 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 9 C 0.04 2.32 5.51 85.18 0.47 2.78 16 10 N -0.87 -49.45 13.94 21.81 0.30 -49.14 16 11 Si 0.96 43.56 24.54 68.60 1.68 45.25 16 12 H -0.26 -10.73 6.69 99.48 0.67 -10.06 16 13 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 14 H -0.25 -11.70 6.56 99.48 0.65 -11.05 16 15 C -0.21 -10.31 6.35 -20.03 -0.13 -10.44 16 16 C -0.03 -1.31 10.21 22.57 0.23 -1.08 16 17 C -0.23 -7.28 10.11 22.39 0.23 -7.05 16 18 C 0.13 4.16 11.14 84.78 0.94 5.10 16 19 N -0.53 -20.86 10.30 -192.70 -1.98 -22.84 16 20 C 0.27 12.13 7.81 133.68 1.04 13.17 16 21 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.05 1.52 7.87 -2.38 -0.02 1.51 16 23 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.10 3.14 7.97 -2.39 -0.02 3.12 16 25 H 0.05 1.45 8.14 -2.38 -0.02 1.44 16 26 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.05 1.48 7.87 -2.39 -0.02 1.46 16 28 H 0.15 6.90 4.16 -2.91 -0.01 6.88 16 29 H 0.29 14.85 8.30 -92.71 -0.77 14.08 16 30 H 0.12 4.94 8.06 -2.91 -0.02 4.91 16 31 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 32 H 0.19 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -67.17 268.92 4.74 -62.44 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 1.02 Total: 17.57 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 5.02 Total: -32.55 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -2.99 Total: -92.71 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.68 Total: 45.25 kcal Total: -67.17 4.74 -62.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260498229.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.135 kcal (2) G-P(sol) polarization free energy of solvation -67.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds