Wall clock time and date at job start Mon Mar 30 2020 02:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47399 * 2 1 4 4 C 1.50704 * 109.47153 * 120.00227 * 2 1 3 5 5 N 1.34235 * 126.13008 * 300.88745 * 4 2 1 6 6 H 0.97001 * 125.06517 * 359.32558 * 5 4 2 7 7 N 1.39970 * 109.86682 * 179.88887 * 5 4 2 8 8 C 1.31227 * 109.10104 * 359.43852 * 7 5 4 9 9 C 1.38516 * 126.13758 * 119.99471 * 4 2 1 10 10 C 1.40872 * 134.75274 * 359.97438 * 9 4 2 11 11 C 1.37527 * 120.65724 * 180.02562 * 10 9 4 12 12 C 1.38126 * 122.51204 * 0.02562 * 11 10 9 13 13 C 1.40405 * 121.20725 * 0.02562 * 12 11 10 14 14 C 1.40210 * 120.74590 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99886 * 154.66736 * 14 13 12 16 16 C 1.40006 * 119.99867 * 334.66514 * 14 13 12 17 17 N 1.30833 * 120.00044 * 334.59314 * 16 14 13 18 18 Si 1.86799 * 120.00110 * 154.59280 * 16 14 13 19 19 H 1.48497 * 109.47325 * 180.02562 * 18 16 14 20 20 H 1.48502 * 109.46900 * 300.00120 * 18 16 14 21 21 H 1.48493 * 109.47280 * 59.99965 * 18 16 14 22 22 H 1.09005 * 109.46798 * 300.00274 * 1 2 3 23 23 H 1.09005 * 109.47204 * 59.99678 * 1 2 3 24 24 H 1.08993 * 109.47334 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46798 * 239.99726 * 2 1 3 26 26 H 1.08993 * 109.46951 * 59.99922 * 3 2 1 27 27 H 1.08998 * 109.47132 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46996 * 299.99673 * 3 2 1 29 29 H 1.07997 * 119.66827 * 0.02562 * 10 9 4 30 30 H 1.08003 * 118.73759 * 179.97438 * 11 10 9 31 31 H 1.08002 * 119.40090 * 179.97438 * 12 11 10 32 32 H 0.97002 * 120.00301 * 354.18481 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7715 -0.3706 2.5026 6 1 1.2304 0.3861 2.7775 7 7 2.4070 -1.2634 3.3734 8 6 3.0519 -2.1639 2.6697 9 6 2.8319 -1.8414 1.2515 10 6 3.4128 -2.6638 0.2663 11 6 4.1795 -3.7489 0.6215 12 6 4.4195 -4.0892 1.9385 13 6 3.8846 -3.3337 2.9942 14 6 4.1340 -3.6881 4.3276 15 1 4.0927 -2.9372 5.1027 16 6 4.4366 -5.0155 4.6542 17 7 4.0225 -5.9892 3.8847 18 14 5.4317 -5.3964 6.1885 19 1 5.6147 -6.8652 6.3079 20 1 6.7597 -4.7387 6.0931 21 1 4.7123 -4.8879 7.3839 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.6768 1.9562 0.8899 27 1 3.1301 1.4424 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 3.2545 -2.4400 -0.7783 30 1 4.6097 -4.3587 -0.1593 31 1 5.0291 -4.9526 2.1604 32 1 3.4358 -5.7997 3.1358 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260776674.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:57 Heat of formation + Delta-G solvation = 57.051658 kcal Electronic energy + Delta-G solvation = -15488.201499 eV Core-core repulsion = 13027.844674 eV Total energy + Delta-G solvation = -2460.356825 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.13577 -36.27720 -34.91340 -33.60153 -30.26172 -29.17187 -27.69631 -27.08258 -24.98549 -22.93230 -21.36869 -20.37774 -19.08979 -17.12804 -16.57875 -15.56768 -14.87884 -14.23516 -14.06577 -13.94463 -13.58906 -12.97080 -12.77534 -12.65297 -12.18616 -11.92092 -11.38726 -11.09307 -11.02073 -10.91977 -10.61305 -10.47796 -10.26558 -10.04248 -9.98803 -9.29280 -8.98469 -8.77406 -7.59515 -7.40798 -6.63941 -4.29033 1.91226 3.04964 3.12649 3.28001 3.33413 3.59452 3.64813 3.92746 4.53423 4.93980 5.04123 5.28008 5.46247 5.56311 5.62346 5.64038 5.82749 5.90315 6.02962 6.22628 6.29080 6.33823 6.50169 6.72060 6.88007 7.15613 7.34977 7.45274 7.68026 7.78703 8.03028 8.07868 8.22190 8.34511 8.49913 8.71063 8.93688 9.86869 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043456 B = 0.007062 C = 0.006464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.172315 B = 3963.779696 C = 4330.661042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.017 4.017 3 C -0.144 4.144 4 C 0.015 3.985 5 N -0.460 5.460 6 H 0.424 0.576 7 N -0.294 5.294 8 C 0.078 3.922 9 C -0.118 4.118 10 C -0.262 4.262 11 C -0.036 4.036 12 C -0.316 4.316 13 C 0.131 3.869 14 C -0.458 4.458 15 H 0.084 0.916 16 C 0.032 3.968 17 N -0.766 5.766 18 Si 1.069 2.931 19 H -0.271 1.271 20 H -0.271 1.271 21 H -0.273 1.273 22 H 0.048 0.952 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.090 0.910 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.344 7.531 -3.866 9.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.037 4.037 3 C -0.202 4.202 4 C -0.114 4.114 5 N -0.166 5.166 6 H 0.265 0.735 7 N -0.119 5.119 8 C -0.081 4.081 9 C -0.128 4.128 10 C -0.283 4.283 11 C -0.056 4.056 12 C -0.338 4.338 13 C 0.125 3.875 14 C -0.486 4.486 15 H 0.102 0.898 16 C -0.193 4.193 17 N -0.388 5.388 18 Si 0.891 3.109 19 H -0.195 1.195 20 H -0.196 1.196 21 H -0.199 1.199 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.108 0.892 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.963 6.610 -1.885 7.485 hybrid contribution -0.903 1.451 -1.651 2.376 sum -3.866 8.061 -3.536 9.614 Atomic orbital electron populations 1.21855 0.94929 1.02185 1.01225 1.19563 0.94958 0.94947 0.94262 1.21853 1.01721 0.95379 1.01213 1.20481 1.04843 0.99734 0.86369 1.45774 1.42134 1.25322 1.03380 0.73497 1.77010 1.16035 1.04574 1.14276 1.22551 0.97870 0.96345 0.91360 1.19125 1.02893 0.96548 0.94207 1.19289 1.12565 1.01576 0.94884 1.20112 0.95491 0.94601 0.95388 1.20282 1.13962 1.08391 0.91210 1.17685 0.88678 0.87464 0.93661 1.20669 1.36618 0.97101 0.94209 0.89756 1.27256 0.96395 0.91965 1.03697 1.70393 1.18981 1.35959 1.13441 0.83586 0.76621 0.77372 0.73340 1.19536 1.19641 1.19859 0.93268 0.92358 0.92220 0.89218 0.93261 0.92229 0.92392 0.89723 0.89825 0.87728 0.87725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.18 37.16 0.34 -1.45 16 2 C -0.02 -0.25 3.34 -91.77 -0.31 -0.55 16 3 C -0.14 -1.77 9.18 37.16 0.34 -1.43 16 4 C 0.01 0.29 5.81 -81.44 -0.47 -0.18 16 5 N -0.46 -9.02 7.20 33.94 0.24 -8.77 16 6 H 0.42 6.54 8.96 -182.69 -1.64 4.90 16 7 N -0.29 -7.19 12.66 34.42 0.44 -6.76 16 8 C 0.08 2.07 7.46 -80.89 -0.60 1.47 16 9 C -0.12 -2.84 6.26 -105.21 -0.66 -3.50 16 10 C -0.26 -6.18 10.01 -38.84 -0.39 -6.57 16 11 C -0.04 -0.88 9.87 -39.88 -0.39 -1.27 16 12 C -0.32 -8.35 7.92 -38.81 -0.31 -8.66 16 13 C 0.13 3.61 5.46 -104.70 -0.57 3.03 16 14 C -0.46 -12.30 9.00 -38.18 -0.34 -12.64 16 15 H 0.08 2.24 7.96 -52.49 -0.42 1.82 16 16 C 0.03 0.80 4.94 -17.31 -0.09 0.71 16 17 N -0.77 -19.99 12.31 55.55 0.68 -19.31 16 18 Si 1.07 21.06 30.00 -169.99 -5.10 15.96 16 19 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 20 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 21 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.09 1.34 7.89 -51.93 -0.41 0.93 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.77 7.91 -52.49 -0.42 1.36 16 30 H 0.08 1.80 8.06 -52.48 -0.42 1.37 16 31 H 0.10 2.80 6.44 -52.49 -0.34 2.47 16 32 H 0.31 8.34 6.68 -40.82 -0.27 8.06 16 LS Contribution 274.65 15.07 4.14 4.14 Total: -1.00 -29.54 274.65 -8.29 -37.83 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.25 Total: 7.95 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: -3.45 Total: -31.04 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 1.36 Total: -34.83 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.10 Total: 15.96 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.54 -8.29 -37.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260776674.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.881 kcal (2) G-P(sol) polarization free energy of solvation -29.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds