Wall clock time and date at job start Mon Mar 30 2020 03:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36839 * 125.06359 * 2 1 4 4 C 1.34230 * 109.94018 * 179.97438 * 3 2 1 5 5 C 1.46496 * 106.99983 * 359.97438 * 4 3 2 6 6 C 1.37693 * 125.06616 * 179.97438 * 2 1 3 7 7 C 1.39088 * 133.51175 * 0.05053 * 6 2 1 8 8 C 1.37785 * 119.77727 * 179.97438 * 7 6 2 9 9 C 1.38784 * 120.66924 * 0.02562 * 8 7 6 10 10 C 1.36661 * 120.52641 * 0.26629 * 9 8 7 11 11 C 1.50705 * 120.11995 * 179.70694 * 10 9 8 12 12 H 1.08999 * 109.46611 * 219.76841 * 11 10 9 13 13 N 1.46900 * 109.46947 * 339.76701 * 11 10 9 14 14 C 1.50695 * 109.47251 * 99.77080 * 11 10 9 15 15 H 1.08001 * 120.00614 * 359.97438 * 14 11 10 16 16 C 1.37881 * 120.00039 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99629 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 120.00064 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.46959 * 60.00257 * 18 16 14 20 20 H 1.48503 * 109.47032 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47096 * 300.00145 * 18 16 14 22 22 H 1.09002 * 109.46986 * 90.02888 * 1 2 3 23 23 H 1.09001 * 109.47522 * 210.02635 * 1 2 3 24 24 H 1.09001 * 109.47603 * 330.02873 * 1 2 3 25 25 H 1.08001 * 125.02906 * 359.97400 * 3 2 1 26 26 H 1.08001 * 126.50579 * 179.97438 * 4 3 2 27 27 H 1.08003 * 120.10811 * 359.95572 * 7 6 2 28 28 H 1.08005 * 119.66410 * 180.02562 * 8 7 6 29 29 H 1.07998 * 119.74076 * 179.97438 * 9 8 7 30 30 H 1.00899 * 110.99997 * 296.04604 * 13 11 10 31 31 H 1.00899 * 111.00058 * 60.00118 * 13 11 10 32 32 H 0.97001 * 119.99420 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2510 1.1200 0.0000 4 6 3.5469 0.7698 0.0006 5 6 3.5948 -0.6943 0.0016 6 6 2.2560 -1.1270 0.0005 7 6 1.9806 -2.4903 0.0002 8 6 3.0173 -3.3979 0.0004 9 6 4.3362 -2.9660 0.0014 10 6 4.6296 -1.6313 0.0076 11 6 6.0651 -1.1725 0.0153 12 1 6.1678 -0.3120 0.6764 13 7 6.9251 -2.2631 0.4937 14 6 6.4759 -0.7846 -1.3817 15 1 5.7686 -0.8628 -2.1941 16 6 7.7550 -0.3297 -1.6229 17 7 8.6163 -0.2340 -0.6336 18 14 8.2645 0.1505 -3.3547 19 1 7.3947 1.2523 -3.8389 20 1 9.6790 0.6027 -3.3470 21 1 8.1252 -1.0224 -4.2548 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3634 -0.8897 0.5142 24 1 -0.3634 0.8902 0.5134 25 1 1.8833 2.1355 -0.0004 26 1 4.3936 1.4403 0.0003 27 1 0.9575 -2.8364 0.0002 28 1 2.8013 -4.4561 -0.0003 29 1 5.1372 -3.6904 0.0019 30 1 6.7121 -2.4979 1.4516 31 1 6.8475 -3.0730 -0.1029 32 1 9.5162 0.0857 -0.8033 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260749812.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:04 Heat of formation + Delta-G solvation = 48.205719 kcal Electronic energy + Delta-G solvation = -15609.585365 eV Core-core repulsion = 13148.844951 eV Total energy + Delta-G solvation = -2460.740414 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.07377 -38.54634 -35.97105 -33.76943 -33.27706 -30.30896 -29.83507 -27.93273 -26.87913 -24.45774 -22.57825 -22.23403 -20.18845 -18.47823 -17.85518 -17.06767 -16.51441 -16.26324 -16.12237 -15.97319 -14.84905 -14.74484 -14.17334 -13.98172 -13.72514 -13.53207 -13.20323 -13.01957 -12.78768 -12.74243 -12.22632 -12.13517 -12.05588 -11.40604 -11.29253 -10.55290 -10.17349 -8.98488 -8.90434 -8.34347 -7.93502 -6.16202 0.38148 0.83231 1.41737 1.43260 1.51025 1.92047 2.06264 2.47410 3.14010 3.26929 3.93915 4.02256 4.14147 4.27405 4.35265 4.46824 4.51833 4.69573 4.71425 4.75385 4.93530 5.04467 5.17316 5.32565 5.42458 5.66932 5.75744 5.89449 5.96071 6.02255 6.25814 6.44873 6.60069 6.70986 7.12277 7.28573 7.54680 9.07855 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029150 B = 0.008417 C = 0.007330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.314356 B = 3325.738097 C = 3819.113716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.492 5.492 3 C 0.054 3.946 4 C -0.228 4.228 5 C -0.137 4.137 6 C 0.079 3.921 7 C -0.150 4.150 8 C -0.095 4.095 9 C -0.181 4.181 10 C -0.056 4.056 11 C 0.265 3.735 12 H 0.005 0.995 13 N -0.820 5.820 14 C -0.531 4.531 15 H 0.036 0.964 16 C 0.035 3.965 17 N -0.881 5.881 18 Si 0.946 3.054 19 H -0.274 1.274 20 H -0.281 1.281 21 H -0.275 1.275 22 H 0.076 0.924 23 H 0.088 0.912 24 H 0.106 0.894 25 H 0.206 0.794 26 H 0.125 0.875 27 H 0.146 0.854 28 H 0.151 0.849 29 H 0.117 0.883 30 H 0.311 0.689 31 H 0.324 0.676 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.316 -1.147 1.700 17.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.176 5.176 3 C -0.071 4.071 4 C -0.253 4.253 5 C -0.143 4.143 6 C -0.027 4.027 7 C -0.171 4.171 8 C -0.114 4.114 9 C -0.200 4.200 10 C -0.059 4.059 11 C 0.155 3.845 12 H 0.023 0.977 13 N -0.347 5.347 14 C -0.570 4.570 15 H 0.054 0.946 16 C -0.168 4.168 17 N -0.518 5.518 18 Si 0.772 3.228 19 H -0.200 1.200 20 H -0.206 1.206 21 H -0.200 1.200 22 H 0.094 0.906 23 H 0.107 0.893 24 H 0.124 0.876 25 H 0.223 0.777 26 H 0.143 0.857 27 H 0.164 0.836 28 H 0.169 0.831 29 H 0.135 0.865 30 H 0.122 0.878 31 H 0.137 0.863 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.872 -0.547 1.632 16.960 hybrid contribution 0.034 -0.099 -0.735 0.742 sum -16.839 -0.645 0.897 16.875 Atomic orbital electron populations 1.22189 0.74639 1.05674 1.03898 1.44037 1.07161 1.03287 1.63117 1.22174 0.89282 0.92403 1.03203 1.21822 0.97006 0.93304 1.13169 1.19414 0.92722 0.94377 1.07747 1.18555 0.89817 0.89649 1.04686 1.20164 1.00318 0.88355 1.08225 1.21038 0.91208 1.00089 0.99104 1.20607 0.97577 0.94580 1.07266 1.20753 0.97462 0.93482 0.94177 1.17684 0.82594 0.89702 0.94544 0.97713 1.58994 1.60717 1.11072 1.03939 1.20932 0.97118 1.45661 0.93287 0.94578 1.25655 0.96541 0.94773 0.99829 1.70228 1.04738 1.44543 1.32250 0.85834 0.77177 0.78598 0.81197 1.19979 1.20623 1.19990 0.90574 0.89281 0.87588 0.77711 0.85732 0.83634 0.83120 0.86490 0.87812 0.86280 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 11.03 127.77 1.41 2.61 16 2 N -0.49 -13.94 3.18 -539.29 -1.71 -15.65 16 3 C 0.05 1.62 11.29 83.00 0.94 2.56 16 4 C -0.23 -9.31 10.94 23.51 0.26 -9.06 16 5 C -0.14 -6.08 6.15 -20.20 -0.12 -6.21 16 6 C 0.08 2.84 6.81 39.03 0.27 3.10 16 7 C -0.15 -4.63 9.97 22.37 0.22 -4.41 16 8 C -0.10 -3.08 10.01 22.29 0.22 -2.86 16 9 C -0.18 -7.26 9.20 22.03 0.20 -7.06 16 10 C -0.06 -2.63 5.01 -19.91 -0.10 -2.73 16 11 C 0.26 14.38 2.76 43.42 0.12 14.50 16 12 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 13 N -0.82 -41.30 8.02 -174.96 -1.40 -42.70 16 14 C -0.53 -31.35 8.71 25.60 0.22 -31.13 16 15 H 0.04 2.18 7.74 -2.91 -0.02 2.16 16 16 C 0.04 2.06 5.39 84.66 0.46 2.52 16 17 N -0.88 -53.90 12.77 21.45 0.27 -53.63 16 18 Si 0.95 45.92 29.54 68.60 2.03 47.94 16 19 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 21 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 22 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.09 1.19 8.10 -2.39 -0.02 1.18 16 24 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.21 4.06 8.06 -2.91 -0.02 4.03 16 26 H 0.12 5.46 8.06 -2.91 -0.02 5.43 16 27 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 28 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 29 H 0.12 4.48 6.20 -2.91 -0.02 4.46 16 30 H 0.31 14.08 9.06 -89.69 -0.81 13.27 16 31 H 0.32 15.43 7.28 -89.69 -0.65 14.77 16 32 H 0.26 14.88 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -73.60 275.42 2.95 -70.65 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: -0.33 Total: 31.55 kcal Atomic # 6 Polarization: -42.24 SS G_CDS: 4.09 Total: -38.15 kcal Atomic # 7 Polarization: -109.14 SS G_CDS: -2.84 Total: -111.99 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -73.60 2.95 -70.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260749812.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.856 kcal (2) G-P(sol) polarization free energy of solvation -73.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds