Wall clock time and date at job start Mon Mar 30 2020 03:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36824 * 125.06514 * 2 1 4 4 C 1.34236 * 109.93935 * 179.97438 * 3 2 1 5 5 C 1.46493 * 106.99702 * 359.97438 * 4 3 2 6 6 C 1.37692 * 125.05901 * 179.97438 * 2 1 3 7 7 C 1.39085 * 133.51567 * 0.02562 * 6 2 1 8 8 C 1.37793 * 119.77920 * 179.97438 * 7 6 2 9 9 C 1.38788 * 120.66312 * 359.97438 * 8 7 6 10 10 C 1.36656 * 120.53190 * 0.02562 * 9 8 7 11 11 C 1.50705 * 120.12212 * 180.02562 * 10 9 8 12 12 H 1.09001 * 109.46718 * 144.97848 * 11 10 9 13 13 N 1.46906 * 109.46667 * 24.98196 * 11 10 9 14 14 C 1.50694 * 109.47515 * 264.98038 * 11 10 9 15 15 H 1.08006 * 119.99908 * 359.97438 * 14 11 10 16 16 C 1.37871 * 120.00207 * 179.97438 * 14 11 10 17 17 N 1.31519 * 119.99905 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00261 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47050 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47422 * 119.99976 * 18 16 14 21 21 H 1.48505 * 109.46885 * 239.99988 * 18 16 14 22 22 H 1.08994 * 109.47097 * 270.00936 * 1 2 3 23 23 H 1.09006 * 109.46314 * 30.00515 * 1 2 3 24 24 H 1.09001 * 109.47243 * 150.00148 * 1 2 3 25 25 H 1.07999 * 125.03296 * 359.97438 * 3 2 1 26 26 H 1.07999 * 126.49922 * 179.97438 * 4 3 2 27 27 H 1.08001 * 120.11475 * 359.71579 * 7 6 2 28 28 H 1.07995 * 119.66646 * 180.02562 * 8 7 6 29 29 H 1.08004 * 119.73718 * 179.97438 * 9 8 7 30 30 H 1.00895 * 110.99961 * 300.00257 * 13 11 10 31 31 H 1.00903 * 110.99865 * 63.95248 * 13 11 10 32 32 H 0.96995 * 120.00005 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2511 1.1199 0.0000 4 6 3.5470 0.7696 0.0006 5 6 3.5948 -0.6945 0.0016 6 6 2.2560 -1.1271 0.0005 7 6 1.9805 -2.4904 0.0007 8 6 3.0172 -3.3981 0.0007 9 6 4.3362 -2.9662 0.0000 10 6 4.6296 -1.6315 -0.0002 11 6 6.0651 -1.1727 -0.0015 12 1 6.1544 -0.2604 -0.5913 13 7 6.9131 -2.2196 -0.5873 14 6 6.5072 -0.9015 1.4134 15 1 5.8175 -1.0464 2.2318 16 6 7.7920 -0.4684 1.6632 17 7 8.6318 -0.2915 0.6666 18 14 8.3403 -0.1329 3.4172 19 1 7.2159 -0.4060 4.3480 20 1 9.4876 -1.0133 3.7542 21 1 8.7529 1.2881 3.5435 22 1 -0.3633 0.0002 1.0276 23 1 -0.3632 0.8900 -0.5140 24 1 -0.3634 -0.8900 -0.5138 25 1 1.8835 2.1354 -0.0004 26 1 4.3937 1.4401 0.0003 27 1 0.9575 -2.8365 0.0050 28 1 2.8012 -4.4562 0.0004 29 1 5.1371 -3.6907 0.0004 30 1 6.8476 -3.0761 -0.0582 31 1 6.6788 -2.3744 -1.5565 32 1 9.5358 0.0128 0.8423 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260749802.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:02 Heat of formation + Delta-G solvation = 47.453522 kcal Electronic energy + Delta-G solvation = -15598.144610 eV Core-core repulsion = 13137.371578 eV Total energy + Delta-G solvation = -2460.773032 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.07823 -38.54237 -35.97346 -33.78032 -33.26653 -30.32772 -29.82498 -27.92557 -26.90246 -24.45539 -22.58759 -22.25215 -20.19374 -18.47789 -17.86244 -17.08450 -16.50829 -16.26548 -16.11776 -15.97134 -14.84646 -14.73774 -14.20647 -13.98792 -13.70662 -13.54279 -13.20668 -13.02147 -12.78823 -12.75589 -12.23516 -12.13318 -12.05435 -11.42171 -11.26909 -10.56126 -10.18358 -8.99072 -8.90934 -8.34188 -7.94285 -6.17055 0.37857 0.82973 1.40332 1.41746 1.53454 1.91453 2.05896 2.46974 3.13626 3.26313 3.93619 4.01950 4.13799 4.27259 4.34961 4.47482 4.51821 4.69406 4.70700 4.75266 4.93147 5.04058 5.16384 5.31806 5.42070 5.66697 5.75577 5.89652 5.95779 6.03125 6.24999 6.44514 6.59666 6.70310 7.12401 7.28295 7.54141 9.07459 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029609 B = 0.008261 C = 0.007315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.439893 B = 3388.775654 C = 3826.815760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.492 5.492 3 C 0.056 3.944 4 C -0.230 4.230 5 C -0.139 4.139 6 C 0.079 3.921 7 C -0.150 4.150 8 C -0.096 4.096 9 C -0.179 4.179 10 C -0.056 4.056 11 C 0.264 3.736 12 H 0.006 0.994 13 N -0.819 5.819 14 C -0.531 4.531 15 H 0.036 0.964 16 C 0.035 3.965 17 N -0.882 5.882 18 Si 0.947 3.053 19 H -0.275 1.275 20 H -0.278 1.278 21 H -0.278 1.278 22 H 0.076 0.924 23 H 0.106 0.894 24 H 0.088 0.912 25 H 0.207 0.793 26 H 0.125 0.875 27 H 0.146 0.854 28 H 0.151 0.849 29 H 0.116 0.884 30 H 0.324 0.676 31 H 0.310 0.690 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.367 -0.989 -1.833 17.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.176 5.176 3 C -0.069 4.069 4 C -0.255 4.255 5 C -0.144 4.144 6 C -0.027 4.027 7 C -0.170 4.170 8 C -0.115 4.115 9 C -0.198 4.198 10 C -0.059 4.059 11 C 0.154 3.846 12 H 0.023 0.977 13 N -0.347 5.347 14 C -0.570 4.570 15 H 0.054 0.946 16 C -0.168 4.168 17 N -0.518 5.518 18 Si 0.773 3.227 19 H -0.199 1.199 20 H -0.204 1.204 21 H -0.204 1.204 22 H 0.094 0.906 23 H 0.124 0.876 24 H 0.107 0.893 25 H 0.223 0.777 26 H 0.143 0.857 27 H 0.164 0.836 28 H 0.169 0.831 29 H 0.134 0.866 30 H 0.137 0.863 31 H 0.121 0.879 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.927 -0.398 -1.733 17.020 hybrid contribution 0.060 -0.156 0.721 0.741 sum -16.867 -0.554 -1.012 16.906 Atomic orbital electron populations 1.22196 0.74620 1.05688 1.03908 1.44042 1.07177 1.03289 1.63084 1.22177 0.89260 0.92416 1.03068 1.21826 0.97067 0.93255 1.13368 1.19436 0.92762 0.94405 1.07794 1.18548 0.89810 0.89651 1.04682 1.20164 1.00313 0.88362 1.08204 1.21042 0.91209 1.00097 0.99118 1.20587 0.97522 0.94589 1.07130 1.20740 0.97435 0.93495 0.94190 1.17702 0.82689 0.90110 0.94088 0.97664 1.59014 1.60772 1.11093 1.03791 1.21005 0.97202 1.47000 0.91798 0.94589 1.25658 0.96674 0.94493 0.99987 1.70242 1.05254 1.44438 1.31850 0.85703 0.78046 0.77829 0.81116 1.19938 1.20359 1.20394 0.90566 0.87560 0.89282 0.77651 0.85665 0.83620 0.83128 0.86588 0.86292 0.87872 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 11.03 127.77 1.41 2.60 16 2 N -0.49 -13.87 3.18 -539.27 -1.71 -15.58 16 3 C 0.06 1.65 11.29 83.00 0.94 2.58 16 4 C -0.23 -9.33 10.87 23.51 0.26 -9.08 16 5 C -0.14 -6.14 6.15 -20.20 -0.12 -6.26 16 6 C 0.08 2.84 6.81 39.03 0.27 3.10 16 7 C -0.15 -4.63 9.97 22.37 0.22 -4.40 16 8 C -0.10 -3.10 10.01 22.30 0.22 -2.88 16 9 C -0.18 -7.21 9.22 22.03 0.20 -7.01 16 10 C -0.06 -2.63 4.98 -19.91 -0.10 -2.73 16 11 C 0.26 14.36 2.77 43.42 0.12 14.48 16 12 H 0.01 0.34 8.04 -2.39 -0.02 0.32 16 13 N -0.82 -41.37 8.13 -174.94 -1.42 -42.79 16 14 C -0.53 -31.43 8.71 25.60 0.22 -31.21 16 15 H 0.04 2.19 7.74 -2.91 -0.02 2.17 16 16 C 0.03 2.05 5.39 84.65 0.46 2.50 16 17 N -0.88 -53.92 12.77 21.45 0.27 -53.64 16 18 Si 0.95 45.99 29.54 68.60 2.03 48.01 16 19 H -0.27 -13.19 7.11 99.48 0.71 -12.49 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 22 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 24 H 0.09 1.19 8.10 -2.39 -0.02 1.17 16 25 H 0.21 4.00 8.06 -2.91 -0.02 3.98 16 26 H 0.13 5.42 8.06 -2.91 -0.02 5.39 16 27 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 28 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 29 H 0.12 4.49 6.25 -2.91 -0.02 4.47 16 30 H 0.32 15.43 7.20 -89.70 -0.65 14.78 16 31 H 0.31 14.13 9.06 -89.69 -0.81 13.32 16 32 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -73.90 275.33 2.94 -70.97 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: -0.32 Total: 31.33 kcal Atomic # 6 Polarization: -42.38 SS G_CDS: 4.09 Total: -38.29 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -2.86 Total: -112.02 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -73.90 2.94 -70.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260749802.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.420 kcal (2) G-P(sol) polarization free energy of solvation -73.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds