Wall clock time and date at job start Mon Mar 30 2020 02:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47206 * 2 1 4 4 N 1.46501 * 109.47685 * 239.99733 * 2 1 3 5 5 C 1.34002 * 124.98974 * 84.99689 * 4 2 1 6 6 C 1.39034 * 107.71725 * 180.02562 * 5 4 2 7 7 C 1.40145 * 134.27485 * 179.97438 * 6 5 4 8 8 C 1.39780 * 119.86597 * 180.02562 * 7 6 5 9 9 C 1.40997 * 119.51651 * 179.97438 * 8 7 6 10 10 H 1.08008 * 119.99868 * 149.83740 * 9 8 7 11 11 C 1.39771 * 120.00393 * 329.84897 * 9 8 7 12 12 N 1.30947 * 120.00380 * 161.57825 * 11 9 8 13 13 Si 1.86800 * 119.99798 * 341.57397 * 11 9 8 14 14 H 1.48498 * 109.47027 * 95.42132 * 13 11 9 15 15 H 1.48504 * 109.47327 * 215.42155 * 13 11 9 16 16 H 1.48505 * 109.47173 * 335.42290 * 13 11 9 17 17 C 1.45969 * 120.96635 * 0.02562 * 8 7 6 18 18 C 1.35059 * 120.92828 * 359.97438 * 17 8 7 19 19 C 1.46010 * 119.61916 * 0.02562 * 18 17 8 20 20 N 1.31771 * 134.01958 * 180.34656 * 19 18 17 21 21 H 1.09001 * 109.47634 * 299.99938 * 1 2 3 22 22 H 1.09000 * 109.46982 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47286 * 60.00392 * 1 2 3 24 24 H 1.09002 * 109.47286 * 119.99608 * 2 1 3 25 25 H 1.09004 * 109.47272 * 59.99534 * 3 2 1 26 26 H 1.09000 * 109.47315 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46678 * 299.99980 * 3 2 1 28 28 H 1.07997 * 126.14935 * 0.02562 * 5 4 2 29 29 H 1.08000 * 120.06286 * 359.97438 * 7 6 5 30 30 H 0.97001 * 120.00246 * 179.97438 * 12 11 9 31 31 H 1.08000 * 119.53765 * 179.97438 * 17 8 7 32 32 H 1.07998 * 120.19147 * 180.02562 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1844 -0.1218 -2.3980 6 6 2.6604 -1.0979 -3.2660 7 6 3.0157 -1.1127 -4.6216 8 6 3.4717 -2.2963 -5.2089 9 6 3.8266 -2.3029 -6.5734 10 1 4.5920 -2.9769 -6.9291 11 6 3.1881 -1.4372 -7.4659 12 7 3.7348 -1.1728 -8.6260 13 14 1.5548 -0.6574 -7.0036 14 1 1.7947 0.6923 -6.4329 15 1 0.7027 -0.5388 -8.2141 16 1 0.8686 -1.5060 -5.9964 17 6 3.5848 -3.5259 -4.4304 18 6 3.2522 -3.5520 -3.1216 19 6 2.7719 -2.3343 -2.4747 20 7 2.3849 -2.0396 -1.2501 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.9843 0.9097 -2.6477 29 1 2.9365 -0.2115 -5.2115 30 1 3.2915 -0.5723 -9.2455 31 1 3.9395 -4.4275 -4.9076 32 1 3.3409 -4.4682 -2.5569 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260945159.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:37 Heat of formation + Delta-G solvation = 63.216047 kcal Electronic energy + Delta-G solvation = -15424.114459 eV Core-core repulsion = 12964.024942 eV Total energy + Delta-G solvation = -2460.089518 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.79593 -38.20994 -36.18227 -34.79479 -32.52011 -30.83639 -30.17117 -28.22855 -26.67255 -24.67864 -22.23056 -22.14006 -20.72169 -19.32649 -18.05706 -17.36785 -16.91769 -16.10289 -15.41973 -15.32264 -15.17708 -14.62902 -14.39019 -14.02885 -13.77396 -13.36493 -13.16509 -13.09582 -12.64713 -12.51614 -12.39343 -12.20606 -11.99890 -11.75614 -11.69969 -11.18331 -10.81957 -10.62275 -9.32586 -8.83918 -8.51471 -6.26977 0.03721 1.06579 1.30937 1.43846 1.53242 1.64498 1.71375 2.20258 2.62805 3.42629 3.49321 3.84294 3.90002 3.97688 4.10493 4.28481 4.54247 4.63283 4.67564 4.76192 4.77357 4.81600 4.89325 5.01754 5.16105 5.21148 5.28169 5.46128 5.65428 5.85932 5.89613 6.09218 6.29456 6.44852 6.70593 6.90576 6.98560 8.24040 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032825 B = 0.008104 C = 0.007028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.800607 B = 3454.095065 C = 3983.369427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.139 3.861 3 C -0.158 4.158 4 N -0.325 5.325 5 C 0.006 3.994 6 C -0.159 4.159 7 C -0.267 4.267 8 C 0.044 3.956 9 C -0.466 4.466 10 H 0.065 0.935 11 C 0.049 3.951 12 N -0.853 5.853 13 Si 0.969 3.031 14 H -0.265 1.265 15 H -0.284 1.284 16 H -0.262 1.262 17 C -0.098 4.098 18 C -0.097 4.097 19 C 0.034 3.966 20 N -0.331 5.331 21 H 0.110 0.890 22 H 0.045 0.955 23 H 0.059 0.941 24 H 0.105 0.895 25 H 0.113 0.887 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.196 0.804 29 H 0.090 0.910 30 H 0.291 0.709 31 H 0.136 0.864 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.743 5.531 14.608 17.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.039 3.961 3 C -0.216 4.216 4 N -0.106 5.106 5 C -0.145 4.145 6 C -0.168 4.168 7 C -0.289 4.289 8 C 0.041 3.959 9 C -0.496 4.496 10 H 0.083 0.917 11 C -0.165 4.165 12 N -0.480 5.480 13 Si 0.794 3.206 14 H -0.191 1.191 15 H -0.212 1.212 16 H -0.186 1.186 17 C -0.120 4.120 18 C -0.118 4.118 19 C -0.120 4.120 20 N -0.159 5.159 21 H 0.129 0.871 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.123 0.877 25 H 0.131 0.869 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.213 0.787 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.154 0.846 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.936 5.232 15.677 17.924 hybrid contribution -0.149 0.501 -1.338 1.436 sum -7.085 5.734 14.339 16.991 Atomic orbital electron populations 1.22209 0.92341 1.02534 1.04413 1.21741 0.95911 0.93874 0.84574 1.22203 1.01764 0.92386 1.05201 1.48696 1.46514 1.06368 1.09008 1.22606 1.06452 0.99609 0.85866 1.19623 1.08374 0.93383 0.95426 1.19874 1.19571 0.96874 0.92559 1.18504 0.93044 0.91257 0.93074 1.19348 1.19299 1.18627 0.92363 0.91680 1.26694 1.01790 0.93860 0.94125 1.69778 1.38928 1.30076 1.09249 0.85369 0.78606 0.79513 0.77078 1.19114 1.21156 1.18586 1.22253 0.98984 0.97392 0.93402 1.20930 1.02507 0.94399 0.93924 1.22216 1.02564 0.95991 0.91229 1.77035 1.26000 0.93982 1.18845 0.87117 0.93542 0.92199 0.87679 0.86869 0.92483 0.91166 0.78719 0.89207 0.89854 0.84585 0.83857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.52 71.98 0.69 -2.20 16 2 C 0.14 3.07 3.87 44.99 0.17 3.25 16 3 C -0.16 -2.51 8.80 71.98 0.63 -1.88 16 4 N -0.33 -11.08 3.47 -325.10 -1.13 -12.20 16 5 C 0.01 0.21 10.64 84.55 0.90 1.11 16 6 C -0.16 -7.35 6.30 -20.27 -0.13 -7.47 16 7 C -0.27 -13.55 7.18 23.11 0.17 -13.38 16 8 C 0.04 2.32 5.23 -20.23 -0.11 2.21 16 9 C -0.47 -26.23 9.53 23.32 0.22 -26.01 16 10 H 0.07 3.83 8.06 -2.91 -0.02 3.81 16 11 C 0.05 2.68 5.38 85.20 0.46 3.13 16 12 N -0.85 -47.50 13.93 21.80 0.30 -47.20 16 13 Si 0.97 45.26 24.51 68.60 1.68 46.94 16 14 H -0.27 -11.86 6.71 99.48 0.67 -11.19 16 15 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 16 H -0.26 -12.79 6.88 99.48 0.68 -12.11 16 17 C -0.10 -4.43 9.85 23.54 0.23 -4.20 16 18 C -0.10 -4.08 10.26 23.55 0.24 -3.83 16 19 C 0.03 1.56 7.66 43.53 0.33 1.89 16 20 N -0.33 -13.62 12.51 -45.53 -0.57 -14.19 16 21 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.11 1.03 8.14 -2.38 -0.02 1.02 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.07 1.10 7.05 -2.39 -0.02 1.08 16 28 H 0.20 5.75 7.14 -2.91 -0.02 5.73 16 29 H 0.09 4.61 4.69 -2.91 -0.01 4.59 16 30 H 0.29 14.65 8.30 -92.71 -0.77 13.88 16 31 H 0.14 5.41 8.06 -2.91 -0.02 5.39 16 32 H 0.14 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -67.19 269.55 5.15 -62.04 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 1.05 Total: 11.98 kcal Atomic # 6 Polarization: -51.18 SS G_CDS: 3.81 Total: -47.37 kcal Atomic # 7 Polarization: -72.20 SS G_CDS: -1.39 Total: -73.59 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.68 Total: 46.94 kcal Total: -67.19 5.15 -62.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260945159.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.258 kcal (2) G-P(sol) polarization free energy of solvation -67.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds