Wall clock time and date at job start Mon Mar 30 2020 02:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46870 * 2 1 4 4 C 1.50699 * 109.47511 * 239.99947 * 2 1 3 5 5 N 1.34013 * 126.14020 * 60.01858 * 4 2 1 6 6 H 0.97005 * 124.98633 * 359.97355 * 5 4 2 7 7 N 1.39880 * 110.01331 * 180.02562 * 5 4 2 8 8 C 1.31770 * 109.18159 * 0.02562 * 7 5 4 9 9 C 1.46009 * 134.02209 * 180.02562 * 8 7 5 10 10 C 1.35062 * 119.61868 * 179.24475 * 9 8 7 11 11 C 1.45972 * 120.92696 * 0.61639 * 10 9 8 12 12 C 1.40996 * 119.51623 * 179.61706 * 11 10 9 13 13 H 1.08001 * 120.00443 * 329.80279 * 12 11 10 14 14 C 1.39779 * 120.00129 * 149.79699 * 12 11 10 15 15 N 1.30947 * 120.00533 * 161.60407 * 14 12 11 16 16 Si 1.86806 * 119.99709 * 341.60682 * 14 12 11 17 17 H 1.48496 * 109.47173 * 95.41507 * 16 14 12 18 18 H 1.48497 * 109.46998 * 215.41752 * 16 14 12 19 19 H 1.48507 * 109.46936 * 335.41727 * 16 14 12 20 20 C 1.39780 * 120.96465 * 359.60093 * 11 10 9 21 21 C 1.39017 * 126.14068 * 239.71579 * 4 2 1 22 22 H 1.09007 * 109.47224 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47297 * 60.00363 * 1 2 3 24 24 H 1.08995 * 109.47358 * 299.99853 * 1 2 3 25 25 H 1.09003 * 109.47249 * 119.99456 * 2 1 3 26 26 H 1.09004 * 109.47515 * 59.99709 * 3 2 1 27 27 H 1.09002 * 109.47490 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47243 * 299.99636 * 3 2 1 29 29 H 1.08004 * 120.18831 * 359.96884 * 9 8 7 30 30 H 1.07994 * 119.53628 * 180.21323 * 10 9 8 31 31 H 0.96990 * 120.00232 * 180.02562 * 15 14 12 32 32 H 1.07997 * 120.06597 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 1.7860 -0.3613 -2.5006 6 1 1.2487 0.3985 -2.7744 7 7 2.4166 -1.2542 -3.3734 8 6 3.0592 -2.1652 -2.6710 9 6 3.8774 -3.3236 -3.0184 10 6 4.4245 -4.0729 -2.0369 11 6 4.1986 -3.7493 -0.6316 12 6 4.7775 -4.5567 0.3689 13 1 4.9479 -5.6070 0.1839 14 6 5.1312 -3.9977 1.6003 15 7 5.3241 -4.7711 2.6392 16 14 5.3284 -2.1473 1.7639 17 1 4.0632 -1.5575 2.2703 18 1 6.4291 -1.8490 2.7149 19 1 5.6497 -1.5645 0.4363 20 6 3.4170 -2.6506 -0.2632 21 6 2.8395 -1.8421 -1.2516 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5138 0.8900 26 1 1.6765 1.9564 0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 4.0538 -3.5728 -4.0544 30 1 5.0323 -4.9274 -2.2955 31 1 5.5692 -4.3831 3.4938 32 1 3.2597 -2.4242 0.7810 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260688893.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:53 Heat of formation + Delta-G solvation = 47.668930 kcal Electronic energy + Delta-G solvation = -15685.736443 eV Core-core repulsion = 13224.972752 eV Total energy + Delta-G solvation = -2460.763691 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.87990 -37.92052 -36.36228 -35.05541 -32.27931 -31.49975 -30.06377 -28.07420 -26.58659 -24.54141 -23.03080 -22.23057 -20.24693 -19.33760 -18.34574 -17.14113 -16.97426 -15.89725 -15.69960 -15.38367 -15.11975 -14.62456 -14.34506 -14.30488 -13.95127 -13.42130 -13.09120 -12.73753 -12.64271 -12.36671 -12.22150 -12.10625 -11.90493 -11.83103 -11.67681 -11.23030 -10.80665 -10.55276 -9.49547 -8.84427 -8.48363 -6.27033 0.01307 1.04451 1.29369 1.42148 1.51125 1.68333 2.00717 2.18821 2.61025 3.44488 3.58722 3.67337 3.89522 4.18300 4.19890 4.45316 4.53914 4.66393 4.71515 4.76214 4.88559 4.96896 4.99268 5.10510 5.22474 5.31001 5.32534 5.46004 5.67370 5.82540 5.88460 6.08344 6.42949 6.54079 6.67525 6.89507 6.95070 8.23514 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.023232 B = 0.011287 C = 0.008425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.965683 B = 2480.057204 C = 3322.639405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.030 4.030 3 C -0.142 4.142 4 C 0.054 3.946 5 N -0.424 5.424 6 H 0.447 0.553 7 N -0.325 5.325 8 C 0.042 3.958 9 C -0.099 4.099 10 C -0.095 4.095 11 C 0.044 3.956 12 C -0.466 4.466 13 H 0.066 0.934 14 C 0.050 3.950 15 N -0.852 5.852 16 Si 0.964 3.036 17 H -0.263 1.263 18 H -0.285 1.285 19 H -0.261 1.261 20 C -0.263 4.263 21 C -0.157 4.157 22 H 0.044 0.956 23 H 0.070 0.930 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.041 0.959 28 H 0.071 0.929 29 H 0.146 0.854 30 H 0.137 0.863 31 H 0.291 0.709 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.906 11.736 -3.971 14.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.051 4.051 3 C -0.199 4.199 4 C -0.080 4.080 5 N -0.130 5.130 6 H 0.293 0.707 7 N -0.154 5.154 8 C -0.113 4.113 9 C -0.120 4.120 10 C -0.117 4.117 11 C 0.040 3.960 12 C -0.496 4.496 13 H 0.084 0.916 14 C -0.164 4.164 15 N -0.480 5.480 16 Si 0.789 3.211 17 H -0.189 1.189 18 H -0.212 1.212 19 H -0.186 1.186 20 C -0.285 4.285 21 C -0.167 4.167 22 H 0.063 0.937 23 H 0.089 0.911 24 H 0.104 0.896 25 H 0.090 0.910 26 H 0.106 0.894 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.164 0.836 30 H 0.155 0.845 31 H 0.101 0.899 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.103 12.017 -4.924 14.803 hybrid contribution 0.322 0.152 1.073 1.130 sum -6.781 12.169 -3.852 14.454 Atomic orbital electron populations 1.21825 0.91909 1.02096 1.03734 1.19863 0.97456 0.96214 0.91524 1.21864 1.00705 0.93447 1.03900 1.21233 1.01780 0.97163 0.87833 1.45602 1.40193 1.24525 1.02691 0.70651 1.77042 1.18242 1.05367 1.14704 1.22213 1.00152 0.96900 0.92062 1.20950 0.98482 0.93032 0.99520 1.22285 0.98336 0.99323 0.91781 1.18495 0.92530 0.92676 0.92266 1.19359 1.36386 0.97121 0.96764 0.91597 1.26675 0.91673 1.03944 0.94114 1.69773 1.36649 1.39928 1.01608 0.85440 0.78003 0.78935 0.78675 1.18877 1.21198 1.18569 1.19851 1.09792 1.03308 0.95518 1.19365 1.04861 0.98542 0.93900 0.93656 0.91138 0.89561 0.90965 0.89435 0.93974 0.90976 0.83622 0.84495 0.89861 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.18 71.98 0.66 -2.28 16 2 C -0.03 -0.84 3.34 -11.54 -0.04 -0.88 16 3 C -0.14 -3.08 9.17 71.98 0.66 -2.42 16 4 C 0.05 1.94 5.82 42.41 0.25 2.19 16 5 N -0.42 -13.61 7.18 -46.34 -0.33 -13.94 16 6 H 0.45 10.21 8.96 -213.46 -1.91 8.30 16 7 N -0.32 -12.82 12.67 -45.53 -0.58 -13.39 16 8 C 0.04 1.84 7.66 43.53 0.33 2.17 16 9 C -0.10 -4.06 10.26 23.55 0.24 -3.82 16 10 C -0.10 -4.21 9.85 23.54 0.23 -3.98 16 11 C 0.04 2.24 5.23 -20.23 -0.11 2.13 16 12 C -0.47 -25.97 9.53 23.32 0.22 -25.75 16 13 H 0.07 3.84 8.06 -2.91 -0.02 3.82 16 14 C 0.05 2.70 5.38 85.20 0.46 3.15 16 15 N -0.85 -47.15 13.93 21.80 0.30 -46.85 16 16 Si 0.96 44.82 24.51 68.60 1.68 46.50 16 17 H -0.26 -11.64 6.71 99.48 0.67 -10.97 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 19 H -0.26 -12.72 6.88 99.48 0.68 -12.04 16 20 C -0.26 -13.14 7.07 23.11 0.16 -12.98 16 21 C -0.16 -7.13 6.23 -20.27 -0.13 -7.26 16 22 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 23 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.07 2.36 7.83 -2.39 -0.02 2.34 16 26 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.15 4.88 8.06 -2.91 -0.02 4.86 16 30 H 0.14 5.33 8.06 -2.91 -0.02 5.31 16 31 H 0.29 14.56 8.30 -92.72 -0.77 13.79 16 32 H 0.09 4.51 4.51 -2.91 -0.01 4.50 16 Total: -1.00 -64.97 270.34 3.18 -61.79 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -0.84 Total: 15.62 kcal Atomic # 6 Polarization: -52.67 SS G_CDS: 2.95 Total: -49.73 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -0.61 Total: -74.18 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.68 Total: 46.50 kcal Total: -64.97 3.18 -61.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260688893.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.455 kcal (2) G-P(sol) polarization free energy of solvation -64.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds