Wall clock time and date at job start Mon Mar 30 2020 03:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37974 * 119.72898 * 2 1 4 4 C 1.38221 * 119.77148 * 179.97438 * 3 2 1 5 5 C 1.37977 * 119.77092 * 0.12691 * 4 3 2 6 6 C 1.38860 * 120.54455 * 0.02562 * 5 4 3 7 7 C 1.37705 * 119.68920 * 359.77857 * 6 5 4 8 8 C 1.50632 * 122.57015 * 180.30202 * 7 6 5 9 9 H 1.08998 * 109.22407 * 222.22026 * 8 7 6 10 10 C 1.52998 * 109.25446 * 102.77255 * 8 7 6 11 11 C 1.52740 * 110.59252 * 342.48407 * 8 7 6 12 12 C 1.53324 * 108.39126 * 51.02822 * 11 8 7 13 13 C 1.50636 * 117.75130 * 179.67154 * 6 5 4 14 14 H 1.09004 * 109.25481 * 282.75968 * 13 6 5 15 15 C 1.50696 * 109.25354 * 42.22727 * 13 6 5 16 16 H 1.08001 * 119.99981 * 35.06303 * 15 13 6 17 17 C 1.37881 * 120.00440 * 215.05484 * 15 13 6 18 18 N 1.31512 * 119.99599 * 5.97502 * 17 15 13 19 19 Si 1.86799 * 120.00300 * 185.97310 * 17 15 13 20 20 H 1.48499 * 109.47226 * 90.00405 * 19 17 15 21 21 H 1.48498 * 109.47120 * 210.00134 * 19 17 15 22 22 H 1.48500 * 109.47165 * 329.99943 * 19 17 15 23 23 H 1.08996 * 109.46813 * 269.93664 * 1 2 3 24 24 H 1.08996 * 109.46884 * 29.93383 * 1 2 3 25 25 H 1.08992 * 109.47143 * 149.93499 * 1 2 3 26 26 H 1.07998 * 120.10947 * 359.97438 * 3 2 1 27 27 H 1.07996 * 120.11153 * 180.09805 * 4 3 2 28 28 H 1.08004 * 119.73002 * 180.02562 * 5 4 3 29 29 H 1.09004 * 109.46655 * 298.89325 * 10 8 7 30 30 H 1.08990 * 109.47467 * 58.89238 * 10 8 7 31 31 H 1.09004 * 109.47157 * 178.89753 * 10 8 7 32 32 H 1.08994 * 109.68022 * 170.75298 * 11 8 7 33 33 H 1.08999 * 109.67914 * 291.30601 * 11 8 7 34 34 H 1.08995 * 109.68456 * 49.80369 * 12 11 8 35 35 H 1.08996 * 109.68155 * 170.36077 * 12 11 8 36 36 H 0.96998 * 120.00093 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1913 1.1981 0.0000 4 6 3.5735 1.1992 0.0005 5 6 4.2595 0.0020 -0.0016 6 6 3.5727 -1.2049 -0.0048 7 6 2.1957 -1.2060 -0.0012 8 6 1.3858 -2.4761 0.0023 9 1 0.5484 -2.3697 -0.6873 10 6 0.8490 -2.7282 1.4126 11 6 2.2456 -3.6626 -0.4289 12 6 3.5268 -3.6631 0.4133 13 6 4.3844 -2.4738 -0.0146 14 1 4.7654 -2.6490 -1.0208 15 6 5.5436 -2.3295 0.9374 16 1 5.4252 -1.7657 1.8509 17 6 6.7554 -2.9174 0.6424 18 7 6.9360 -3.5033 -0.5211 19 14 8.1406 -2.8816 1.8951 20 1 8.0521 -4.0816 2.7654 21 1 9.4469 -2.8777 1.1887 22 1 8.0242 -1.6570 2.7270 23 1 -0.3633 -0.0011 1.0276 24 1 -0.3633 0.8906 -0.5128 25 1 -0.3633 -0.8893 -0.5148 26 1 1.6486 2.1319 -0.0004 27 1 4.1146 2.1338 0.0021 28 1 5.3395 0.0036 -0.0007 29 1 1.6839 -2.8447 2.1037 30 1 0.2348 -1.8834 1.7240 31 1 0.2460 -3.6363 1.4150 32 1 1.6985 -4.5910 -0.2653 33 1 2.5002 -3.5670 -1.4844 34 1 3.2721 -3.5713 1.4691 35 1 4.0753 -4.5901 0.2467 36 1 7.7886 -3.9166 -0.7289 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260906373.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:58 Heat of formation + Delta-G solvation = -19.596482 kcal Electronic energy + Delta-G solvation = -16342.859985 eV Core-core repulsion = 13982.719790 eV Total energy + Delta-G solvation = -2360.140195 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.12036 -37.29315 -35.83118 -33.84964 -31.35219 -30.84743 -28.57203 -27.20346 -25.76863 -23.51075 -23.28061 -21.21200 -19.42883 -18.44044 -17.22518 -16.51829 -16.37288 -15.77461 -15.14782 -14.70348 -14.57455 -14.33605 -13.92715 -13.53866 -13.35929 -13.18718 -13.07798 -12.88348 -12.75888 -12.54129 -12.40386 -12.22064 -12.01158 -11.64332 -11.50350 -11.23952 -10.79647 -10.68686 -10.52343 -9.22720 -9.16846 -8.14314 -6.22780 0.68110 0.76246 1.36882 1.37758 1.47984 2.39892 3.07590 3.14398 3.92033 4.01452 4.19376 4.24661 4.28958 4.48145 4.59562 4.62935 4.76714 4.81007 4.87131 4.87694 4.95031 5.03478 5.08107 5.18712 5.20331 5.25639 5.37698 5.46400 5.55195 5.56155 5.60299 5.69977 5.80661 5.86156 5.99717 6.19869 6.35414 6.48583 6.91514 7.41670 8.93454 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.029013 B = 0.009302 C = 0.007786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.848692 B = 3009.403390 C = 3595.363611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.097 4.097 3 C -0.142 4.142 4 C -0.134 4.134 5 C -0.137 4.137 6 C -0.062 4.062 7 C -0.100 4.100 8 C -0.043 4.043 9 H 0.096 0.904 10 C -0.138 4.138 11 C -0.113 4.113 12 C -0.094 4.094 13 C 0.062 3.938 14 H 0.028 0.972 15 C -0.511 4.511 16 H 0.044 0.956 17 C 0.013 3.987 18 N -0.926 5.926 19 Si 0.950 3.050 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.270 1.270 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.144 0.856 27 H 0.131 0.869 28 H 0.095 0.905 29 H 0.036 0.964 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.027 0.973 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.231 5.158 1.386 14.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.097 4.097 3 C -0.159 4.159 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.062 4.062 7 C -0.100 4.100 8 C -0.061 4.061 9 H 0.114 0.886 10 C -0.195 4.195 11 C -0.150 4.150 12 C -0.133 4.133 13 C 0.044 3.956 14 H 0.046 0.954 15 C -0.549 4.549 16 H 0.062 0.938 17 C -0.185 4.185 18 N -0.566 5.566 19 Si 0.776 3.224 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.194 1.194 23 H 0.097 0.903 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.162 0.838 27 H 0.149 0.851 28 H 0.113 0.887 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.096 5.066 1.287 14.100 hybrid contribution 1.785 -0.198 0.427 1.846 sum -11.310 4.868 1.714 12.432 Atomic orbital electron populations 1.20892 0.89064 1.03548 1.02920 1.20209 0.97494 0.92021 0.99968 1.21112 0.93646 0.98193 1.02988 1.21247 0.95318 0.97294 1.01288 1.21254 0.99575 0.93044 1.01667 1.20352 0.93544 0.96306 0.96001 1.19756 0.92285 0.95733 1.02244 1.20021 0.96567 0.90766 0.98699 0.88590 1.21852 1.00342 1.02392 0.94895 1.21641 0.96209 0.98421 0.98755 1.21500 0.95153 0.97982 0.98616 1.17811 0.91966 0.89199 0.96612 0.95440 1.21263 0.96217 1.32092 1.05323 0.93804 1.25713 1.00747 0.95275 0.96741 1.70042 1.25422 1.38775 1.22383 0.85674 0.78695 0.78688 0.79378 1.19918 1.20818 1.19434 0.90321 0.90398 0.90626 0.83785 0.85084 0.88682 0.94489 0.91310 0.90738 0.90415 0.93710 0.93305 0.95424 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.32 8.63 71.24 0.61 -1.70 16 2 C -0.10 -3.03 5.83 -19.77 -0.12 -3.15 16 3 C -0.14 -4.38 9.68 22.20 0.22 -4.16 16 4 C -0.13 -4.80 10.05 22.20 0.22 -4.58 16 5 C -0.14 -6.18 9.04 22.36 0.20 -5.98 16 6 C -0.06 -2.86 5.42 -19.86 -0.11 -2.96 16 7 C -0.10 -3.77 5.02 -19.86 -0.10 -3.87 16 8 C -0.04 -1.35 2.21 -11.65 -0.03 -1.37 16 9 H 0.10 2.52 6.28 -2.39 -0.01 2.50 16 10 C -0.14 -3.79 8.84 71.98 0.64 -3.15 16 11 C -0.11 -4.10 5.41 30.62 0.17 -3.93 16 12 C -0.09 -4.35 5.19 30.62 0.16 -4.19 16 13 C 0.06 3.27 2.32 -12.39 -0.03 3.25 16 14 H 0.03 1.66 7.23 -2.38 -0.02 1.64 16 15 C -0.51 -29.01 6.88 25.60 0.18 -28.83 16 16 H 0.04 2.52 7.82 -2.91 -0.02 2.50 16 17 C 0.01 0.76 5.45 84.66 0.46 1.22 16 18 N -0.93 -55.62 12.77 21.45 0.27 -55.34 16 19 Si 0.95 44.92 29.54 68.60 2.03 46.95 16 20 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 21 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 22 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 23 H 0.08 1.50 7.40 -2.39 -0.02 1.48 16 24 H 0.08 1.37 8.08 -2.39 -0.02 1.35 16 25 H 0.08 1.50 5.94 -2.39 -0.01 1.48 16 26 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 27 H 0.13 3.97 8.06 -2.91 -0.02 3.94 16 28 H 0.09 4.72 7.27 -2.91 -0.02 4.70 16 29 H 0.04 1.20 6.43 -2.39 -0.02 1.18 16 30 H 0.07 1.63 6.39 -2.39 -0.02 1.62 16 31 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.08 2.38 8.12 -2.39 -0.02 2.36 16 33 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 34 H 0.05 2.21 6.24 -2.39 -0.01 2.19 16 35 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -64.47 279.61 5.83 -58.64 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 1.05 Total: 13.16 kcal Atomic # 6 Polarization: -65.88 SS G_CDS: 2.48 Total: -63.40 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 0.27 Total: -55.34 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -64.47 5.83 -58.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260906373.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.045 kcal (2) G-P(sol) polarization free energy of solvation -64.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds