Wall clock time and date at job start Mon Mar 30 2020 02:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46934 * 2 1 4 4 C 1.50693 * 109.47417 * 239.99694 * 2 1 3 5 5 H 1.08000 * 120.00462 * 240.00230 * 4 2 1 6 6 C 1.37880 * 119.99827 * 60.00102 * 4 2 1 7 7 N 1.31519 * 119.99966 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00104 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47364 * 89.99481 * 8 6 4 10 10 H 1.48496 * 109.47218 * 209.99872 * 8 6 4 11 11 H 1.48498 * 109.46958 * 329.99680 * 8 6 4 12 12 C 1.50698 * 109.47268 * 119.99444 * 2 1 3 13 13 N 1.30112 * 124.94930 * 104.97375 * 12 2 1 14 14 C 1.35785 * 109.64631 * 180.02562 * 13 12 2 15 15 C 1.39735 * 133.60204 * 179.97438 * 14 13 12 16 16 C 1.36605 * 119.88505 * 180.02562 * 15 14 13 17 17 C 1.38772 * 120.67413 * 359.97438 * 16 15 14 18 18 C 1.37857 * 120.44773 * 359.97248 * 17 16 15 19 19 C 1.38836 * 119.69151 * 0.06034 * 18 17 16 20 20 N 1.36038 * 124.95255 * 285.00521 * 12 2 1 21 21 H 0.96999 * 126.35202 * 359.97261 * 20 12 2 22 22 H 1.09002 * 109.46939 * 300.00394 * 1 2 3 23 23 H 1.08994 * 109.47137 * 60.00385 * 1 2 3 24 24 H 1.08997 * 109.46931 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47085 * 180.02562 * 3 2 1 26 26 H 1.08994 * 109.46895 * 299.99763 * 3 2 1 27 27 H 1.09002 * 109.47629 * 60.00029 * 3 2 1 28 28 H 0.96999 * 119.99463 * 180.02562 * 7 6 4 29 29 H 1.08000 * 120.05646 * 359.97438 * 15 14 13 30 30 H 1.07999 * 119.66329 * 179.72373 * 16 15 14 31 31 H 1.07998 * 119.77865 * 180.02562 * 17 16 15 32 32 H 1.07997 * 120.15633 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 1.3429 -2.1618 -4.4117 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7583 -3.7121 12 6 2.0324 -0.7103 1.2305 13 7 2.5406 -1.9079 1.2445 14 6 2.8894 -2.2410 2.5138 15 6 3.4634 -3.3780 3.0886 16 6 3.6993 -3.4155 4.4336 17 6 3.3750 -2.3334 5.2397 18 6 2.8088 -1.2009 4.6943 19 6 2.5611 -1.1449 3.3294 20 7 2.0200 -0.1930 2.4886 21 1 1.6924 0.6827 2.7470 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.1300 1.4426 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9565 0.8900 28 1 0.7082 1.1607 -3.4844 29 1 3.7194 -4.2260 2.4707 30 1 4.1390 -4.2978 4.8748 31 1 3.5681 -2.3785 6.3013 32 1 2.5587 -0.3614 5.3259 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260710216.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:30 Heat of formation + Delta-G solvation = 44.659460 kcal Electronic energy + Delta-G solvation = -15675.398348 eV Core-core repulsion = 13214.504157 eV Total energy + Delta-G solvation = -2460.894192 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.95746 -38.55001 -36.78505 -34.00886 -33.17276 -30.79737 -29.63318 -27.70704 -27.16327 -24.32988 -23.19059 -22.39349 -20.80439 -18.80786 -18.06718 -17.49916 -16.86203 -16.09483 -15.85140 -15.13052 -14.95822 -14.77761 -14.50371 -13.81025 -13.28256 -13.07620 -12.84957 -12.65268 -12.57059 -12.39494 -12.36906 -12.14713 -11.79683 -11.78275 -11.49562 -10.95519 -10.54192 -10.41184 -9.19633 -8.93457 -8.05061 -6.15574 0.14609 0.68715 1.42999 1.44969 1.55189 2.04688 2.12472 2.49836 3.03928 3.20859 3.48888 3.84630 4.24624 4.35559 4.51245 4.56266 4.62348 4.69346 4.78553 4.88914 4.94922 4.99430 5.21911 5.24333 5.48274 5.56760 5.64925 5.65457 5.77817 5.95786 6.02798 6.14504 6.34691 6.64172 6.88068 7.26637 7.51350 8.96433 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.039980 B = 0.007507 C = 0.006624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.181194 B = 3728.907011 C = 4226.122226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.127 3.873 3 C -0.122 4.122 4 C -0.510 4.510 5 H 0.051 0.949 6 C 0.027 3.973 7 N -0.904 5.904 8 Si 0.949 3.051 9 H -0.279 1.279 10 H -0.277 1.277 11 H -0.282 1.282 12 C 0.318 3.682 13 N -0.536 5.536 14 C 0.002 3.998 15 C -0.095 4.095 16 C -0.122 4.122 17 C -0.106 4.106 18 C -0.113 4.113 19 C 0.019 3.981 20 N -0.596 5.596 21 H 0.429 0.571 22 H 0.037 0.963 23 H 0.080 0.920 24 H 0.017 0.983 25 H 0.022 0.978 26 H 0.080 0.920 27 H 0.042 0.958 28 H 0.263 0.737 29 H 0.122 0.878 30 H 0.159 0.841 31 H 0.168 0.832 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.330 -1.428 14.132 14.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.124 3.876 3 C -0.181 4.181 4 C -0.549 4.549 5 H 0.070 0.930 6 C -0.172 4.172 7 N -0.543 5.543 8 Si 0.776 3.224 9 H -0.205 1.205 10 H -0.203 1.203 11 H -0.207 1.207 12 C 0.051 3.949 13 N -0.256 5.256 14 C -0.116 4.116 15 C -0.115 4.115 16 C -0.142 4.142 17 C -0.125 4.125 18 C -0.133 4.133 19 C -0.091 4.091 20 N -0.207 5.207 21 H 0.269 0.731 22 H 0.056 0.944 23 H 0.099 0.901 24 H 0.036 0.964 25 H 0.041 0.959 26 H 0.098 0.902 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.140 0.860 30 H 0.177 0.823 31 H 0.186 0.814 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.391 -1.905 13.295 13.642 hybrid contribution -0.048 0.449 -0.585 0.739 sum 2.342 -1.455 12.710 13.006 Atomic orbital electron populations 1.21685 0.95536 0.99041 1.01360 1.17039 0.93100 0.92010 0.85407 1.21724 0.98320 0.96318 1.01706 1.21193 1.31340 1.12051 0.90312 0.93046 1.25415 0.95309 0.95717 1.00773 1.69853 1.37286 1.23303 1.23872 0.85700 0.78465 0.78519 0.79764 1.20526 1.20251 1.20691 1.24482 0.94013 0.89734 0.86644 1.70517 1.20178 1.14044 1.20868 1.19920 1.04830 0.97033 0.89845 1.20258 0.99636 0.95401 0.96217 1.20982 1.01065 1.00457 0.91699 1.21301 0.98094 0.91760 1.01331 1.20358 1.02720 1.01066 0.89184 1.19369 1.03914 0.91325 0.94494 1.43154 1.53446 1.17288 1.06827 0.73051 0.94434 0.90094 0.96382 0.95926 0.90166 0.93929 0.92757 0.86008 0.82299 0.81442 0.83418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 8.23 71.98 0.59 -4.91 16 2 C 0.13 6.21 0.72 -53.67 -0.04 6.17 16 3 C -0.12 -5.50 8.11 71.98 0.58 -4.92 16 4 C -0.51 -28.62 7.88 25.60 0.20 -28.42 16 5 H 0.05 3.10 6.97 -2.91 -0.02 3.08 16 6 C 0.03 1.46 5.15 84.65 0.44 1.89 16 7 N -0.90 -48.44 9.35 21.45 0.20 -48.24 16 8 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 9 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 12 C 0.32 14.79 6.39 137.92 0.88 15.67 16 13 N -0.54 -26.81 10.06 -179.96 -1.81 -28.62 16 14 C 0.00 0.08 7.23 39.45 0.29 0.37 16 15 C -0.10 -3.21 10.05 22.25 0.22 -2.99 16 16 C -0.12 -2.95 9.96 22.02 0.22 -2.73 16 17 C -0.11 -2.26 10.03 22.31 0.22 -2.04 16 18 C -0.11 -2.91 10.07 22.32 0.22 -2.69 16 19 C 0.02 0.68 7.31 38.86 0.28 0.96 16 20 N -0.60 -22.08 6.04 -179.22 -1.08 -23.17 16 21 H 0.43 12.78 8.43 -92.71 -0.78 11.99 16 22 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.08 4.06 6.07 -2.39 -0.01 4.05 16 24 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.08 3.93 6.07 -2.39 -0.01 3.92 16 27 H 0.04 1.56 7.59 -2.39 -0.02 1.54 16 28 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 29 H 0.12 3.93 8.06 -2.91 -0.02 3.90 16 30 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 31 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 32 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -65.74 267.53 3.80 -61.94 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.35 Total: 15.16 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: 4.12 Total: -23.62 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -2.69 Total: -100.02 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -65.74 3.80 -61.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260710216.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.602 kcal (2) G-P(sol) polarization free energy of solvation -65.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds