Wall clock time and date at job start Mon Mar 30 2020 03:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38256 * 120.00092 * 2 1 4 4 C 1.38209 * 119.99907 * 179.76402 * 3 2 1 5 5 C 1.38260 * 120.00092 * 0.53621 * 4 3 2 6 6 C 1.38212 * 119.99650 * 359.45889 * 5 4 3 7 7 C 1.38216 * 119.99819 * 180.02562 * 2 1 3 8 8 C 1.50700 * 120.00003 * 359.97438 * 7 2 1 9 9 C 1.53001 * 109.47217 * 84.97747 * 8 7 2 10 10 H 1.09000 * 115.54613 * 330.67084 * 9 8 7 11 11 C 1.52994 * 117.49949 * 116.37772 * 9 8 7 12 12 C 1.52996 * 60.00109 * 107.48707 * 11 9 8 13 13 H 1.08996 * 117.50393 * 252.50730 * 12 11 9 14 14 C 1.53003 * 117.49713 * 107.48617 * 12 11 9 15 15 C 1.50698 * 109.47089 * 116.37782 * 14 12 11 16 16 H 1.08004 * 119.99863 * 0.02562 * 15 14 12 17 17 C 1.37878 * 120.00437 * 180.02562 * 15 14 12 18 18 N 1.31517 * 119.99416 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00324 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47321 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47353 * 120.00003 * 19 17 15 22 22 H 1.48508 * 109.47138 * 240.00147 * 19 17 15 23 23 H 1.08990 * 109.46945 * 269.98333 * 1 2 3 24 24 H 1.09001 * 109.46746 * 29.97972 * 1 2 3 25 25 H 1.08996 * 109.46909 * 149.97638 * 1 2 3 26 26 H 1.08000 * 120.00073 * 359.97438 * 3 2 1 27 27 H 1.08004 * 120.00239 * 180.27311 * 4 3 2 28 28 H 1.08002 * 120.00476 * 179.74522 * 5 4 3 29 29 H 1.07999 * 119.99941 * 180.27784 * 6 5 4 30 30 H 1.08995 * 109.47030 * 204.97886 * 8 7 2 31 31 H 1.08997 * 109.47107 * 324.97449 * 8 7 2 32 32 H 1.08998 * 117.49989 * 214.98273 * 11 9 8 33 33 H 1.09002 * 117.49819 * 0.02562 * 11 9 8 34 34 H 1.08993 * 109.47482 * 236.38112 * 14 12 11 35 35 H 1.09001 * 109.46934 * 356.38443 * 14 12 11 36 36 H 0.97000 * 119.99519 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1973 0.0049 5 6 4.2718 -0.0001 -0.0013 6 6 3.5807 -1.1970 -0.0012 7 6 2.1981 -1.1970 -0.0005 8 6 1.4446 -2.5021 -0.0005 9 6 1.0796 -2.8803 -1.4374 10 1 0.9344 -2.0440 -2.1212 11 6 1.6910 -4.1616 -2.0077 12 6 0.2061 -4.1197 -1.6415 13 1 -0.1087 -4.6657 -0.7522 14 6 -0.8042 -4.0905 -2.7902 15 6 -1.6457 -5.3401 -2.7509 16 1 -1.4771 -6.0808 -1.9832 17 6 -2.6308 -5.5378 -3.6951 18 7 -2.8358 -4.6361 -4.6302 19 14 -3.6743 -7.0864 -3.6459 20 1 -3.2469 -7.9353 -2.5050 21 1 -5.1027 -6.7157 -3.4799 22 1 -3.5025 -7.8395 -4.9143 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8897 -0.5142 26 1 1.6584 2.1326 -0.0004 27 1 4.1205 2.1326 0.0094 28 1 5.3518 -0.0001 -0.0017 29 1 4.1206 -2.1323 -0.0016 30 1 2.0698 -3.2826 0.4330 31 1 0.5344 -2.3961 0.5896 32 1 1.9483 -4.1685 -3.0668 33 1 2.3529 -4.7354 -1.3590 34 1 -1.4469 -3.2163 -2.6868 35 1 -0.2725 -4.0403 -3.7404 36 1 -3.5286 -4.7754 -5.2947 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260950117.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:53 Heat of formation + Delta-G solvation = 19.578952 kcal Electronic energy + Delta-G solvation = -15113.492876 eV Core-core repulsion = 12755.051455 eV Total energy + Delta-G solvation = -2358.441421 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.55244 -37.14433 -33.25488 -32.62946 -31.77624 -28.53840 -27.12683 -26.12439 -23.17227 -21.98261 -21.16509 -19.90227 -19.34237 -16.37388 -16.19125 -15.48793 -14.97588 -14.51563 -14.17662 -13.66906 -13.21974 -13.09633 -12.82870 -12.30869 -12.19191 -12.05555 -11.84331 -11.67445 -10.99782 -10.92980 -10.87857 -10.79795 -10.65651 -10.46344 -9.84119 -9.30464 -9.07918 -8.76341 -8.65603 -8.41605 -8.22345 -5.98079 -3.99647 1.44977 1.47837 3.32398 3.39806 3.44073 3.83524 4.45142 4.55539 4.87967 4.95026 5.05574 5.09305 5.36911 5.40324 5.49621 5.51024 5.67320 5.75833 5.80625 5.82122 5.87442 5.97846 6.09594 6.19367 6.29633 6.35663 6.38799 6.56512 6.59762 6.80316 6.82441 6.89177 7.11528 7.14672 7.70953 7.81077 8.01474 8.45434 9.06378 9.63792 11.13269 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.047278 B = 0.004722 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.105339 B = 5928.571715 C = 6199.046983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.080 4.080 3 C -0.122 4.122 4 C -0.129 4.129 5 C -0.128 4.128 6 C -0.114 4.114 7 C -0.068 4.068 8 C -0.050 4.050 9 C -0.164 4.164 10 H 0.097 0.903 11 C -0.182 4.182 12 C -0.112 4.112 13 H 0.091 0.909 14 C 0.046 3.954 15 C -0.514 4.514 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.021 0.979 35 H 0.018 0.982 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.974 9.519 9.820 17.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.080 4.080 3 C -0.140 4.140 4 C -0.147 4.147 5 C -0.147 4.147 6 C -0.132 4.132 7 C -0.068 4.068 8 C -0.087 4.087 9 C -0.182 4.182 10 H 0.115 0.885 11 C -0.219 4.219 12 C -0.130 4.130 13 H 0.109 0.891 14 C 0.009 3.991 15 C -0.552 4.552 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.100 0.900 26 H 0.136 0.864 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.039 0.961 35 H 0.037 0.963 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.860 9.549 9.670 17.396 hybrid contribution -0.455 -0.759 -0.163 0.900 sum 10.404 8.790 9.507 16.611 Atomic orbital electron populations 1.20909 0.91059 1.03736 1.02245 1.19853 0.96272 0.92538 0.99355 1.21008 0.94230 0.97402 1.01396 1.21045 0.94323 0.97808 1.01505 1.21067 0.99519 0.92650 1.01415 1.21045 0.93733 0.97985 1.00410 1.19855 0.93582 0.94850 0.98531 1.20211 0.99175 0.93085 0.96208 1.22310 1.07607 0.92723 0.95581 0.88486 1.23083 0.98034 1.00098 1.00715 1.22813 0.91493 0.96858 1.01813 0.89115 1.18775 0.92185 0.97153 0.90953 1.21279 1.16492 1.04798 1.12623 0.92582 1.25024 0.97418 0.96595 0.95532 1.69979 1.33049 1.34537 1.16069 0.86542 0.80199 0.83410 0.77893 1.19740 1.21041 1.21062 0.91371 0.91770 0.90024 0.86403 0.86570 0.86522 0.86260 0.91452 0.90672 0.89518 0.90257 0.96075 0.96349 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 9.22 36.01 0.33 -1.22 16 2 C -0.08 -1.08 5.88 -104.62 -0.62 -1.70 16 3 C -0.12 -1.48 9.70 -39.59 -0.38 -1.87 16 4 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 5 C -0.13 -1.49 10.05 -39.58 -0.40 -1.89 16 6 C -0.11 -1.46 9.68 -39.58 -0.38 -1.85 16 7 C -0.07 -0.95 5.09 -104.62 -0.53 -1.49 16 8 C -0.05 -0.73 4.93 -27.88 -0.14 -0.86 16 9 C -0.16 -2.87 4.69 -90.62 -0.43 -3.29 16 10 H 0.10 1.81 8.04 -51.93 -0.42 1.39 16 11 C -0.18 -3.31 9.82 -26.74 -0.26 -3.57 16 12 C -0.11 -2.33 5.42 -90.62 -0.49 -2.82 16 13 H 0.09 1.88 8.00 -51.93 -0.42 1.46 16 14 C 0.05 1.20 5.25 -27.88 -0.15 1.06 16 15 C -0.51 -14.62 9.08 -34.44 -0.31 -14.94 16 16 H 0.06 1.55 7.68 -52.48 -0.40 1.15 16 17 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 19 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 25 H 0.08 1.17 6.15 -51.93 -0.32 0.85 16 26 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 27 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 28 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 30 H 0.07 0.92 7.78 -51.93 -0.40 0.51 16 31 H 0.07 1.08 6.99 -51.93 -0.36 0.71 16 32 H 0.09 1.63 8.03 -51.93 -0.42 1.21 16 33 H 0.08 1.27 8.03 -51.93 -0.42 0.86 16 34 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.02 0.51 7.88 -51.93 -0.41 0.10 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 301.96 15.07 4.55 4.55 Total: -1.00 -30.19 301.96 -9.64 -39.83 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.66 Total: 0.06 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: -4.25 Total: -34.80 kcal Atomic # 7 Polarization: -27.12 SS G_CDS: 0.74 Total: -26.38 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.19 -9.64 -39.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260950117.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.414 kcal (2) G-P(sol) polarization free energy of solvation -30.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds