Wall clock time and date at job start Mon Mar 30 2020 03:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50894 * 1 3 3 C 1.38430 * 117.00708 * 2 1 4 4 C 1.37881 * 120.20894 * 186.23453 * 3 2 1 5 5 C 1.38027 * 119.21688 * 0.87480 * 4 3 2 6 6 C 1.38637 * 120.49424 * 0.32741 * 5 4 3 7 7 C 1.38317 * 120.45165 * 354.52871 * 6 5 4 8 8 C 1.50500 * 122.27907 * 187.40012 * 7 6 5 9 9 H 1.08388 * 110.51991 * 241.24549 * 8 7 6 10 10 C 1.53849 * 109.61909 * 120.29775 * 8 7 6 11 11 C 1.53247 * 111.67280 * 3.25055 * 8 7 6 12 12 C 1.53147 * 108.90612 * 316.62389 * 11 8 7 13 13 C 1.50818 * 117.27593 * 171.44509 * 6 5 4 14 14 H 1.08603 * 109.67597 * 80.01106 * 13 6 5 15 15 C 1.50608 * 109.73667 * 319.22268 * 13 6 5 16 16 H 1.07997 * 120.00104 * 324.87129 * 15 13 6 17 17 C 1.37876 * 119.99871 * 144.87568 * 15 13 6 18 18 N 1.31517 * 120.00102 * 5.09762 * 17 15 13 19 19 Si 1.86795 * 119.99906 * 185.09723 * 17 15 13 20 20 H 1.48499 * 109.47088 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47451 * 119.99924 * 19 17 15 22 22 H 1.48504 * 109.47268 * 239.99849 * 19 17 15 23 23 H 1.09005 * 109.47162 * 266.76220 * 1 2 3 24 24 H 1.09004 * 109.47382 * 26.76372 * 1 2 3 25 25 H 1.09003 * 109.47091 * 146.76357 * 1 2 3 26 26 H 1.08073 * 119.56379 * 5.22390 * 3 2 1 27 27 H 1.07928 * 120.55903 * 180.80758 * 4 3 2 28 28 H 1.08004 * 118.90505 * 179.44213 * 5 4 3 29 29 H 1.08998 * 109.46841 * 60.00240 * 10 8 7 30 30 H 1.08999 * 109.46901 * 179.97438 * 10 8 7 31 31 H 1.08990 * 109.47440 * 300.00147 * 10 8 7 32 32 H 1.09011 * 109.31621 * 76.57461 * 11 8 7 33 33 H 1.08998 * 109.33553 * 196.62693 * 11 8 7 34 34 H 1.08794 * 110.07161 * 190.37445 * 12 11 8 35 35 H 1.08769 * 110.13017 * 312.22203 * 12 11 8 36 36 H 0.96993 * 119.99951 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5089 0.0000 0.0000 3 6 2.1376 1.2333 0.0000 4 6 3.5079 1.3136 -0.1294 5 6 4.2398 0.1526 -0.2767 6 6 3.6062 -1.0802 -0.3015 7 6 2.2464 -1.1743 -0.0665 8 6 1.5454 -2.4982 0.0782 9 1 0.7938 -2.6165 -0.6938 10 6 0.8813 -2.5824 1.4634 11 6 2.5305 -3.6702 0.0128 12 6 3.5274 -3.4179 -1.1220 13 6 4.4443 -2.2810 -0.6622 14 1 5.0145 -2.6026 0.2044 15 6 5.3799 -1.9285 -1.7885 16 1 5.0617 -1.2435 -2.5604 17 6 6.6425 -2.4803 -1.8342 18 7 6.9950 -3.3900 -0.9522 19 14 7.8527 -1.9360 -3.1490 20 1 7.2162 -0.9096 -4.0131 21 1 9.0598 -1.3607 -2.5032 22 1 8.2439 -3.1055 -3.9764 23 1 -0.3634 -0.0580 1.0261 24 1 -0.3634 0.9176 -0.4628 25 1 -0.3633 -0.8596 -0.5633 26 1 1.5457 2.1335 0.0856 27 1 4.0051 2.2714 -0.1171 28 1 5.3120 0.2219 -0.3868 29 1 0.1560 -1.7755 1.5683 30 1 0.3741 -3.5418 1.5654 31 1 1.6427 -2.4894 2.2377 32 1 3.0626 -3.7474 0.9611 33 1 1.9817 -4.5929 -0.1758 34 1 4.1177 -4.3130 -1.3064 35 1 2.9990 -3.1212 -2.0253 36 1 7.8834 -3.7779 -0.9841 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260906362.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:53 Heat of formation + Delta-G solvation = -19.079720 kcal Electronic energy + Delta-G solvation = -16283.750157 eV Core-core repulsion = 13923.632371 eV Total energy + Delta-G solvation = -2360.117786 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.03057 -37.22523 -35.83440 -33.86829 -31.52259 -30.87142 -28.67131 -27.16790 -25.36830 -23.47512 -23.14503 -21.11605 -19.95104 -18.44748 -17.12659 -16.55222 -16.31764 -15.97945 -14.80034 -14.72071 -14.58936 -14.44392 -13.83019 -13.75636 -13.39824 -13.13987 -12.89501 -12.86960 -12.60997 -12.47836 -12.43250 -12.26199 -11.92203 -11.77350 -11.63523 -11.34117 -10.94175 -10.69418 -10.42059 -9.19929 -9.12429 -8.14889 -6.23221 0.66265 0.75095 1.35657 1.37745 1.49524 2.39787 3.03055 3.14065 3.93889 3.98151 4.21023 4.26208 4.29437 4.48932 4.58690 4.62980 4.74277 4.78292 4.85368 4.87697 4.92395 5.06994 5.10742 5.18548 5.19781 5.23877 5.37875 5.44387 5.52819 5.55912 5.62175 5.66017 5.81041 5.85932 5.97258 6.18905 6.36041 6.46968 6.90488 7.41534 8.93327 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.029367 B = 0.009244 C = 0.007536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.235989 B = 3028.220730 C = 3714.607370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.133 4.133 5 C -0.135 4.135 6 C -0.068 4.068 7 C -0.091 4.091 8 C -0.041 4.041 9 H 0.089 0.911 10 C -0.139 4.139 11 C -0.113 4.113 12 C -0.095 4.095 13 C 0.066 3.934 14 H 0.026 0.974 15 C -0.510 4.510 16 H 0.044 0.956 17 C 0.013 3.987 18 N -0.925 5.925 19 Si 0.951 3.049 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.279 1.279 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.144 0.856 27 H 0.132 0.868 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.031 0.969 35 H 0.042 0.958 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.041 5.157 3.005 14.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.097 4.097 3 C -0.163 4.163 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.068 4.068 7 C -0.091 4.091 8 C -0.059 4.059 9 H 0.107 0.893 10 C -0.196 4.196 11 C -0.150 4.150 12 C -0.133 4.133 13 C 0.047 3.953 14 H 0.044 0.956 15 C -0.548 4.548 16 H 0.062 0.938 17 C -0.186 4.186 18 N -0.565 5.565 19 Si 0.776 3.224 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.205 1.205 23 H 0.101 0.899 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.161 0.839 27 H 0.150 0.850 28 H 0.113 0.887 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.897 5.049 3.047 14.181 hybrid contribution 1.681 0.022 -0.716 1.827 sum -11.217 5.071 2.330 12.528 Atomic orbital electron populations 1.20919 0.89040 1.03247 1.02963 1.20282 0.97375 0.92002 0.99995 1.21253 0.94299 0.97781 1.02990 1.21228 0.95111 0.97747 1.01035 1.21164 0.99566 0.93046 1.01579 1.20565 0.94069 0.96429 0.95780 1.19686 0.92255 0.95471 1.01699 1.20026 0.96472 0.90213 0.99213 0.89334 1.22079 1.00197 1.02980 0.94370 1.21814 0.96897 0.98143 0.98153 1.21446 0.96394 0.98384 0.97065 1.17854 0.92015 0.89944 0.95440 0.95637 1.21264 0.98777 1.25982 1.08765 0.93807 1.25713 0.99871 0.94940 0.98030 1.70066 1.20533 1.28281 1.37577 0.85615 0.79042 0.78332 0.79394 1.19319 1.20432 1.20457 0.89927 0.90414 0.91252 0.83863 0.84972 0.88678 0.90758 0.90833 0.94256 0.93632 0.90702 0.94977 0.93967 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.28 8.38 71.30 0.60 -1.68 16 2 C -0.10 -3.03 5.66 -19.62 -0.11 -3.14 16 3 C -0.15 -4.49 9.51 22.23 0.21 -4.27 16 4 C -0.13 -4.75 10.07 22.13 0.22 -4.53 16 5 C -0.14 -6.03 8.87 22.32 0.20 -5.83 16 6 C -0.07 -3.14 5.43 -19.71 -0.11 -3.25 16 7 C -0.09 -3.43 5.16 -19.77 -0.10 -3.53 16 8 C -0.04 -1.32 2.28 -11.23 -0.03 -1.34 16 9 H 0.09 2.54 7.35 -2.71 -0.02 2.52 16 10 C -0.14 -3.55 8.71 72.27 0.63 -2.92 16 11 C -0.11 -4.17 5.20 30.73 0.16 -4.01 16 12 C -0.09 -4.43 5.21 30.68 0.16 -4.27 16 13 C 0.07 3.46 2.20 -12.24 -0.03 3.43 16 14 H 0.03 1.53 7.35 -2.60 -0.02 1.51 16 15 C -0.51 -29.00 6.95 25.57 0.18 -28.82 16 16 H 0.04 2.53 7.81 -2.91 -0.02 2.51 16 17 C 0.01 0.72 5.45 84.65 0.46 1.18 16 18 N -0.92 -55.36 12.84 21.45 0.28 -55.09 16 19 Si 0.95 44.95 29.54 68.60 2.03 46.97 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 23 H 0.08 1.50 6.93 -2.38 -0.02 1.48 16 24 H 0.08 1.41 7.95 -2.38 -0.02 1.39 16 25 H 0.07 1.43 6.96 -2.39 -0.02 1.42 16 26 H 0.14 3.34 8.00 -2.87 -0.02 3.31 16 27 H 0.13 3.95 8.05 -2.95 -0.02 3.93 16 28 H 0.09 4.61 7.45 -2.91 -0.02 4.59 16 29 H 0.07 1.59 5.41 -2.39 -0.01 1.58 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.04 1.11 8.02 -2.39 -0.02 1.09 16 32 H 0.04 1.79 7.73 -2.38 -0.02 1.77 16 33 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.03 1.62 8.12 -2.50 -0.02 1.60 16 35 H 0.04 1.94 8.08 -2.51 -0.02 1.92 16 36 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -64.37 282.61 5.79 -58.58 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 1.04 Total: 12.52 kcal Atomic # 6 Polarization: -65.43 SS G_CDS: 2.45 Total: -62.99 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.28 Total: -55.09 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -64.37 5.79 -58.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260906362.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.504 kcal (2) G-P(sol) polarization free energy of solvation -64.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds