Wall clock time and date at job start Mon Mar 30 2020 03:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36839 * 125.06359 * 2 1 4 4 C 1.34230 * 109.94018 * 179.97438 * 3 2 1 5 5 C 1.46496 * 106.99983 * 359.97438 * 4 3 2 6 6 C 1.37693 * 125.06616 * 179.97438 * 2 1 3 7 7 C 1.39088 * 133.51175 * 0.05053 * 6 2 1 8 8 C 1.37785 * 119.77727 * 179.97438 * 7 6 2 9 9 C 1.38784 * 120.66924 * 0.02562 * 8 7 6 10 10 C 1.36661 * 120.52641 * 0.26629 * 9 8 7 11 11 C 1.50705 * 120.11995 * 179.70694 * 10 9 8 12 12 H 1.08999 * 109.46611 * 219.76841 * 11 10 9 13 13 N 1.46900 * 109.46947 * 339.76701 * 11 10 9 14 14 C 1.50695 * 109.47251 * 99.77080 * 11 10 9 15 15 H 1.08001 * 120.00614 * 359.97438 * 14 11 10 16 16 C 1.37881 * 120.00039 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99629 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 120.00064 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.46959 * 60.00257 * 18 16 14 20 20 H 1.48503 * 109.47032 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47096 * 300.00145 * 18 16 14 22 22 H 1.09002 * 109.46986 * 90.02888 * 1 2 3 23 23 H 1.09001 * 109.47522 * 210.02635 * 1 2 3 24 24 H 1.09001 * 109.47603 * 330.02873 * 1 2 3 25 25 H 1.08001 * 125.02906 * 359.97400 * 3 2 1 26 26 H 1.08001 * 126.50579 * 179.97438 * 4 3 2 27 27 H 1.08003 * 120.10811 * 359.95572 * 7 6 2 28 28 H 1.08005 * 119.66410 * 180.02562 * 8 7 6 29 29 H 1.07998 * 119.74076 * 179.97438 * 9 8 7 30 30 H 1.00899 * 110.99997 * 296.04604 * 13 11 10 31 31 H 1.00899 * 111.00058 * 60.00118 * 13 11 10 32 32 H 0.97001 * 119.99420 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2510 1.1200 0.0000 4 6 3.5469 0.7698 0.0006 5 6 3.5948 -0.6943 0.0016 6 6 2.2560 -1.1270 0.0005 7 6 1.9806 -2.4903 0.0002 8 6 3.0173 -3.3979 0.0004 9 6 4.3362 -2.9660 0.0014 10 6 4.6296 -1.6313 0.0076 11 6 6.0651 -1.1725 0.0153 12 1 6.1678 -0.3120 0.6764 13 7 6.9251 -2.2631 0.4937 14 6 6.4759 -0.7846 -1.3817 15 1 5.7686 -0.8628 -2.1941 16 6 7.7550 -0.3297 -1.6229 17 7 8.6163 -0.2340 -0.6336 18 14 8.2645 0.1505 -3.3547 19 1 7.3947 1.2523 -3.8389 20 1 9.6790 0.6027 -3.3470 21 1 8.1252 -1.0224 -4.2548 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3634 -0.8897 0.5142 24 1 -0.3634 0.8902 0.5134 25 1 1.8833 2.1355 -0.0004 26 1 4.3936 1.4403 0.0003 27 1 0.9575 -2.8364 0.0002 28 1 2.8013 -4.4561 -0.0003 29 1 5.1372 -3.6904 0.0019 30 1 6.7121 -2.4979 1.4516 31 1 6.8475 -3.0730 -0.1029 32 1 9.5162 0.0857 -0.8033 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260749812.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:04 Heat of formation + Delta-G solvation = 69.221057 kcal Electronic energy + Delta-G solvation = -15608.674071 eV Core-core repulsion = 13148.844951 eV Total energy + Delta-G solvation = -2459.829121 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.72420 -37.03085 -34.18490 -32.28824 -31.45053 -28.81009 -28.37992 -26.05345 -25.58623 -22.71599 -21.11511 -20.73449 -18.73003 -16.52537 -16.34769 -15.66303 -14.99202 -14.88507 -14.44335 -14.12629 -13.36618 -13.26160 -12.66128 -12.55108 -12.27270 -12.16070 -11.91399 -11.40172 -10.98626 -10.82838 -10.69056 -10.49055 -10.39216 -9.62186 -9.28311 -8.63596 -8.31985 -7.58165 -7.03994 -6.87561 -5.78143 -3.91926 1.80288 2.30020 3.22062 3.29223 3.41115 3.45141 3.48771 4.50831 4.68759 4.87824 5.17314 5.23258 5.35202 5.41783 5.46196 5.59964 5.75638 6.05233 6.13360 6.29257 6.40471 6.45977 6.67794 6.80648 7.11096 7.21681 7.40147 7.43224 7.69212 7.79745 7.86752 8.00738 8.32358 8.74868 9.11103 9.24984 9.75319 11.25955 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029150 B = 0.008417 C = 0.007330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.314356 B = 3325.738097 C = 3819.113716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.497 5.497 3 C 0.015 3.985 4 C -0.166 4.166 5 C -0.102 4.102 6 C 0.095 3.905 7 C -0.166 4.166 8 C -0.090 4.090 9 C -0.177 4.177 10 C -0.014 4.014 11 C 0.254 3.746 12 H 0.050 0.950 13 N -0.811 5.811 14 C -0.521 4.521 15 H 0.052 0.948 16 C 0.083 3.917 17 N -0.849 5.849 18 Si 0.883 3.117 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.279 1.279 22 H 0.060 0.940 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.160 0.840 26 H 0.149 0.851 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.298 0.702 31 H 0.318 0.682 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.173 -0.722 2.339 14.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.184 5.184 3 C -0.107 4.107 4 C -0.191 4.191 5 C -0.107 4.107 6 C -0.010 4.010 7 C -0.187 4.187 8 C -0.109 4.109 9 C -0.196 4.196 10 C -0.017 4.017 11 C 0.145 3.855 12 H 0.067 0.933 13 N -0.338 5.338 14 C -0.560 4.560 15 H 0.070 0.930 16 C -0.123 4.123 17 N -0.484 5.484 18 Si 0.711 3.289 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.204 1.204 22 H 0.079 0.921 23 H 0.092 0.908 24 H 0.094 0.906 25 H 0.177 0.823 26 H 0.166 0.834 27 H 0.123 0.877 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.109 0.891 31 H 0.131 0.869 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.689 -0.110 2.271 13.876 hybrid contribution -0.781 -0.259 -0.982 1.281 sum -14.470 -0.369 1.290 14.532 Atomic orbital electron populations 1.21759 0.78398 1.03314 1.02169 1.43659 1.05055 1.04520 1.65117 1.21622 0.90632 0.90505 1.07960 1.21841 0.95488 0.93728 1.08053 1.19065 0.91180 0.93542 1.06956 1.18316 0.90454 0.88037 1.04243 1.19685 0.98437 0.89312 1.11269 1.20670 0.92556 0.97951 0.99721 1.20449 0.95769 0.95711 1.07711 1.21039 0.99045 0.91785 0.89874 1.18150 0.79861 0.90677 0.96855 0.93267 1.59188 1.60379 1.11157 1.03046 1.20724 0.97243 1.45678 0.92328 0.93012 1.24929 0.96548 0.94783 0.96032 1.70100 1.04536 1.43480 1.30316 0.86842 0.77374 0.78885 0.85829 1.20409 1.21406 1.20439 0.92104 0.90787 0.90582 0.82287 0.83355 0.87709 0.86912 0.86653 0.89139 0.86897 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.90 11.03 59.84 0.66 1.56 16 2 N -0.50 -7.84 3.18 -121.81 -0.39 -8.23 16 3 C 0.02 0.24 11.29 -16.73 -0.19 0.05 16 4 C -0.17 -3.26 10.94 -37.67 -0.41 -3.67 16 5 C -0.10 -2.20 6.15 -105.14 -0.65 -2.85 16 6 C 0.09 1.78 6.81 -83.99 -0.57 1.21 16 7 C -0.17 -2.84 9.97 -39.43 -0.39 -3.23 16 8 C -0.09 -1.56 10.01 -39.55 -0.40 -1.95 16 9 C -0.18 -3.53 9.20 -39.95 -0.37 -3.90 16 10 C -0.01 -0.33 5.01 -104.69 -0.52 -0.85 16 11 C 0.25 6.49 2.76 -70.02 -0.19 6.29 16 12 H 0.05 1.38 8.14 -51.93 -0.42 0.96 16 13 N -0.81 -19.49 8.02 -6.65 -0.05 -19.54 16 14 C -0.52 -14.64 8.71 -34.44 -0.30 -14.94 16 15 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 16 C 0.08 2.36 5.39 -17.82 -0.10 2.26 16 17 N -0.85 -25.03 12.77 55.43 0.71 -24.32 16 18 Si 0.88 21.79 29.54 -169.99 -5.02 16.77 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 24 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 26 H 0.15 2.94 8.06 -52.49 -0.42 2.51 16 27 H 0.10 1.47 8.06 -52.48 -0.42 1.05 16 28 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 29 H 0.12 2.18 6.20 -52.49 -0.33 1.85 16 30 H 0.30 6.43 9.06 -39.29 -0.36 6.08 16 31 H 0.32 7.29 7.28 -39.29 -0.29 7.00 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 275.42 15.07 4.15 4.15 Total: -1.00 -32.09 275.42 -7.92 -40.01 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -3.89 Total: 11.17 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -3.43 Total: -20.01 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.27 Total: -52.09 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.09 -7.92 -40.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260749812.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.231 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds