Wall clock time and date at job start Mon Mar 30 2020 02:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46934 * 2 1 4 4 C 1.50693 * 109.47417 * 239.99694 * 2 1 3 5 5 H 1.08000 * 120.00462 * 240.00230 * 4 2 1 6 6 C 1.37880 * 119.99827 * 60.00102 * 4 2 1 7 7 N 1.31519 * 119.99966 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00104 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47364 * 89.99481 * 8 6 4 10 10 H 1.48496 * 109.47218 * 209.99872 * 8 6 4 11 11 H 1.48498 * 109.46958 * 329.99680 * 8 6 4 12 12 C 1.50698 * 109.47268 * 119.99444 * 2 1 3 13 13 N 1.30112 * 124.94930 * 104.97375 * 12 2 1 14 14 C 1.35785 * 109.64631 * 180.02562 * 13 12 2 15 15 C 1.39735 * 133.60204 * 179.97438 * 14 13 12 16 16 C 1.36605 * 119.88505 * 180.02562 * 15 14 13 17 17 C 1.38772 * 120.67413 * 359.97438 * 16 15 14 18 18 C 1.37857 * 120.44773 * 359.97248 * 17 16 15 19 19 C 1.38836 * 119.69151 * 0.06034 * 18 17 16 20 20 N 1.36038 * 124.95255 * 285.00521 * 12 2 1 21 21 H 0.96999 * 126.35202 * 359.97261 * 20 12 2 22 22 H 1.09002 * 109.46939 * 300.00394 * 1 2 3 23 23 H 1.08994 * 109.47137 * 60.00385 * 1 2 3 24 24 H 1.08997 * 109.46931 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47085 * 180.02562 * 3 2 1 26 26 H 1.08994 * 109.46895 * 299.99763 * 3 2 1 27 27 H 1.09002 * 109.47629 * 60.00029 * 3 2 1 28 28 H 0.96999 * 119.99463 * 180.02562 * 7 6 4 29 29 H 1.08000 * 120.05646 * 359.97438 * 15 14 13 30 30 H 1.07999 * 119.66329 * 179.72373 * 16 15 14 31 31 H 1.07998 * 119.77865 * 180.02562 * 17 16 15 32 32 H 1.07997 * 120.15633 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 1.3429 -2.1618 -4.4117 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7583 -3.7121 12 6 2.0324 -0.7103 1.2305 13 7 2.5406 -1.9079 1.2445 14 6 2.8894 -2.2410 2.5138 15 6 3.4634 -3.3780 3.0886 16 6 3.6993 -3.4155 4.4336 17 6 3.3750 -2.3334 5.2397 18 6 2.8088 -1.2009 4.6943 19 6 2.5611 -1.1449 3.3294 20 7 2.0200 -0.1930 2.4886 21 1 1.6924 0.6827 2.7470 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.1300 1.4426 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9565 0.8900 28 1 0.7082 1.1607 -3.4844 29 1 3.7194 -4.2260 2.4707 30 1 4.1390 -4.2978 4.8748 31 1 3.5681 -2.3785 6.3013 32 1 2.5587 -0.3614 5.3259 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260710216.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:31 Heat of formation + Delta-G solvation = 61.405933 kcal Electronic energy + Delta-G solvation = -15674.672167 eV Core-core repulsion = 13214.504157 eV Total energy + Delta-G solvation = -2460.168010 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.51061 -37.17448 -35.05855 -32.55253 -31.24102 -29.51108 -28.25357 -25.88331 -25.16587 -22.81892 -21.86006 -20.97393 -19.09379 -17.39455 -16.52709 -15.81721 -15.06701 -14.59042 -14.34842 -13.85010 -13.56722 -13.17477 -12.71248 -12.10822 -11.70790 -11.41096 -11.36541 -11.12591 -10.97826 -10.68149 -10.62811 -10.31278 -10.12405 -9.89914 -9.86534 -9.24957 -8.77794 -8.40190 -7.90578 -7.53137 -6.03518 -4.08801 1.43447 1.93402 3.33532 3.39532 3.44393 3.53871 3.55612 4.36396 4.44875 4.85983 5.13546 5.26092 5.30943 5.53190 5.77863 5.86503 6.04873 6.13063 6.42273 6.46085 6.58661 6.66516 6.73194 6.81426 6.87132 7.03141 7.09097 7.33775 7.36241 7.60119 7.81586 7.99159 8.10209 8.28159 8.79287 9.00511 9.56398 11.00370 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.039980 B = 0.007507 C = 0.006624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.181194 B = 3728.907011 C = 4226.122226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.132 3.868 3 C -0.134 4.134 4 C -0.489 4.489 5 H 0.078 0.922 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.901 3.099 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.343 3.657 13 N -0.491 5.491 14 C 0.052 3.948 15 C -0.072 4.072 16 C -0.137 4.137 17 C -0.124 4.124 18 C -0.110 4.110 19 C 0.028 3.972 20 N -0.608 5.608 21 H 0.416 0.584 22 H 0.008 0.992 23 H 0.099 0.901 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.100 0.900 27 H 0.008 0.992 28 H 0.261 0.739 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.880 -1.443 11.289 11.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.130 3.870 3 C -0.193 4.193 4 C -0.528 4.528 5 H 0.096 0.904 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.729 3.271 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.198 1.198 12 C 0.077 3.923 13 N -0.210 5.210 14 C -0.068 4.068 15 C -0.092 4.092 16 C -0.157 4.157 17 C -0.143 4.143 18 C -0.131 4.131 19 C -0.082 4.082 20 N -0.218 5.218 21 H 0.254 0.746 22 H 0.027 0.973 23 H 0.117 0.883 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.118 0.882 27 H 0.027 0.973 28 H 0.071 0.929 29 H 0.141 0.859 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.947 -1.937 10.433 10.788 hybrid contribution 0.026 0.560 0.125 0.575 sum 1.973 -1.377 10.558 10.829 Atomic orbital electron populations 1.21859 0.95812 1.00125 1.00979 1.17147 0.92854 0.91470 0.85561 1.21911 0.99179 0.97057 1.01118 1.21095 1.31084 1.12292 0.88302 0.90367 1.24899 0.95026 0.95038 0.99002 1.69775 1.37245 1.23063 1.23453 0.86426 0.79461 0.79225 0.81971 1.20662 1.21400 1.19776 1.25009 0.92093 0.89395 0.85767 1.70693 1.19208 1.12904 1.18158 1.19441 1.02302 0.94637 0.90390 1.19971 0.98703 0.96052 0.94445 1.20486 1.03140 0.98884 0.93223 1.20675 1.01158 0.93310 0.99192 1.19860 1.03320 0.99229 0.90698 1.18971 1.03776 0.92249 0.93232 1.43396 1.53729 1.16717 1.07959 0.74599 0.97258 0.88287 0.94651 0.94816 0.88156 0.97321 0.92916 0.85905 0.86168 0.86140 0.86776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.23 37.16 0.31 -2.67 16 2 C 0.13 3.16 0.72 -156.81 -0.11 3.05 16 3 C -0.13 -3.00 8.11 37.16 0.30 -2.70 16 4 C -0.49 -13.18 7.88 -34.44 -0.27 -13.46 16 5 H 0.08 2.23 6.97 -52.49 -0.37 1.86 16 6 C 0.06 1.60 5.15 -17.82 -0.09 1.51 16 7 N -0.90 -23.64 9.35 55.43 0.52 -23.12 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.20 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.34 7.79 6.39 -154.82 -0.99 6.80 16 13 N -0.49 -11.80 10.06 -8.23 -0.08 -11.88 16 14 C 0.05 1.08 7.23 -84.70 -0.61 0.47 16 15 C -0.07 -1.24 10.05 -39.61 -0.40 -1.64 16 16 C -0.14 -1.91 9.96 -39.97 -0.40 -2.31 16 17 C -0.12 -1.65 10.03 -39.52 -0.40 -2.05 16 18 C -0.11 -1.64 10.07 -39.50 -0.40 -2.04 16 19 C 0.03 0.53 7.31 -83.98 -0.61 -0.09 16 20 N -0.61 -11.47 6.04 -8.00 -0.05 -11.52 16 21 H 0.42 6.52 8.43 -40.82 -0.34 6.18 16 22 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 23 H 0.10 2.44 6.07 -51.93 -0.32 2.13 16 24 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.10 2.43 6.07 -51.93 -0.32 2.12 16 27 H 0.01 0.15 7.59 -51.93 -0.39 -0.24 16 28 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 29 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 30 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 267.53 15.07 4.03 4.03 Total: -1.00 -28.92 267.53 -8.11 -37.03 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -3.83 Total: 4.39 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -3.67 Total: -15.13 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.39 Total: -46.52 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.92 -8.11 -37.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260710216.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.431 kcal (2) G-P(sol) polarization free energy of solvation -28.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds