Wall clock time and date at job start Mon Mar 30 2020 03:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37974 * 119.72898 * 2 1 4 4 C 1.38221 * 119.77148 * 179.97438 * 3 2 1 5 5 C 1.37977 * 119.77092 * 0.12691 * 4 3 2 6 6 C 1.38860 * 120.54455 * 0.02562 * 5 4 3 7 7 C 1.37705 * 119.68920 * 359.77857 * 6 5 4 8 8 C 1.50632 * 122.57015 * 180.30202 * 7 6 5 9 9 H 1.08998 * 109.22407 * 222.22026 * 8 7 6 10 10 C 1.52998 * 109.25446 * 102.77255 * 8 7 6 11 11 C 1.52740 * 110.59252 * 342.48407 * 8 7 6 12 12 C 1.53324 * 108.39126 * 51.02822 * 11 8 7 13 13 C 1.50636 * 117.75130 * 179.67154 * 6 5 4 14 14 H 1.09004 * 109.25481 * 282.75968 * 13 6 5 15 15 C 1.50696 * 109.25354 * 42.22727 * 13 6 5 16 16 H 1.08001 * 119.99981 * 35.06303 * 15 13 6 17 17 C 1.37881 * 120.00440 * 215.05484 * 15 13 6 18 18 N 1.31512 * 119.99599 * 5.97502 * 17 15 13 19 19 Si 1.86799 * 120.00300 * 185.97310 * 17 15 13 20 20 H 1.48499 * 109.47226 * 90.00405 * 19 17 15 21 21 H 1.48498 * 109.47120 * 210.00134 * 19 17 15 22 22 H 1.48500 * 109.47165 * 329.99943 * 19 17 15 23 23 H 1.08996 * 109.46813 * 269.93664 * 1 2 3 24 24 H 1.08996 * 109.46884 * 29.93383 * 1 2 3 25 25 H 1.08992 * 109.47143 * 149.93499 * 1 2 3 26 26 H 1.07998 * 120.10947 * 359.97438 * 3 2 1 27 27 H 1.07996 * 120.11153 * 180.09805 * 4 3 2 28 28 H 1.08004 * 119.73002 * 180.02562 * 5 4 3 29 29 H 1.09004 * 109.46655 * 298.89325 * 10 8 7 30 30 H 1.08990 * 109.47467 * 58.89238 * 10 8 7 31 31 H 1.09004 * 109.47157 * 178.89753 * 10 8 7 32 32 H 1.08994 * 109.68022 * 170.75298 * 11 8 7 33 33 H 1.08999 * 109.67914 * 291.30601 * 11 8 7 34 34 H 1.08995 * 109.68456 * 49.80369 * 12 11 8 35 35 H 1.08996 * 109.68155 * 170.36077 * 12 11 8 36 36 H 0.96998 * 120.00093 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1913 1.1981 0.0000 4 6 3.5735 1.1992 0.0005 5 6 4.2595 0.0020 -0.0016 6 6 3.5727 -1.2049 -0.0048 7 6 2.1957 -1.2060 -0.0012 8 6 1.3858 -2.4761 0.0023 9 1 0.5484 -2.3697 -0.6873 10 6 0.8490 -2.7282 1.4126 11 6 2.2456 -3.6626 -0.4289 12 6 3.5268 -3.6631 0.4133 13 6 4.3844 -2.4738 -0.0146 14 1 4.7654 -2.6490 -1.0208 15 6 5.5436 -2.3295 0.9374 16 1 5.4252 -1.7657 1.8509 17 6 6.7554 -2.9174 0.6424 18 7 6.9360 -3.5033 -0.5211 19 14 8.1406 -2.8816 1.8951 20 1 8.0521 -4.0816 2.7654 21 1 9.4469 -2.8777 1.1887 22 1 8.0242 -1.6570 2.7270 23 1 -0.3633 -0.0011 1.0276 24 1 -0.3633 0.8906 -0.5128 25 1 -0.3633 -0.8893 -0.5148 26 1 1.6486 2.1319 -0.0004 27 1 4.1146 2.1338 0.0021 28 1 5.3395 0.0036 -0.0007 29 1 1.6839 -2.8447 2.1037 30 1 0.2348 -1.8834 1.7240 31 1 0.2460 -3.6363 1.4150 32 1 1.6985 -4.5910 -0.2653 33 1 2.5002 -3.5670 -1.4844 34 1 3.2721 -3.5713 1.4691 35 1 4.0753 -4.5901 0.2467 36 1 7.7886 -3.9166 -0.7289 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260906373.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:58 Heat of formation + Delta-G solvation = -6.282914 kcal Electronic energy + Delta-G solvation = -16342.282665 eV Core-core repulsion = 13982.719790 eV Total energy + Delta-G solvation = -2359.562875 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.62022 -35.76110 -34.15308 -32.03340 -29.83855 -29.29558 -27.03547 -25.78075 -24.00471 -21.86819 -21.78117 -19.65419 -17.88475 -16.34512 -15.72624 -14.95072 -14.61168 -14.20022 -13.81349 -13.29841 -13.01297 -12.59204 -12.39306 -12.19304 -11.90281 -11.73477 -11.56607 -11.43637 -11.12213 -10.93323 -10.69706 -10.52682 -10.45829 -9.98495 -9.91948 -9.54804 -8.97903 -8.91582 -8.50255 -7.78480 -7.56413 -6.04325 -4.06449 2.16033 2.27135 3.29182 3.36378 3.39769 4.40189 4.59911 5.22804 5.28880 5.38653 5.49897 5.56983 5.64222 5.80986 5.88167 5.91351 6.07362 6.13949 6.15225 6.23376 6.37101 6.40834 6.46167 6.53103 6.64498 6.81956 6.89260 6.90007 7.10192 7.18372 7.28992 7.33844 7.54158 7.74126 7.84781 7.91741 7.99737 8.41711 9.01969 9.55952 11.04142 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.029013 B = 0.009302 C = 0.007786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.848692 B = 3009.403390 C = 3595.363611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.099 4.099 3 C -0.148 4.148 4 C -0.134 4.134 5 C -0.106 4.106 6 C -0.027 4.027 7 C -0.091 4.091 8 C -0.044 4.044 9 H 0.066 0.934 10 C -0.143 4.143 11 C -0.119 4.119 12 C -0.101 4.101 13 C 0.062 3.938 14 H 0.073 0.927 15 C -0.505 4.505 16 H 0.055 0.945 17 C 0.065 3.935 18 N -0.892 5.892 19 Si 0.889 3.111 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.105 0.895 27 H 0.108 0.892 28 H 0.127 0.873 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.239 3.911 0.627 10.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.099 4.099 3 C -0.166 4.166 4 C -0.152 4.152 5 C -0.124 4.124 6 C -0.027 4.027 7 C -0.091 4.091 8 C -0.063 4.063 9 H 0.084 0.916 10 C -0.200 4.200 11 C -0.157 4.157 12 C -0.139 4.139 13 C 0.044 3.956 14 H 0.091 0.909 15 C -0.543 4.543 16 H 0.073 0.927 17 C -0.137 4.137 18 N -0.530 5.530 19 Si 0.717 3.283 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.198 1.198 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.124 0.876 27 H 0.126 0.874 28 H 0.145 0.855 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.096 3.815 0.521 10.806 hybrid contribution 0.910 0.105 0.686 1.144 sum -9.187 3.920 1.206 10.061 Atomic orbital electron populations 1.20813 0.92617 1.01836 1.01399 1.19715 0.94983 0.93040 1.02208 1.20640 0.94315 0.96470 1.05174 1.21004 0.94132 0.97801 1.02242 1.21363 1.00800 0.91389 0.98866 1.20497 0.91907 0.97566 0.92752 1.19457 0.93397 0.93368 1.02896 1.19937 0.96571 0.92917 0.96833 0.91551 1.21892 1.00822 1.00326 0.96951 1.21705 0.97648 0.95931 1.00375 1.21687 0.93725 1.00547 0.97970 1.17981 0.91533 0.86497 0.99632 0.90900 1.21034 0.94928 1.32879 1.05458 0.92660 1.24973 0.98368 0.95338 0.95041 1.69909 1.24877 1.37517 1.20727 0.86640 0.81525 0.78552 0.81607 1.20628 1.21283 1.19846 0.91987 0.92648 0.91655 0.87649 0.87415 0.85528 0.91920 0.93149 0.93231 0.93204 0.92484 0.93233 0.92670 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 8.63 36.01 0.31 -1.18 16 2 C -0.10 -1.73 5.83 -104.48 -0.61 -2.34 16 3 C -0.15 -2.54 9.68 -39.68 -0.38 -2.93 16 4 C -0.13 -2.47 10.05 -39.68 -0.40 -2.87 16 5 C -0.11 -2.30 9.04 -39.45 -0.36 -2.65 16 6 C -0.03 -0.60 5.42 -104.62 -0.57 -1.17 16 7 C -0.09 -1.77 5.02 -104.61 -0.52 -2.30 16 8 C -0.04 -0.76 2.21 -91.94 -0.20 -0.96 16 9 H 0.07 1.02 6.28 -51.93 -0.33 0.69 16 10 C -0.14 -2.20 8.84 37.16 0.33 -1.87 16 11 C -0.12 -2.19 5.41 -26.70 -0.14 -2.34 16 12 C -0.10 -2.24 5.19 -26.69 -0.14 -2.37 16 13 C 0.06 1.52 2.32 -93.09 -0.22 1.30 16 14 H 0.07 2.02 7.23 -51.93 -0.38 1.64 16 15 C -0.50 -13.53 6.88 -34.44 -0.24 -13.76 16 16 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 17 C 0.06 1.76 5.45 -17.82 -0.10 1.66 16 18 N -0.89 -25.35 12.77 55.43 0.71 -24.64 16 19 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H 0.06 0.78 7.40 -51.93 -0.38 0.39 16 24 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 25 H 0.06 0.84 5.94 -51.93 -0.31 0.53 16 26 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 27 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 28 H 0.13 2.89 7.27 -52.48 -0.38 2.51 16 29 H 0.06 1.07 6.43 -51.93 -0.33 0.74 16 30 H 0.05 0.71 6.39 -51.93 -0.33 0.38 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 33 H 0.06 1.08 8.10 -51.93 -0.42 0.66 16 34 H 0.05 1.08 6.24 -51.93 -0.32 0.76 16 35 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 279.61 15.07 4.21 4.21 Total: -1.00 -27.87 279.61 -8.60 -36.47 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.26 Total: 1.66 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: -3.24 Total: -33.78 kcal Atomic # 7 Polarization: -25.35 SS G_CDS: 0.71 Total: -24.64 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.87 -8.60 -36.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260906373.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.188 kcal (2) G-P(sol) polarization free energy of solvation -27.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds