Wall clock time and date at job start Mon Mar 30 2020 03:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38256 * 120.00092 * 2 1 4 4 C 1.38209 * 119.99907 * 179.76402 * 3 2 1 5 5 C 1.38260 * 120.00092 * 0.53621 * 4 3 2 6 6 C 1.38212 * 119.99650 * 359.45889 * 5 4 3 7 7 C 1.38216 * 119.99819 * 180.02562 * 2 1 3 8 8 C 1.50700 * 120.00003 * 359.97438 * 7 2 1 9 9 C 1.53001 * 109.47217 * 84.97747 * 8 7 2 10 10 H 1.09000 * 115.54613 * 330.67084 * 9 8 7 11 11 C 1.52994 * 117.49949 * 116.37772 * 9 8 7 12 12 C 1.52996 * 60.00109 * 107.48707 * 11 9 8 13 13 H 1.08996 * 117.50393 * 252.50730 * 12 11 9 14 14 C 1.53003 * 117.49713 * 107.48617 * 12 11 9 15 15 C 1.50698 * 109.47089 * 116.37782 * 14 12 11 16 16 H 1.08004 * 119.99863 * 0.02562 * 15 14 12 17 17 C 1.37878 * 120.00437 * 180.02562 * 15 14 12 18 18 N 1.31517 * 119.99416 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00324 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47321 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47353 * 120.00003 * 19 17 15 22 22 H 1.48508 * 109.47138 * 240.00147 * 19 17 15 23 23 H 1.08990 * 109.46945 * 269.98333 * 1 2 3 24 24 H 1.09001 * 109.46746 * 29.97972 * 1 2 3 25 25 H 1.08996 * 109.46909 * 149.97638 * 1 2 3 26 26 H 1.08000 * 120.00073 * 359.97438 * 3 2 1 27 27 H 1.08004 * 120.00239 * 180.27311 * 4 3 2 28 28 H 1.08002 * 120.00476 * 179.74522 * 5 4 3 29 29 H 1.07999 * 119.99941 * 180.27784 * 6 5 4 30 30 H 1.08995 * 109.47030 * 204.97886 * 8 7 2 31 31 H 1.08997 * 109.47107 * 324.97449 * 8 7 2 32 32 H 1.08998 * 117.49989 * 214.98273 * 11 9 8 33 33 H 1.09002 * 117.49819 * 0.02562 * 11 9 8 34 34 H 1.08993 * 109.47482 * 236.38112 * 14 12 11 35 35 H 1.09001 * 109.46934 * 356.38443 * 14 12 11 36 36 H 0.97000 * 119.99519 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1973 0.0049 5 6 4.2718 -0.0001 -0.0013 6 6 3.5807 -1.1970 -0.0012 7 6 2.1981 -1.1970 -0.0005 8 6 1.4446 -2.5021 -0.0005 9 6 1.0796 -2.8803 -1.4374 10 1 0.9344 -2.0440 -2.1212 11 6 1.6910 -4.1616 -2.0077 12 6 0.2061 -4.1197 -1.6415 13 1 -0.1087 -4.6657 -0.7522 14 6 -0.8042 -4.0905 -2.7902 15 6 -1.6457 -5.3401 -2.7509 16 1 -1.4771 -6.0808 -1.9832 17 6 -2.6308 -5.5378 -3.6951 18 7 -2.8358 -4.6361 -4.6302 19 14 -3.6743 -7.0864 -3.6459 20 1 -3.2469 -7.9353 -2.5050 21 1 -5.1027 -6.7157 -3.4799 22 1 -3.5025 -7.8395 -4.9143 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8897 -0.5142 26 1 1.6584 2.1326 -0.0004 27 1 4.1205 2.1326 0.0094 28 1 5.3518 -0.0001 -0.0017 29 1 4.1206 -2.1323 -0.0016 30 1 2.0698 -3.2826 0.4330 31 1 0.5344 -2.3961 0.5896 32 1 1.9483 -4.1685 -3.0668 33 1 2.3529 -4.7354 -1.3590 34 1 -1.4469 -3.2163 -2.6868 35 1 -0.2725 -4.0403 -3.7404 36 1 -3.5286 -4.7754 -5.2947 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260950117.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:53 Heat of formation + Delta-G solvation = 5.646476 kcal Electronic energy + Delta-G solvation = -15114.097033 eV Core-core repulsion = 12755.051455 eV Total energy + Delta-G solvation = -2359.045578 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.55822 -38.63184 -35.08135 -33.93365 -32.88378 -30.39936 -28.30679 -27.23393 -25.23935 -22.96522 -22.35606 -21.18139 -20.98290 -18.47449 -17.22998 -16.64697 -16.44669 -15.88671 -15.60003 -15.04884 -14.46501 -14.30734 -14.02558 -13.88113 -13.69969 -13.49380 -13.04809 -12.92826 -12.77953 -12.63656 -12.38019 -12.22397 -11.84916 -11.78679 -11.62004 -11.38306 -10.84455 -10.50243 -10.28634 -9.62647 -9.37811 -8.19646 -6.30480 0.50348 0.54686 1.40200 1.40521 1.54175 2.41091 2.88498 3.01020 3.15752 3.79038 3.98490 4.04709 4.14172 4.19151 4.26270 4.34390 4.48362 4.56253 4.64231 4.80011 4.81433 4.85364 4.93001 4.97540 5.03524 5.07793 5.27010 5.29952 5.35440 5.44896 5.54073 5.65646 5.66589 5.67802 5.83430 5.86142 6.20734 6.26207 6.85050 7.38412 8.92442 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.047278 B = 0.004722 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.105339 B = 5928.571715 C = 6199.046983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.098 4.098 3 C -0.131 4.131 4 C -0.129 4.129 5 C -0.132 4.132 6 C -0.123 4.123 7 C -0.090 4.090 8 C -0.041 4.041 9 C -0.137 4.137 10 H 0.079 0.921 11 C -0.168 4.168 12 C -0.138 4.138 13 H 0.095 0.905 14 C 0.053 3.947 15 C -0.535 4.535 16 H 0.061 0.939 17 C -0.002 4.002 18 N -0.936 5.936 19 Si 0.967 3.033 20 H -0.261 1.261 21 H -0.277 1.277 22 H -0.278 1.278 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.135 0.865 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.131 0.869 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.110 0.890 34 H -0.009 1.009 35 H -0.011 1.011 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.220 9.403 11.095 18.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.098 4.098 3 C -0.149 4.149 4 C -0.147 4.147 5 C -0.150 4.150 6 C -0.141 4.141 7 C -0.090 4.090 8 C -0.078 4.078 9 C -0.156 4.156 10 H 0.098 0.902 11 C -0.205 4.205 12 C -0.156 4.156 13 H 0.113 0.887 14 C 0.016 3.984 15 C -0.573 4.573 16 H 0.079 0.921 17 C -0.200 4.200 18 N -0.577 5.577 19 Si 0.791 3.209 20 H -0.185 1.185 21 H -0.203 1.203 22 H -0.204 1.204 23 H 0.098 0.902 24 H 0.091 0.909 25 H 0.075 0.925 26 H 0.153 0.847 27 H 0.161 0.839 28 H 0.160 0.840 29 H 0.149 0.851 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.128 0.872 34 H 0.009 0.991 35 H 0.007 0.993 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.116 9.436 10.957 18.866 hybrid contribution -0.804 -0.631 -0.583 1.177 sum 11.313 8.806 10.374 17.695 Atomic orbital electron populations 1.20875 0.91164 1.02920 1.02765 1.20037 0.96505 0.93202 1.00063 1.21287 0.94978 0.97587 1.01080 1.21431 0.94161 0.99022 1.00049 1.21419 1.00932 0.92233 1.00421 1.21279 0.93351 0.99234 1.00277 1.19862 0.94285 0.94447 1.00386 1.20123 0.99663 0.94270 0.93757 1.22231 1.04801 0.91224 0.97311 0.90231 1.23149 0.95961 1.00514 1.00898 1.22475 0.92043 1.00722 1.00364 0.88709 1.18567 0.92662 0.95374 0.91762 1.21695 1.17113 1.05592 1.12878 0.92094 1.26003 0.98805 1.00200 0.94960 1.70116 1.33876 1.36769 1.16892 0.85371 0.78201 0.78973 0.78337 1.18478 1.20307 1.20414 0.90200 0.90922 0.92455 0.84681 0.83886 0.84002 0.85095 0.89918 0.90743 0.90554 0.87180 0.99113 0.99312 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 9.22 71.24 0.66 -2.39 16 2 C -0.10 -2.56 5.88 -19.86 -0.12 -2.68 16 3 C -0.13 -2.94 9.70 22.27 0.22 -2.73 16 4 C -0.13 -2.56 10.05 22.27 0.22 -2.34 16 5 C -0.13 -2.69 10.05 22.27 0.22 -2.47 16 6 C -0.12 -2.92 9.68 22.27 0.22 -2.70 16 7 C -0.09 -2.41 5.09 -19.87 -0.10 -2.52 16 8 C -0.04 -1.16 4.93 29.85 0.15 -1.02 16 9 C -0.14 -4.83 4.69 -10.80 -0.05 -4.89 16 10 H 0.08 3.08 8.04 -2.39 -0.02 3.06 16 11 C -0.17 -6.01 9.82 30.59 0.30 -5.71 16 12 C -0.14 -5.88 5.42 -10.79 -0.06 -5.94 16 13 H 0.09 3.94 8.00 -2.39 -0.02 3.92 16 14 C 0.05 2.92 5.25 29.85 0.16 3.08 16 15 C -0.53 -31.17 9.08 25.60 0.23 -30.94 16 16 H 0.06 3.40 7.68 -2.91 -0.02 3.38 16 17 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 18 N -0.94 -58.12 13.29 21.45 0.28 -57.83 16 19 Si 0.97 44.90 29.54 68.60 2.03 46.92 16 20 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.07 1.65 8.09 -2.39 -0.02 1.63 16 25 H 0.06 1.71 6.15 -2.39 -0.01 1.69 16 26 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 27 H 0.14 2.02 8.06 -2.91 -0.02 1.99 16 28 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 29 H 0.13 2.69 8.06 -2.91 -0.02 2.66 16 30 H 0.08 2.08 7.78 -2.39 -0.02 2.06 16 31 H 0.07 2.11 6.99 -2.39 -0.02 2.09 16 32 H 0.08 2.88 8.03 -2.39 -0.02 2.86 16 33 H 0.11 3.26 8.03 -2.39 -0.02 3.24 16 34 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 35 H -0.01 -0.68 7.88 -2.39 -0.02 -0.70 16 36 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -66.11 301.96 5.85 -60.26 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 1.03 Total: 13.57 kcal Atomic # 6 Polarization: -65.43 SS G_CDS: 2.51 Total: -62.92 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.28 Total: -57.83 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -66.11 5.85 -60.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260950117.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.904 kcal (2) G-P(sol) polarization free energy of solvation -66.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds