Wall clock time and date at job start Mon Mar 30 2020 02:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47399 * 2 1 4 4 C 1.50704 * 109.47153 * 120.00227 * 2 1 3 5 5 N 1.34235 * 126.13008 * 300.88745 * 4 2 1 6 6 H 0.97001 * 125.06517 * 359.32558 * 5 4 2 7 7 N 1.39970 * 109.86682 * 179.88887 * 5 4 2 8 8 C 1.31227 * 109.10104 * 359.43852 * 7 5 4 9 9 C 1.38516 * 126.13758 * 119.99471 * 4 2 1 10 10 C 1.40872 * 134.75274 * 359.97438 * 9 4 2 11 11 C 1.37527 * 120.65724 * 180.02562 * 10 9 4 12 12 C 1.38126 * 122.51204 * 0.02562 * 11 10 9 13 13 C 1.40405 * 121.20725 * 0.02562 * 12 11 10 14 14 C 1.40210 * 120.74590 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99886 * 154.66736 * 14 13 12 16 16 C 1.40006 * 119.99867 * 334.66514 * 14 13 12 17 17 N 1.30833 * 120.00044 * 334.59314 * 16 14 13 18 18 Si 1.86799 * 120.00110 * 154.59280 * 16 14 13 19 19 H 1.48497 * 109.47325 * 180.02562 * 18 16 14 20 20 H 1.48502 * 109.46900 * 300.00120 * 18 16 14 21 21 H 1.48493 * 109.47280 * 59.99965 * 18 16 14 22 22 H 1.09005 * 109.46798 * 300.00274 * 1 2 3 23 23 H 1.09005 * 109.47204 * 59.99678 * 1 2 3 24 24 H 1.08993 * 109.47334 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46798 * 239.99726 * 2 1 3 26 26 H 1.08993 * 109.46951 * 59.99922 * 3 2 1 27 27 H 1.08998 * 109.47132 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46996 * 299.99673 * 3 2 1 29 29 H 1.07997 * 119.66827 * 0.02562 * 10 9 4 30 30 H 1.08003 * 118.73759 * 179.97438 * 11 10 9 31 31 H 1.08002 * 119.40090 * 179.97438 * 12 11 10 32 32 H 0.97002 * 120.00301 * 354.18481 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7715 -0.3706 2.5026 6 1 1.2304 0.3861 2.7775 7 7 2.4070 -1.2634 3.3734 8 6 3.0519 -2.1639 2.6697 9 6 2.8319 -1.8414 1.2515 10 6 3.4128 -2.6638 0.2663 11 6 4.1795 -3.7489 0.6215 12 6 4.4195 -4.0892 1.9385 13 6 3.8846 -3.3337 2.9942 14 6 4.1340 -3.6881 4.3276 15 1 4.0927 -2.9372 5.1027 16 6 4.4366 -5.0155 4.6542 17 7 4.0225 -5.9892 3.8847 18 14 5.4317 -5.3964 6.1885 19 1 5.6147 -6.8652 6.3079 20 1 6.7597 -4.7387 6.0931 21 1 4.7123 -4.8879 7.3839 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.6768 1.9562 0.8899 27 1 3.1301 1.4424 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 3.2545 -2.4400 -0.7783 30 1 4.6097 -4.3587 -0.1593 31 1 5.0291 -4.9526 2.1604 32 1 3.4358 -5.7997 3.1358 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260776674.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:57 Heat of formation + Delta-G solvation = 39.371771 kcal Electronic energy + Delta-G solvation = -15488.968157 eV Core-core repulsion = 13027.844674 eV Total energy + Delta-G solvation = -2461.123483 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.92249 -38.10482 -36.25004 -35.47180 -32.04537 -31.04401 -29.48589 -28.04859 -26.90251 -24.65130 -22.88634 -22.25311 -20.82874 -18.92975 -18.30098 -17.31545 -16.44912 -15.88846 -15.71585 -15.40538 -15.28652 -14.58084 -14.34524 -13.97617 -13.77652 -13.12625 -13.03046 -12.58095 -12.45104 -12.23040 -12.10777 -11.99336 -11.90723 -11.82218 -11.69331 -11.11553 -10.83094 -10.60723 -9.49068 -9.34557 -8.52907 -6.27316 0.10877 1.29139 1.45118 1.49997 1.79939 1.83220 2.01281 2.29570 2.66707 3.47668 3.60261 3.73387 3.91727 4.21163 4.32458 4.52508 4.64392 4.67923 4.73582 4.92046 4.98248 5.02132 5.12747 5.18533 5.32592 5.34733 5.40126 5.49085 5.71553 5.86353 6.11279 6.20163 6.39887 6.57471 6.61217 6.78906 7.04626 7.90698 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043456 B = 0.007062 C = 0.006464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.172315 B = 3963.779696 C = 4330.661042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.020 4.020 3 C -0.141 4.141 4 C 0.071 3.929 5 N -0.435 5.435 6 H 0.445 0.555 7 N -0.331 5.331 8 C 0.045 3.955 9 C -0.176 4.176 10 C -0.229 4.229 11 C -0.069 4.069 12 C -0.319 4.319 13 C 0.098 3.902 14 C -0.504 4.504 15 H 0.071 0.929 16 C 0.001 3.999 17 N -0.791 5.791 18 Si 1.120 2.880 19 H -0.264 1.264 20 H -0.261 1.261 21 H -0.258 1.258 22 H 0.059 0.941 23 H 0.092 0.908 24 H 0.043 0.957 25 H 0.095 0.905 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.092 0.908 29 H 0.118 0.882 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.544 10.010 -5.578 12.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.041 4.041 3 C -0.198 4.198 4 C -0.063 4.063 5 N -0.141 5.141 6 H 0.291 0.709 7 N -0.158 5.158 8 C -0.111 4.111 9 C -0.186 4.186 10 C -0.250 4.250 11 C -0.089 4.089 12 C -0.342 4.342 13 C 0.092 3.908 14 C -0.532 4.532 15 H 0.089 0.911 16 C -0.217 4.217 17 N -0.412 5.412 18 Si 0.935 3.065 19 H -0.188 1.188 20 H -0.186 1.186 21 H -0.183 1.183 22 H 0.078 0.922 23 H 0.111 0.889 24 H 0.063 0.937 25 H 0.113 0.887 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.110 0.890 29 H 0.136 0.864 30 H 0.127 0.873 31 H 0.107 0.893 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.181 9.112 -3.576 10.644 hybrid contribution -0.751 1.029 -1.435 1.919 sum -4.932 10.141 -5.011 12.340 Atomic orbital electron populations 1.21855 0.92473 1.01978 1.03591 1.19890 0.96846 0.96069 0.91253 1.21847 1.00908 0.93512 1.03559 1.21417 1.00048 0.96948 0.87872 1.45895 1.40325 1.24695 1.03196 0.70899 1.76961 1.17810 1.05790 1.15278 1.22685 0.98534 0.96870 0.93050 1.19598 1.06247 0.99264 0.93467 1.19751 1.09127 0.99661 0.96426 1.20360 0.97275 0.96141 0.95100 1.20323 1.13674 1.07866 0.92383 1.18028 0.89646 0.88828 0.94290 1.20688 1.40701 0.97798 0.94025 0.91112 1.28665 0.96053 0.91243 1.05762 1.70508 1.20569 1.36036 1.14129 0.82990 0.75670 0.77581 0.70210 1.18760 1.18594 1.18263 0.92206 0.88897 0.93748 0.88712 0.92207 0.93577 0.88960 0.86395 0.87335 0.89318 0.89778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.18 71.98 0.66 -2.11 16 2 C -0.02 -0.50 3.34 -11.54 -0.04 -0.53 16 3 C -0.14 -2.71 9.18 71.98 0.66 -2.05 16 4 C 0.07 2.60 5.81 42.26 0.25 2.84 16 5 N -0.43 -16.13 7.20 -46.52 -0.33 -16.46 16 6 H 0.45 12.29 8.96 -213.40 -1.91 10.38 16 7 N -0.33 -16.42 12.66 -45.03 -0.57 -16.99 16 8 C 0.05 2.46 7.46 43.92 0.33 2.79 16 9 C -0.18 -8.29 6.26 -20.24 -0.13 -8.42 16 10 C -0.23 -10.46 10.01 22.75 0.23 -10.24 16 11 C -0.07 -3.40 9.87 22.07 0.22 -3.18 16 12 C -0.32 -17.75 7.92 22.77 0.18 -17.57 16 13 C 0.10 5.68 5.46 -19.91 -0.11 5.57 16 14 C -0.50 -28.91 9.00 23.18 0.21 -28.70 16 15 H 0.07 4.06 7.96 -2.91 -0.02 4.03 16 16 C 0.00 0.07 4.94 85.27 0.42 0.49 16 17 N -0.79 -43.76 12.31 21.84 0.27 -43.49 16 18 Si 1.12 44.00 30.00 68.60 2.06 46.06 16 19 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 20 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 21 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 22 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 23 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.04 1.02 8.14 -2.39 -0.02 1.01 16 25 H 0.09 2.34 7.89 -2.38 -0.02 2.32 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.12 4.52 7.91 -2.91 -0.02 4.50 16 30 H 0.11 4.63 8.06 -2.91 -0.02 4.60 16 31 H 0.09 5.08 6.44 -2.91 -0.02 5.06 16 32 H 0.29 16.84 6.68 -92.71 -0.62 16.22 16 Total: -1.00 -68.90 274.65 3.66 -65.24 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: -0.64 Total: 26.75 kcal Atomic # 6 Polarization: -63.99 SS G_CDS: 2.88 Total: -61.11 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -0.64 Total: -76.94 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.06 Total: 46.06 kcal Total: -68.90 3.66 -65.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260776674.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.613 kcal (2) G-P(sol) polarization free energy of solvation -68.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds