Wall clock time and date at job start Mon Mar 30 2020 03:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38260 * 120.11430 * 2 1 4 4 C 1.37937 * 119.77711 * 180.09693 * 3 2 1 5 5 C 1.38914 * 120.53887 * 0.02562 * 4 3 2 6 6 C 1.37667 * 119.68225 * 359.76502 * 5 4 3 7 7 C 1.37933 * 120.11598 * 179.97438 * 2 1 3 8 8 C 1.50635 * 122.55992 * 180.38675 * 6 5 4 9 9 H 1.09000 * 109.25077 * 221.98010 * 8 6 5 10 10 C 1.52997 * 109.25617 * 102.51233 * 8 6 5 11 11 C 1.52739 * 110.55950 * 342.24036 * 8 6 5 12 12 H 1.08995 * 109.68112 * 291.35793 * 11 8 6 13 13 C 1.50702 * 109.67671 * 170.80230 * 11 8 6 14 14 H 1.07994 * 120.00618 * 0.02562 * 13 11 8 15 15 C 1.37877 * 119.99504 * 179.97438 * 13 11 8 16 16 N 1.31514 * 120.00100 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99889 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47097 * 90.00271 * 17 15 13 19 19 H 1.48501 * 109.46929 * 210.00305 * 17 15 13 20 20 H 1.48500 * 109.46815 * 330.00382 * 17 15 13 21 21 C 1.53242 * 108.43034 * 51.11063 * 11 8 6 22 22 C 1.50632 * 117.74963 * 179.43148 * 5 4 3 23 23 H 1.08999 * 109.46756 * 270.01850 * 1 2 3 24 24 H 1.08995 * 109.47078 * 30.02284 * 1 2 3 25 25 H 1.08996 * 109.47067 * 150.02175 * 1 2 3 26 26 H 1.08002 * 120.11532 * 0.07607 * 3 2 1 27 27 H 1.07991 * 119.73290 * 180.02562 * 4 3 2 28 28 H 1.07999 * 119.72791 * 359.97438 * 7 2 1 29 29 H 1.09002 * 109.47153 * 59.46494 * 10 8 6 30 30 H 1.09001 * 109.46832 * 299.46685 * 10 8 6 31 31 H 1.09004 * 109.47261 * 179.46666 * 10 8 6 32 32 H 0.97004 * 119.99638 * 180.02562 * 16 15 13 33 33 H 1.09002 * 109.69152 * 170.39782 * 21 11 8 34 34 H 1.08998 * 109.69084 * 49.83431 * 21 11 8 35 35 H 1.08997 * 109.25232 * 282.82858 * 22 5 4 36 36 H 1.08999 * 109.25031 * 42.26637 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1960 0.0000 4 6 3.5800 1.1879 -0.0020 5 6 4.2788 -0.0127 -0.0046 6 6 3.5881 -1.2035 -0.0002 7 6 2.1991 -1.1931 0.0005 8 6 4.2796 -2.5418 0.0059 9 1 3.7655 -3.2151 -0.6800 10 6 4.2320 -3.1278 1.4184 11 6 5.7361 -2.3950 -0.4297 12 1 5.7784 -2.1292 -1.4859 13 6 6.4670 -3.6932 -0.2026 14 1 5.9439 -4.5421 0.2121 15 6 7.8035 -3.7973 -0.5252 16 7 8.4404 -2.7637 -1.0307 17 14 8.7094 -5.4067 -0.2444 18 1 8.6052 -6.2521 -1.4607 19 1 10.1392 -5.1263 0.0426 20 1 8.1039 -6.1209 0.9082 21 6 6.3829 -1.2865 0.4078 22 6 5.7837 0.0517 -0.0199 23 1 -0.3633 0.0003 1.0277 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3633 -0.8901 -0.5135 26 1 1.6644 2.1335 0.0012 27 1 4.1211 2.1224 -0.0016 28 1 1.6565 -2.1270 0.0014 29 1 3.1936 -3.2430 1.7292 30 1 4.7453 -2.4571 2.1075 31 1 4.7232 -4.1009 1.4248 32 1 9.3806 -2.8372 -1.2580 33 1 7.4594 -1.2780 0.2371 34 1 6.1796 -1.4587 1.4647 35 1 6.1229 0.2917 -1.0276 36 1 6.1171 0.8305 0.6660 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260523999.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:45 Heat of formation + Delta-G solvation = -18.053911 kcal Electronic energy + Delta-G solvation = -16089.043761 eV Core-core repulsion = 13728.970457 eV Total energy + Delta-G solvation = -2360.073304 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.05052 -37.88618 -34.63248 -34.17751 -32.04875 -30.75585 -28.46550 -26.99489 -25.96469 -23.31921 -22.84906 -22.26471 -19.23857 -18.19146 -16.98517 -16.63127 -16.02213 -15.66473 -15.51234 -14.66152 -14.61206 -14.40716 -14.17776 -13.70106 -13.46316 -13.27142 -12.95523 -12.82904 -12.73977 -12.39174 -12.30315 -12.14342 -11.96249 -11.76738 -11.63524 -11.27690 -10.71848 -10.51979 -10.32340 -9.50178 -9.14130 -8.04429 -6.16574 0.55874 0.60466 1.42281 1.43342 1.52872 2.45793 2.92116 3.23063 3.94914 4.00195 4.14850 4.23117 4.36362 4.42513 4.47578 4.65242 4.71552 4.76875 4.81958 4.89635 4.91914 4.98047 5.11200 5.16844 5.27248 5.31356 5.38674 5.42820 5.48660 5.52086 5.63135 5.74176 5.78995 6.00527 6.06111 6.18703 6.27189 6.45852 6.94291 7.50481 9.00742 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.045049 B = 0.007128 C = 0.006427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.390507 B = 3926.999746 C = 4355.790733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.099 4.099 3 C -0.130 4.130 4 C -0.127 4.127 5 C -0.097 4.097 6 C -0.075 4.075 7 C -0.133 4.133 8 C -0.045 4.045 9 H 0.056 0.944 10 C -0.118 4.118 11 C 0.055 3.945 12 H -0.015 1.015 13 C -0.522 4.522 14 H 0.062 0.938 15 C 0.010 3.990 16 N -0.919 5.919 17 Si 0.950 3.050 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.266 1.266 21 C -0.104 4.104 22 C -0.074 4.074 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.147 0.853 27 H 0.133 0.867 28 H 0.125 0.875 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.258 0.742 33 H 0.062 0.938 34 H 0.036 0.964 35 H 0.053 0.947 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.697 6.229 3.317 14.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.099 4.099 3 C -0.148 4.148 4 C -0.145 4.145 5 C -0.097 4.097 6 C -0.075 4.075 7 C -0.151 4.151 8 C -0.064 4.064 9 H 0.074 0.926 10 C -0.175 4.175 11 C 0.037 3.963 12 H 0.004 0.996 13 C -0.560 4.560 14 H 0.080 0.920 15 C -0.188 4.188 16 N -0.559 5.559 17 Si 0.776 3.224 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.191 1.191 21 C -0.142 4.142 22 C -0.111 4.111 23 H 0.097 0.903 24 H 0.098 0.902 25 H 0.087 0.913 26 H 0.164 0.836 27 H 0.151 0.849 28 H 0.143 0.857 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.532 6.275 3.261 14.390 hybrid contribution 1.177 -0.880 -0.191 1.482 sum -11.355 5.395 3.070 12.941 Atomic orbital electron populations 1.20775 0.88954 1.03482 1.03012 1.20165 0.97560 0.92624 0.99572 1.21193 0.93581 0.98462 1.01584 1.21358 0.95062 0.97157 1.00918 1.19890 0.95745 0.93297 1.00736 1.19935 0.94093 0.94738 0.98697 1.21197 0.92891 0.98628 1.02398 1.20026 0.96446 0.92264 0.97624 0.92580 1.21674 1.00184 1.00647 0.95015 1.18547 0.90567 0.94096 0.93115 0.99642 1.21624 0.95140 0.98051 1.41211 0.92039 1.25729 0.98639 0.99228 0.95166 1.70044 1.10206 1.31138 1.44535 0.85679 0.77726 0.80446 0.78547 1.20475 1.21190 1.19082 1.21442 1.01385 0.93635 0.97732 1.20446 0.91300 0.98840 1.00523 0.90314 0.90226 0.91252 0.83573 0.84922 0.85677 0.92524 0.93959 0.92596 0.93264 0.91981 0.94546 0.92889 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 10.02 71.24 0.71 -1.24 16 2 C -0.10 -2.67 5.87 -19.93 -0.12 -2.78 16 3 C -0.13 -3.45 9.71 22.20 0.22 -3.24 16 4 C -0.13 -3.94 9.61 22.36 0.21 -3.72 16 5 C -0.10 -3.69 5.74 -19.86 -0.11 -3.80 16 6 C -0.07 -2.89 5.01 -19.86 -0.10 -2.99 16 7 C -0.13 -4.28 9.13 22.36 0.20 -4.08 16 8 C -0.05 -1.94 2.37 -11.65 -0.03 -1.97 16 9 H 0.06 2.41 8.12 -2.39 -0.02 2.39 16 10 C -0.12 -4.63 8.54 71.98 0.61 -4.02 16 11 C 0.06 2.84 1.90 -11.54 -0.02 2.82 16 12 H -0.01 -0.86 8.10 -2.39 -0.02 -0.87 16 13 C -0.52 -28.70 7.82 25.60 0.20 -28.50 16 14 H 0.06 3.28 6.06 -2.91 -0.02 3.26 16 15 C 0.01 0.58 5.28 84.65 0.45 1.02 16 16 N -0.92 -53.80 11.40 21.45 0.24 -53.56 16 17 Si 0.95 43.90 29.54 68.60 2.03 45.93 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 C -0.10 -5.07 5.10 30.59 0.16 -4.92 16 22 C -0.07 -3.06 5.67 29.74 0.17 -2.89 16 23 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.08 1.19 8.09 -2.39 -0.02 1.18 16 25 H 0.07 1.20 8.09 -2.39 -0.02 1.18 16 26 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 27 H 0.13 3.49 8.05 -2.92 -0.02 3.47 16 28 H 0.13 3.61 8.05 -2.91 -0.02 3.59 16 29 H 0.06 1.87 8.06 -2.39 -0.02 1.85 16 30 H 0.04 1.69 6.45 -2.39 -0.02 1.68 16 31 H 0.06 2.29 6.06 -2.38 -0.01 2.28 16 32 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 33 H 0.06 3.41 6.01 -2.39 -0.01 3.40 16 34 H 0.04 1.73 6.27 -2.39 -0.01 1.72 16 35 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.07 2.63 8.13 -2.39 -0.02 2.61 16 Total: -1.00 -61.55 282.21 5.87 -55.68 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 1.05 Total: 12.26 kcal Atomic # 6 Polarization: -62.86 SS G_CDS: 2.55 Total: -60.30 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.24 Total: -53.56 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -61.55 5.87 -55.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260523999.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.627 kcal (2) G-P(sol) polarization free energy of solvation -61.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds