Wall clock time and date at job start Mon Mar 30 2020 03:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36824 * 125.06514 * 2 1 4 4 C 1.34236 * 109.93935 * 179.97438 * 3 2 1 5 5 C 1.46493 * 106.99702 * 359.97438 * 4 3 2 6 6 C 1.37692 * 125.05901 * 179.97438 * 2 1 3 7 7 C 1.39085 * 133.51567 * 0.02562 * 6 2 1 8 8 C 1.37793 * 119.77920 * 179.97438 * 7 6 2 9 9 C 1.38788 * 120.66312 * 359.97438 * 8 7 6 10 10 C 1.36656 * 120.53190 * 0.02562 * 9 8 7 11 11 C 1.50705 * 120.12212 * 180.02562 * 10 9 8 12 12 H 1.09001 * 109.46718 * 144.97848 * 11 10 9 13 13 N 1.46906 * 109.46667 * 24.98196 * 11 10 9 14 14 C 1.50694 * 109.47515 * 264.98038 * 11 10 9 15 15 H 1.08006 * 119.99908 * 359.97438 * 14 11 10 16 16 C 1.37871 * 120.00207 * 179.97438 * 14 11 10 17 17 N 1.31519 * 119.99905 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00261 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47050 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47422 * 119.99976 * 18 16 14 21 21 H 1.48505 * 109.46885 * 239.99988 * 18 16 14 22 22 H 1.08994 * 109.47097 * 270.00936 * 1 2 3 23 23 H 1.09006 * 109.46314 * 30.00515 * 1 2 3 24 24 H 1.09001 * 109.47243 * 150.00148 * 1 2 3 25 25 H 1.07999 * 125.03296 * 359.97438 * 3 2 1 26 26 H 1.07999 * 126.49922 * 179.97438 * 4 3 2 27 27 H 1.08001 * 120.11475 * 359.71579 * 7 6 2 28 28 H 1.07995 * 119.66646 * 180.02562 * 8 7 6 29 29 H 1.08004 * 119.73718 * 179.97438 * 9 8 7 30 30 H 1.00895 * 110.99961 * 300.00257 * 13 11 10 31 31 H 1.00903 * 110.99865 * 63.95248 * 13 11 10 32 32 H 0.96995 * 120.00005 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2511 1.1199 0.0000 4 6 3.5470 0.7696 0.0006 5 6 3.5948 -0.6945 0.0016 6 6 2.2560 -1.1271 0.0005 7 6 1.9805 -2.4904 0.0007 8 6 3.0172 -3.3981 0.0007 9 6 4.3362 -2.9662 0.0000 10 6 4.6296 -1.6315 -0.0002 11 6 6.0651 -1.1727 -0.0015 12 1 6.1544 -0.2604 -0.5913 13 7 6.9131 -2.2196 -0.5873 14 6 6.5072 -0.9015 1.4134 15 1 5.8175 -1.0464 2.2318 16 6 7.7920 -0.4684 1.6632 17 7 8.6318 -0.2915 0.6666 18 14 8.3403 -0.1329 3.4172 19 1 7.2159 -0.4060 4.3480 20 1 9.4876 -1.0133 3.7542 21 1 8.7529 1.2881 3.5435 22 1 -0.3633 0.0002 1.0276 23 1 -0.3632 0.8900 -0.5140 24 1 -0.3634 -0.8900 -0.5138 25 1 1.8835 2.1354 -0.0004 26 1 4.3937 1.4401 0.0003 27 1 0.9575 -2.8365 0.0050 28 1 2.8012 -4.4562 0.0004 29 1 5.1371 -3.6907 0.0004 30 1 6.8476 -3.0761 -0.0582 31 1 6.6788 -2.3744 -1.5565 32 1 9.5358 0.0128 0.8423 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260749802.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:03 Heat of formation + Delta-G solvation = 68.636302 kcal Electronic energy + Delta-G solvation = -15597.226056 eV Core-core repulsion = 13137.371578 eV Total energy + Delta-G solvation = -2459.854478 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.73310 -37.02840 -34.18491 -32.30016 -31.44116 -28.82853 -28.37458 -26.03170 -25.62179 -22.71530 -21.12942 -20.75409 -18.73584 -16.53824 -16.34449 -15.67399 -14.99515 -14.88851 -14.44415 -14.12753 -13.36475 -13.24657 -12.66524 -12.56777 -12.28008 -12.17384 -11.92437 -11.40665 -10.98642 -10.86088 -10.68292 -10.48423 -10.37149 -9.63679 -9.26731 -8.63607 -8.33145 -7.58828 -7.06003 -6.86298 -5.78626 -3.92320 1.79699 2.29742 3.21186 3.27924 3.38104 3.46102 3.51165 4.50557 4.68434 4.87228 5.16483 5.22760 5.34455 5.41286 5.45860 5.59588 5.75757 6.04098 6.13179 6.28505 6.40638 6.45599 6.66331 6.79679 7.10899 7.20927 7.39087 7.42051 7.71113 7.78747 7.86256 8.00783 8.31900 8.74713 9.11325 9.25107 9.75127 11.25532 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029609 B = 0.008261 C = 0.007315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.439893 B = 3388.775654 C = 3826.815760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.497 5.497 3 C 0.017 3.983 4 C -0.168 4.168 5 C -0.104 4.104 6 C 0.095 3.905 7 C -0.166 4.166 8 C -0.090 4.090 9 C -0.174 4.174 10 C -0.015 4.015 11 C 0.254 3.746 12 H 0.049 0.951 13 N -0.811 5.811 14 C -0.520 4.520 15 H 0.053 0.947 16 C 0.083 3.917 17 N -0.849 5.849 18 Si 0.882 3.118 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.285 1.285 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.160 0.840 26 H 0.148 0.852 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.318 0.682 31 H 0.298 0.702 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.274 -0.581 -2.434 14.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.183 5.183 3 C -0.106 4.106 4 C -0.193 4.193 5 C -0.109 4.109 6 C -0.010 4.010 7 C -0.187 4.187 8 C -0.109 4.109 9 C -0.194 4.194 10 C -0.018 4.018 11 C 0.144 3.856 12 H 0.067 0.933 13 N -0.337 5.337 14 C -0.559 4.559 15 H 0.071 0.929 16 C -0.123 4.123 17 N -0.484 5.484 18 Si 0.710 3.290 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.212 1.212 22 H 0.079 0.921 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.177 0.823 26 H 0.166 0.834 27 H 0.123 0.877 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.131 0.869 31 H 0.108 0.892 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.796 0.021 -2.333 13.992 hybrid contribution -0.741 -0.317 0.954 1.249 sum -14.537 -0.296 -1.379 14.605 Atomic orbital electron populations 1.21765 0.78375 1.03326 1.02184 1.43661 1.05070 1.04519 1.65087 1.21616 0.90616 0.90519 1.07847 1.21829 0.95508 0.93713 1.08295 1.19083 0.91242 0.93527 1.07016 1.18310 0.90431 0.88040 1.04244 1.19687 0.98447 0.89304 1.11255 1.20679 0.92560 0.97965 0.99701 1.20438 0.95737 0.95715 1.07487 1.21031 0.99005 0.91815 0.89902 1.18167 0.79972 0.91292 0.96183 0.93304 1.59204 1.60413 1.11133 1.02958 1.20809 0.97262 1.47054 0.90783 0.92911 1.24932 0.96637 0.94682 0.96072 1.70121 1.04994 1.43439 1.29868 0.86723 0.78623 0.77715 0.85960 1.19936 1.21101 1.21151 0.92087 0.90576 0.90771 0.82270 0.83414 0.87699 0.86893 0.86633 0.86933 0.89158 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.89 11.03 59.85 0.66 1.55 16 2 N -0.50 -7.81 3.18 -121.80 -0.39 -8.19 16 3 C 0.02 0.26 11.29 -16.74 -0.19 0.07 16 4 C -0.17 -3.28 10.87 -37.67 -0.41 -3.69 16 5 C -0.10 -2.23 6.15 -105.14 -0.65 -2.87 16 6 C 0.09 1.78 6.81 -83.99 -0.57 1.21 16 7 C -0.17 -2.83 9.97 -39.43 -0.39 -3.23 16 8 C -0.09 -1.56 10.01 -39.54 -0.40 -1.96 16 9 C -0.17 -3.49 9.22 -39.95 -0.37 -3.86 16 10 C -0.01 -0.33 4.98 -104.69 -0.52 -0.85 16 11 C 0.25 6.47 2.77 -70.01 -0.19 6.28 16 12 H 0.05 1.37 8.04 -51.93 -0.42 0.96 16 13 N -0.81 -19.50 8.13 -6.65 -0.05 -19.55 16 14 C -0.52 -14.65 8.71 -34.45 -0.30 -14.95 16 15 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 16 C 0.08 2.35 5.39 -17.82 -0.10 2.26 16 17 N -0.85 -25.05 12.77 55.43 0.71 -24.34 16 18 Si 0.88 21.79 29.54 -169.99 -5.02 16.77 16 19 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 25 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 26 H 0.15 2.89 8.06 -52.49 -0.42 2.46 16 27 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16 28 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 29 H 0.12 2.20 6.25 -52.48 -0.33 1.87 16 30 H 0.32 7.27 7.20 -39.29 -0.28 6.99 16 31 H 0.30 6.45 9.06 -39.29 -0.36 6.10 16 32 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 275.33 15.07 4.15 4.15 Total: -1.00 -32.25 275.33 -7.91 -40.16 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -3.88 Total: 11.04 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -3.42 Total: -20.03 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.27 Total: -52.09 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.25 -7.91 -40.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260749802.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.795 kcal (2) G-P(sol) polarization free energy of solvation -32.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds