Wall clock time and date at job start Mon Mar 30 2020 03:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50894 * 1 3 3 C 1.38430 * 117.00708 * 2 1 4 4 C 1.37881 * 120.20894 * 186.23453 * 3 2 1 5 5 C 1.38027 * 119.21688 * 0.87480 * 4 3 2 6 6 C 1.38637 * 120.49424 * 0.32741 * 5 4 3 7 7 C 1.38317 * 120.45165 * 354.52871 * 6 5 4 8 8 C 1.50500 * 122.27907 * 187.40012 * 7 6 5 9 9 H 1.08388 * 110.51991 * 241.24549 * 8 7 6 10 10 C 1.53849 * 109.61909 * 120.29775 * 8 7 6 11 11 C 1.53247 * 111.67280 * 3.25055 * 8 7 6 12 12 C 1.53147 * 108.90612 * 316.62389 * 11 8 7 13 13 C 1.50818 * 117.27593 * 171.44509 * 6 5 4 14 14 H 1.08603 * 109.67597 * 80.01106 * 13 6 5 15 15 C 1.50608 * 109.73667 * 319.22268 * 13 6 5 16 16 H 1.07997 * 120.00104 * 324.87129 * 15 13 6 17 17 C 1.37876 * 119.99871 * 144.87568 * 15 13 6 18 18 N 1.31517 * 120.00102 * 5.09762 * 17 15 13 19 19 Si 1.86795 * 119.99906 * 185.09723 * 17 15 13 20 20 H 1.48499 * 109.47088 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47451 * 119.99924 * 19 17 15 22 22 H 1.48504 * 109.47268 * 239.99849 * 19 17 15 23 23 H 1.09005 * 109.47162 * 266.76220 * 1 2 3 24 24 H 1.09004 * 109.47382 * 26.76372 * 1 2 3 25 25 H 1.09003 * 109.47091 * 146.76357 * 1 2 3 26 26 H 1.08073 * 119.56379 * 5.22390 * 3 2 1 27 27 H 1.07928 * 120.55903 * 180.80758 * 4 3 2 28 28 H 1.08004 * 118.90505 * 179.44213 * 5 4 3 29 29 H 1.08998 * 109.46841 * 60.00240 * 10 8 7 30 30 H 1.08999 * 109.46901 * 179.97438 * 10 8 7 31 31 H 1.08990 * 109.47440 * 300.00147 * 10 8 7 32 32 H 1.09011 * 109.31621 * 76.57461 * 11 8 7 33 33 H 1.08998 * 109.33553 * 196.62693 * 11 8 7 34 34 H 1.08794 * 110.07161 * 190.37445 * 12 11 8 35 35 H 1.08769 * 110.13017 * 312.22203 * 12 11 8 36 36 H 0.96993 * 119.99951 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5089 0.0000 0.0000 3 6 2.1376 1.2333 0.0000 4 6 3.5079 1.3136 -0.1294 5 6 4.2398 0.1526 -0.2767 6 6 3.6062 -1.0802 -0.3015 7 6 2.2464 -1.1743 -0.0665 8 6 1.5454 -2.4982 0.0782 9 1 0.7938 -2.6165 -0.6938 10 6 0.8813 -2.5824 1.4634 11 6 2.5305 -3.6702 0.0128 12 6 3.5274 -3.4179 -1.1220 13 6 4.4443 -2.2810 -0.6622 14 1 5.0145 -2.6026 0.2044 15 6 5.3799 -1.9285 -1.7885 16 1 5.0617 -1.2435 -2.5604 17 6 6.6425 -2.4803 -1.8342 18 7 6.9950 -3.3900 -0.9522 19 14 7.8527 -1.9360 -3.1490 20 1 7.2162 -0.9096 -4.0131 21 1 9.0598 -1.3607 -2.5032 22 1 8.2439 -3.1055 -3.9764 23 1 -0.3634 -0.0580 1.0261 24 1 -0.3634 0.9176 -0.4628 25 1 -0.3633 -0.8596 -0.5633 26 1 1.5457 2.1335 0.0856 27 1 4.0051 2.2714 -0.1171 28 1 5.3120 0.2219 -0.3868 29 1 0.1560 -1.7755 1.5683 30 1 0.3741 -3.5418 1.5654 31 1 1.6427 -2.4894 2.2377 32 1 3.0626 -3.7474 0.9611 33 1 1.9817 -4.5929 -0.1758 34 1 4.1177 -4.3130 -1.3064 35 1 2.9990 -3.1212 -2.0253 36 1 7.8834 -3.7779 -0.9841 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260906362.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:53 Heat of formation + Delta-G solvation = -5.803260 kcal Electronic energy + Delta-G solvation = -16283.174447 eV Core-core repulsion = 13923.632371 eV Total energy + Delta-G solvation = -2359.542076 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.52820 -35.67809 -34.18578 -32.04098 -30.03512 -29.32446 -27.12716 -25.68410 -23.63133 -21.93956 -21.60649 -19.57447 -18.34619 -16.39316 -15.55501 -14.88559 -14.82410 -14.32599 -13.46068 -13.26141 -13.14059 -12.74775 -12.33235 -12.15563 -12.00553 -11.71237 -11.50048 -11.24406 -11.09439 -10.98699 -10.72727 -10.56408 -10.35748 -10.17494 -9.96571 -9.57241 -9.04174 -8.98309 -8.40626 -7.76282 -7.53147 -6.04484 -4.06478 2.13240 2.25864 3.28045 3.36733 3.41555 4.39167 4.55422 5.24008 5.30503 5.35523 5.51077 5.54569 5.62182 5.80749 5.84778 5.90400 6.05851 6.10496 6.11378 6.20727 6.34384 6.39509 6.45796 6.55653 6.67921 6.76107 6.88949 6.89657 7.12409 7.17710 7.27770 7.33942 7.53309 7.73905 7.84150 7.92772 7.98599 8.41849 9.01836 9.56195 11.04217 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.029367 B = 0.009244 C = 0.007536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.235989 B = 3028.220730 C = 3714.607370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.099 4.099 3 C -0.152 4.152 4 C -0.133 4.133 5 C -0.106 4.106 6 C -0.033 4.033 7 C -0.082 4.082 8 C -0.042 4.042 9 H 0.070 0.930 10 C -0.146 4.146 11 C -0.119 4.119 12 C -0.101 4.101 13 C 0.065 3.935 14 H 0.069 0.931 15 C -0.503 4.503 16 H 0.056 0.944 17 C 0.064 3.936 18 N -0.891 5.891 19 Si 0.888 3.112 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.284 1.284 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.105 0.895 27 H 0.108 0.892 28 H 0.124 0.876 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.044 0.956 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.094 3.771 2.991 11.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.099 4.099 3 C -0.170 4.170 4 C -0.151 4.151 5 C -0.124 4.124 6 C -0.034 4.034 7 C -0.082 4.082 8 C -0.060 4.060 9 H 0.088 0.912 10 C -0.204 4.204 11 C -0.157 4.157 12 C -0.139 4.139 13 C 0.047 3.953 14 H 0.087 0.913 15 C -0.541 4.541 16 H 0.074 0.926 17 C -0.138 4.138 18 N -0.529 5.529 19 Si 0.716 3.284 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.123 0.877 27 H 0.126 0.874 28 H 0.142 0.858 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.942 3.658 3.035 11.020 hybrid contribution 0.813 0.390 -0.735 1.163 sum -9.129 4.048 2.300 10.247 Atomic orbital electron populations 1.20838 0.92562 1.01721 1.01257 1.19808 0.94915 0.92938 1.02203 1.20774 0.94793 0.96228 1.05180 1.20978 0.94161 0.98056 1.01921 1.21254 1.00527 0.91580 0.99007 1.20716 0.92527 0.97487 0.92620 1.19392 0.93352 0.93199 1.02268 1.19965 0.96882 0.92424 0.96763 0.91190 1.22137 1.00359 1.00840 0.97017 1.21888 0.97307 0.95742 1.00751 1.21637 0.96078 1.00575 0.95636 1.18036 0.91712 0.87779 0.97757 0.91310 1.21051 0.97830 1.26772 1.08455 0.92592 1.24974 0.98165 0.94792 0.95881 1.69945 1.20130 1.27027 1.35827 0.86588 0.81250 0.78670 0.81868 1.19676 1.20957 1.21059 0.92031 0.92465 0.92012 0.87717 0.87367 0.85827 0.92786 0.93067 0.92767 0.92271 0.93384 0.92108 0.93704 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 8.38 36.10 0.30 -1.15 16 2 C -0.10 -1.71 5.66 -104.24 -0.59 -2.30 16 3 C -0.15 -2.60 9.51 -39.64 -0.38 -2.98 16 4 C -0.13 -2.45 10.07 -39.79 -0.40 -2.85 16 5 C -0.11 -2.27 8.87 -39.51 -0.35 -2.62 16 6 C -0.03 -0.74 5.43 -104.39 -0.57 -1.31 16 7 C -0.08 -1.60 5.16 -104.48 -0.54 -2.13 16 8 C -0.04 -0.72 2.28 -91.30 -0.21 -0.93 16 9 H 0.07 1.13 7.35 -52.27 -0.38 0.75 16 10 C -0.15 -2.11 8.71 37.60 0.33 -1.79 16 11 C -0.12 -2.22 5.20 -26.53 -0.14 -2.36 16 12 C -0.10 -2.27 5.21 -26.59 -0.14 -2.41 16 13 C 0.07 1.61 2.20 -92.85 -0.20 1.41 16 14 H 0.07 1.89 7.35 -52.15 -0.38 1.51 16 15 C -0.50 -13.54 6.95 -34.49 -0.24 -13.78 16 16 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 17 C 0.06 1.74 5.45 -17.82 -0.10 1.64 16 18 N -0.89 -25.32 12.84 55.43 0.71 -24.60 16 19 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H 0.06 0.75 6.93 -51.93 -0.36 0.39 16 24 H 0.06 0.69 7.95 -51.93 -0.41 0.28 16 25 H 0.06 0.80 6.96 -51.93 -0.36 0.44 16 26 H 0.10 1.51 8.00 -52.45 -0.42 1.09 16 27 H 0.11 1.71 8.05 -52.53 -0.42 1.29 16 28 H 0.12 2.77 7.45 -52.48 -0.39 2.38 16 29 H 0.05 0.71 5.41 -51.93 -0.28 0.43 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.82 8.02 -51.93 -0.42 0.41 16 32 H 0.06 1.14 7.73 -51.92 -0.40 0.73 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.46 8.12 -52.04 -0.42 1.03 16 35 H 0.04 1.00 8.08 -52.06 -0.42 0.58 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 282.61 15.07 4.26 4.26 Total: -1.00 -27.98 282.61 -8.74 -36.72 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.47 Total: 1.08 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: -3.22 Total: -33.56 kcal Atomic # 7 Polarization: -25.32 SS G_CDS: 0.71 Total: -24.60 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.98 -8.74 -36.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260906362.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.914 kcal (2) G-P(sol) polarization free energy of solvation -27.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds