Wall clock time and date at job start Mon Mar 30 2020 03:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38260 * 120.11430 * 2 1 4 4 C 1.37937 * 119.77711 * 180.09693 * 3 2 1 5 5 C 1.38914 * 120.53887 * 0.02562 * 4 3 2 6 6 C 1.37667 * 119.68225 * 359.76502 * 5 4 3 7 7 C 1.37933 * 120.11598 * 179.97438 * 2 1 3 8 8 C 1.50635 * 122.55992 * 180.38675 * 6 5 4 9 9 H 1.09000 * 109.25077 * 221.98010 * 8 6 5 10 10 C 1.52997 * 109.25617 * 102.51233 * 8 6 5 11 11 C 1.52739 * 110.55950 * 342.24036 * 8 6 5 12 12 H 1.08995 * 109.68112 * 291.35793 * 11 8 6 13 13 C 1.50702 * 109.67671 * 170.80230 * 11 8 6 14 14 H 1.07994 * 120.00618 * 0.02562 * 13 11 8 15 15 C 1.37877 * 119.99504 * 179.97438 * 13 11 8 16 16 N 1.31514 * 120.00100 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99889 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47097 * 90.00271 * 17 15 13 19 19 H 1.48501 * 109.46929 * 210.00305 * 17 15 13 20 20 H 1.48500 * 109.46815 * 330.00382 * 17 15 13 21 21 C 1.53242 * 108.43034 * 51.11063 * 11 8 6 22 22 C 1.50632 * 117.74963 * 179.43148 * 5 4 3 23 23 H 1.08999 * 109.46756 * 270.01850 * 1 2 3 24 24 H 1.08995 * 109.47078 * 30.02284 * 1 2 3 25 25 H 1.08996 * 109.47067 * 150.02175 * 1 2 3 26 26 H 1.08002 * 120.11532 * 0.07607 * 3 2 1 27 27 H 1.07991 * 119.73290 * 180.02562 * 4 3 2 28 28 H 1.07999 * 119.72791 * 359.97438 * 7 2 1 29 29 H 1.09002 * 109.47153 * 59.46494 * 10 8 6 30 30 H 1.09001 * 109.46832 * 299.46685 * 10 8 6 31 31 H 1.09004 * 109.47261 * 179.46666 * 10 8 6 32 32 H 0.97004 * 119.99638 * 180.02562 * 16 15 13 33 33 H 1.09002 * 109.69152 * 170.39782 * 21 11 8 34 34 H 1.08998 * 109.69084 * 49.83431 * 21 11 8 35 35 H 1.08997 * 109.25232 * 282.82858 * 22 5 4 36 36 H 1.08999 * 109.25031 * 42.26637 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1960 0.0000 4 6 3.5800 1.1879 -0.0020 5 6 4.2788 -0.0127 -0.0046 6 6 3.5881 -1.2035 -0.0002 7 6 2.1991 -1.1931 0.0005 8 6 4.2796 -2.5418 0.0059 9 1 3.7655 -3.2151 -0.6800 10 6 4.2320 -3.1278 1.4184 11 6 5.7361 -2.3950 -0.4297 12 1 5.7784 -2.1292 -1.4859 13 6 6.4670 -3.6932 -0.2026 14 1 5.9439 -4.5421 0.2121 15 6 7.8035 -3.7973 -0.5252 16 7 8.4404 -2.7637 -1.0307 17 14 8.7094 -5.4067 -0.2444 18 1 8.6052 -6.2521 -1.4607 19 1 10.1392 -5.1263 0.0426 20 1 8.1039 -6.1209 0.9082 21 6 6.3829 -1.2865 0.4078 22 6 5.7837 0.0517 -0.0199 23 1 -0.3633 0.0003 1.0277 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3633 -0.8901 -0.5135 26 1 1.6644 2.1335 0.0012 27 1 4.1211 2.1224 -0.0016 28 1 1.6565 -2.1270 0.0014 29 1 3.1936 -3.2430 1.7292 30 1 4.7453 -2.4571 2.1075 31 1 4.7232 -4.1009 1.4248 32 1 9.3806 -2.8372 -1.2580 33 1 7.4594 -1.2780 0.2371 34 1 6.1796 -1.4587 1.4647 35 1 6.1229 0.2917 -1.0276 36 1 6.1171 0.8305 0.6660 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260523999.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:46 Heat of formation + Delta-G solvation = -5.491304 kcal Electronic energy + Delta-G solvation = -16088.499005 eV Core-core repulsion = 13728.970457 eV Total energy + Delta-G solvation = -2359.528548 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.61899 -36.31781 -33.02408 -32.42958 -30.54828 -29.31721 -26.84859 -25.49052 -24.23048 -21.83745 -21.24400 -20.79396 -17.59222 -16.20801 -15.46071 -15.07531 -14.42319 -14.21078 -13.95619 -13.45275 -13.08282 -12.75556 -12.58560 -12.29482 -12.08068 -11.91470 -11.55828 -11.11347 -11.01574 -10.76791 -10.63846 -10.53674 -10.35757 -10.23533 -9.80410 -9.40966 -8.92477 -8.60564 -8.30749 -8.14856 -7.79817 -5.95895 -4.01168 1.85241 1.91470 3.31793 3.38889 3.41490 4.22831 4.45588 5.17802 5.19886 5.34283 5.43941 5.52836 5.60329 5.72211 5.90183 5.97571 6.02782 6.06984 6.18484 6.23754 6.44432 6.44916 6.47734 6.65098 6.81129 6.87058 6.93676 6.99087 7.02916 7.13493 7.23726 7.35236 7.56274 7.62030 7.78814 8.03014 8.15005 8.49362 9.01871 9.62816 11.10226 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.045049 B = 0.007128 C = 0.006427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.390507 B = 3926.999746 C = 4355.790733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.105 4.105 3 C -0.135 4.135 4 C -0.126 4.126 5 C -0.068 4.068 6 C -0.051 4.051 7 C -0.124 4.124 8 C -0.050 4.050 9 H 0.062 0.938 10 C -0.128 4.128 11 C 0.056 3.944 12 H 0.027 0.973 13 C -0.508 4.508 14 H 0.060 0.940 15 C 0.060 3.940 16 N -0.890 5.890 17 Si 0.887 3.113 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.275 1.275 21 C -0.112 4.112 22 C -0.082 4.082 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.028 0.972 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.259 0.741 33 H 0.094 0.906 34 H 0.037 0.963 35 H 0.068 0.932 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.370 5.539 2.532 12.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.105 4.105 3 C -0.153 4.153 4 C -0.144 4.144 5 C -0.068 4.068 6 C -0.051 4.051 7 C -0.142 4.142 8 C -0.068 4.068 9 H 0.080 0.920 10 C -0.185 4.185 11 C 0.038 3.962 12 H 0.045 0.955 13 C -0.546 4.546 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.529 5.529 17 Si 0.716 3.284 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.150 4.150 22 C -0.119 4.119 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.193 5.589 2.473 11.885 hybrid contribution 0.523 -0.712 0.079 0.887 sum -9.670 4.877 2.552 11.127 Atomic orbital electron populations 1.20700 0.91984 1.02078 1.01633 1.19697 0.95375 0.93436 1.01980 1.20761 0.94157 0.96908 1.03444 1.21139 0.94020 0.97539 1.01705 1.19917 0.96659 0.91979 0.98242 1.20011 0.92785 0.95798 0.96458 1.21047 0.93971 0.96989 1.02189 1.20192 0.98888 0.90628 0.97098 0.91972 1.21783 0.98712 1.01878 0.96083 1.18638 0.87843 0.94428 0.95329 0.95494 1.21257 0.94680 0.97126 1.41571 0.92237 1.24962 0.97707 0.96142 0.95215 1.69894 1.10108 1.29323 1.43616 0.86668 0.79063 0.84229 0.78475 1.20823 1.21349 1.19973 1.21660 1.03369 0.91856 0.98101 1.20609 0.89843 1.00403 1.01048 0.91847 0.92159 0.91995 0.87082 0.86895 0.86877 0.95312 0.93120 0.91280 0.93121 0.88730 0.94440 0.91408 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.02 36.01 0.36 -0.87 16 2 C -0.10 -1.60 5.87 -104.73 -0.61 -2.21 16 3 C -0.13 -2.04 9.71 -39.68 -0.39 -2.43 16 4 C -0.13 -2.10 9.61 -39.44 -0.38 -2.48 16 5 C -0.07 -1.31 5.74 -104.61 -0.60 -1.91 16 6 C -0.05 -0.99 5.01 -104.62 -0.52 -1.51 16 7 C -0.12 -2.12 9.13 -39.45 -0.36 -2.48 16 8 C -0.05 -1.05 2.37 -91.94 -0.22 -1.27 16 9 H 0.06 1.30 8.12 -51.93 -0.42 0.88 16 10 C -0.13 -2.51 8.54 37.16 0.32 -2.19 16 11 C 0.06 1.38 1.90 -91.78 -0.17 1.20 16 12 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 13 C -0.51 -13.52 7.82 -34.44 -0.27 -13.79 16 14 H 0.06 1.55 6.06 -52.49 -0.32 1.23 16 15 C 0.06 1.64 5.28 -17.82 -0.09 1.55 16 16 N -0.89 -25.06 11.40 55.43 0.63 -24.43 16 17 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 C -0.11 -2.62 5.10 -26.74 -0.14 -2.75 16 22 C -0.08 -1.65 5.67 -28.05 -0.16 -1.81 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 25 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 26 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 27 H 0.11 1.64 8.05 -52.49 -0.42 1.22 16 28 H 0.11 1.76 8.05 -52.49 -0.42 1.34 16 29 H 0.03 0.49 8.06 -51.93 -0.42 0.07 16 30 H 0.05 1.01 6.45 -51.93 -0.34 0.68 16 31 H 0.07 1.41 6.06 -51.93 -0.31 1.10 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.09 2.46 6.01 -51.93 -0.31 2.15 16 34 H 0.04 0.86 6.27 -51.93 -0.33 0.53 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 36 H 0.05 0.96 8.13 -51.93 -0.42 0.54 16 LS Contribution 282.21 15.07 4.25 4.25 Total: -1.00 -27.75 282.21 -8.75 -36.50 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -5.38 Total: 0.64 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: -3.24 Total: -32.94 kcal Atomic # 7 Polarization: -25.06 SS G_CDS: 0.63 Total: -24.43 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.75 -8.75 -36.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260523999.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.006 kcal (2) G-P(sol) polarization free energy of solvation -27.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds