Wall clock time and date at job start Mon Mar 30 2020 02:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46870 * 2 1 4 4 C 1.50699 * 109.47511 * 239.99947 * 2 1 3 5 5 N 1.34013 * 126.14020 * 60.01858 * 4 2 1 6 6 H 0.97005 * 124.98633 * 359.97355 * 5 4 2 7 7 N 1.39880 * 110.01331 * 180.02562 * 5 4 2 8 8 C 1.31770 * 109.18159 * 0.02562 * 7 5 4 9 9 C 1.46009 * 134.02209 * 180.02562 * 8 7 5 10 10 C 1.35062 * 119.61868 * 179.24475 * 9 8 7 11 11 C 1.45972 * 120.92696 * 0.61639 * 10 9 8 12 12 C 1.40996 * 119.51623 * 179.61706 * 11 10 9 13 13 H 1.08001 * 120.00443 * 329.80279 * 12 11 10 14 14 C 1.39779 * 120.00129 * 149.79699 * 12 11 10 15 15 N 1.30947 * 120.00533 * 161.60407 * 14 12 11 16 16 Si 1.86806 * 119.99709 * 341.60682 * 14 12 11 17 17 H 1.48496 * 109.47173 * 95.41507 * 16 14 12 18 18 H 1.48497 * 109.46998 * 215.41752 * 16 14 12 19 19 H 1.48507 * 109.46936 * 335.41727 * 16 14 12 20 20 C 1.39780 * 120.96465 * 359.60093 * 11 10 9 21 21 C 1.39017 * 126.14068 * 239.71579 * 4 2 1 22 22 H 1.09007 * 109.47224 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47297 * 60.00363 * 1 2 3 24 24 H 1.08995 * 109.47358 * 299.99853 * 1 2 3 25 25 H 1.09003 * 109.47249 * 119.99456 * 2 1 3 26 26 H 1.09004 * 109.47515 * 59.99709 * 3 2 1 27 27 H 1.09002 * 109.47490 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47243 * 299.99636 * 3 2 1 29 29 H 1.08004 * 120.18831 * 359.96884 * 9 8 7 30 30 H 1.07994 * 119.53628 * 180.21323 * 10 9 8 31 31 H 0.96990 * 120.00232 * 180.02562 * 15 14 12 32 32 H 1.07997 * 120.06597 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 1.7860 -0.3613 -2.5006 6 1 1.2487 0.3985 -2.7744 7 7 2.4166 -1.2542 -3.3734 8 6 3.0592 -2.1652 -2.6710 9 6 3.8774 -3.3236 -3.0184 10 6 4.4245 -4.0729 -2.0369 11 6 4.1986 -3.7493 -0.6316 12 6 4.7775 -4.5567 0.3689 13 1 4.9479 -5.6070 0.1839 14 6 5.1312 -3.9977 1.6003 15 7 5.3241 -4.7711 2.6392 16 14 5.3284 -2.1473 1.7639 17 1 4.0632 -1.5575 2.2703 18 1 6.4291 -1.8490 2.7149 19 1 5.6497 -1.5645 0.4363 20 6 3.4170 -2.6506 -0.2632 21 6 2.8395 -1.8421 -1.2516 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5138 0.8900 26 1 1.6765 1.9564 0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 4.0538 -3.5728 -4.0544 30 1 5.0323 -4.9274 -2.2955 31 1 5.5692 -4.3831 3.4938 32 1 3.2597 -2.4242 0.7810 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260688893.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:54 Heat of formation + Delta-G solvation = 65.831393 kcal Electronic energy + Delta-G solvation = -15684.948859 eV Core-core repulsion = 13224.972752 eV Total energy + Delta-G solvation = -2459.976108 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.22372 -36.18553 -35.00753 -33.20742 -30.55862 -29.78096 -28.36773 -27.05771 -24.80194 -22.83463 -21.60896 -20.45344 -18.62502 -17.47746 -16.76885 -15.40148 -15.28050 -14.47722 -14.13596 -13.72820 -13.49001 -12.97899 -12.80521 -12.75124 -12.50203 -12.16437 -11.54570 -11.22707 -11.08081 -10.87150 -10.75531 -10.55498 -10.38269 -10.11605 -9.89882 -9.36670 -9.05727 -8.76905 -7.78954 -6.91021 -6.70099 -4.30482 1.68383 2.86858 3.18574 3.26742 3.35068 3.45720 3.50628 4.07501 4.48273 4.93449 5.05953 5.26114 5.34341 5.41717 5.60141 5.64457 5.83173 5.84838 5.95841 6.11373 6.24066 6.29605 6.36726 6.43297 6.62565 6.80200 7.06288 7.22006 7.38726 7.63541 7.77702 7.93825 8.02423 8.35791 8.49272 8.70120 8.85002 10.10772 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.023232 B = 0.011287 C = 0.008425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.965683 B = 2480.057204 C = 3322.639405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.022 4.022 3 C -0.145 4.145 4 C 0.013 3.987 5 N -0.449 5.449 6 H 0.425 0.575 7 N -0.314 5.314 8 C 0.059 3.941 9 C -0.107 4.107 10 C -0.080 4.080 11 C 0.066 3.934 12 C -0.432 4.432 13 H 0.091 0.909 14 C 0.082 3.918 15 N -0.812 5.812 16 Si 0.917 3.083 17 H -0.272 1.272 18 H -0.298 1.298 19 H -0.244 1.244 20 C -0.273 4.273 21 C -0.099 4.099 22 H 0.060 0.940 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.092 0.908 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.284 0.716 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.172 8.681 -2.939 10.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.043 4.043 3 C -0.202 4.202 4 C -0.118 4.118 5 N -0.154 5.154 6 H 0.267 0.733 7 N -0.141 5.141 8 C -0.097 4.097 9 C -0.128 4.128 10 C -0.103 4.103 11 C 0.063 3.937 12 C -0.461 4.461 13 H 0.108 0.892 14 C -0.136 4.136 15 N -0.436 5.436 16 Si 0.745 3.255 17 H -0.198 1.198 18 H -0.227 1.227 19 H -0.168 1.168 20 C -0.295 4.295 21 C -0.108 4.108 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.110 0.890 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.094 0.906 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.353 8.947 -3.861 11.118 hybrid contribution 0.011 0.883 0.910 1.268 sum -5.342 9.830 -2.950 11.570 Atomic orbital electron populations 1.21845 0.94735 1.02284 1.01206 1.19618 0.95174 0.95044 0.94420 1.21865 1.01756 0.95332 1.01289 1.20603 1.05609 0.99332 0.86243 1.45514 1.41677 1.24826 1.03403 0.73347 1.77053 1.17594 1.05029 1.14473 1.21872 0.99645 0.96105 0.92103 1.20604 0.99878 0.94121 0.98162 1.22168 0.97152 0.98022 0.92929 1.18306 0.92106 0.92369 0.90937 1.19375 1.33625 0.97766 0.95350 0.89150 1.26148 0.91865 1.01144 0.94418 1.69750 1.34156 1.38706 1.01006 0.86140 0.77430 0.82442 0.79522 1.19849 1.22655 1.16763 1.19741 1.10760 1.03553 0.95465 1.19069 1.01892 0.96157 0.93661 0.92080 0.93318 0.92286 0.89005 0.92220 0.92257 0.93231 0.86931 0.86445 0.90553 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.18 37.16 0.34 -1.49 16 2 C -0.02 -0.35 3.34 -91.77 -0.31 -0.65 16 3 C -0.14 -1.90 9.17 37.16 0.34 -1.56 16 4 C 0.01 0.24 5.82 -81.35 -0.47 -0.23 16 5 N -0.45 -8.04 7.18 34.00 0.24 -7.80 16 6 H 0.43 5.90 8.96 -182.76 -1.64 4.26 16 7 N -0.31 -6.62 12.67 34.26 0.43 -6.19 16 8 C 0.06 1.35 7.66 -81.13 -0.62 0.73 16 9 C -0.11 -2.25 10.26 -37.60 -0.39 -2.63 16 10 C -0.08 -1.76 9.85 -37.62 -0.37 -2.13 16 11 C 0.07 1.66 5.23 -105.18 -0.55 1.11 16 12 C -0.43 -11.43 9.53 -37.96 -0.36 -11.80 16 13 H 0.09 2.45 8.06 -52.49 -0.42 2.03 16 14 C 0.08 2.15 5.38 -17.35 -0.09 2.06 16 15 N -0.81 -21.54 13.93 55.54 0.77 -20.77 16 16 Si 0.92 21.33 24.51 -169.99 -4.17 17.16 16 17 H -0.27 -6.14 6.71 56.52 0.38 -5.76 16 18 H -0.30 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.24 -5.91 6.88 56.52 0.39 -5.52 16 20 C -0.27 -6.76 7.07 -38.29 -0.27 -7.03 16 21 C -0.10 -2.29 6.23 -105.25 -0.66 -2.95 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.09 1.59 7.83 -51.93 -0.41 1.19 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.11 2.02 8.06 -52.48 -0.42 1.60 16 30 H 0.12 2.26 8.06 -52.49 -0.42 1.83 16 31 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 32 H 0.10 2.46 4.51 -52.49 -0.24 2.22 16 LS Contribution 270.34 15.07 4.07 4.07 Total: -1.00 -29.14 270.34 -7.30 -36.44 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.26 Total: 3.65 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: -3.41 Total: -26.58 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 1.45 Total: -34.75 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.17 Total: 17.16 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.14 -7.30 -36.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260688893.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.272 kcal (2) G-P(sol) polarization free energy of solvation -29.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds