Wall clock time and date at job start Mon Mar 30 2020 03:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38256 * 119.99651 * 2 1 4 4 C 1.38222 * 119.99585 * 180.27329 * 3 2 1 5 5 C 1.38252 * 119.99890 * 359.74878 * 4 3 2 6 6 C 1.38218 * 120.00377 * 359.97235 * 5 4 3 7 7 C 1.38214 * 120.00239 * 179.74275 * 2 1 3 8 8 C 1.50701 * 119.99701 * 359.97438 * 7 2 1 9 9 C 1.52997 * 109.47212 * 84.72607 * 8 7 2 10 10 H 1.09003 * 115.54930 * 330.58408 * 9 8 7 11 11 C 1.53007 * 117.50172 * 116.24926 * 9 8 7 12 12 C 1.52998 * 117.50247 * 184.91177 * 9 8 7 13 13 H 1.08999 * 117.50263 * 145.02270 * 12 9 8 14 14 C 1.53007 * 117.49713 * 359.97438 * 12 9 8 15 15 C 1.50699 * 109.46860 * 174.99893 * 14 12 9 16 16 H 1.07992 * 120.00205 * 0.02562 * 15 14 12 17 17 C 1.37878 * 119.99372 * 180.02562 * 15 14 12 18 18 N 1.31513 * 120.00558 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99823 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47354 * 89.99570 * 19 17 15 21 21 H 1.48499 * 109.47271 * 210.00026 * 19 17 15 22 22 H 1.48507 * 109.46947 * 329.99766 * 19 17 15 23 23 H 1.09002 * 109.47248 * 270.25241 * 1 2 3 24 24 H 1.09000 * 109.46927 * 30.25572 * 1 2 3 25 25 H 1.08999 * 109.47307 * 150.25403 * 1 2 3 26 26 H 1.08004 * 120.00775 * 0.04060 * 3 2 1 27 27 H 1.08000 * 119.99418 * 179.76864 * 4 3 2 28 28 H 1.08003 * 119.99889 * 180.02562 * 5 4 3 29 29 H 1.07998 * 120.00148 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.47060 * 204.72662 * 8 7 2 31 31 H 1.09001 * 109.47380 * 324.72750 * 8 7 2 32 32 H 1.08996 * 117.50017 * 214.98378 * 11 9 8 33 33 H 1.08997 * 117.49263 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.47035 * 295.00264 * 14 12 9 35 35 H 1.08999 * 109.46641 * 54.99710 * 14 12 9 36 36 H 0.96998 * 120.00451 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0057 5 6 4.2717 0.0001 -0.0062 6 6 3.5807 -1.1970 -0.0003 7 6 2.1981 -1.1969 0.0054 8 6 1.4446 -2.5020 0.0118 9 6 1.0742 -2.8842 -1.4226 10 1 0.9249 -2.0497 -2.1078 11 6 1.6859 -4.1655 -1.9928 12 6 0.2017 -4.1253 -1.6202 13 1 -0.5215 -4.1076 -2.4356 14 6 -0.2333 -4.8897 -0.3682 15 6 -1.1784 -5.9967 -0.7586 16 1 -1.4421 -6.1409 -1.7958 17 6 -1.7064 -6.8253 0.2087 18 7 -1.3849 -6.6501 1.4718 19 14 -2.8773 -8.1980 -0.2752 20 1 -2.1026 -9.4330 -0.5576 21 1 -3.8275 -8.4532 0.8372 22 1 -3.6329 -7.7990 -1.4898 23 1 -0.3634 0.0045 1.0277 24 1 -0.3633 0.8877 -0.5178 25 1 -0.3634 -0.8922 -0.5099 26 1 1.6583 2.1328 0.0007 27 1 4.1203 2.1327 -0.0095 28 1 5.3517 0.0000 -0.0102 29 1 4.1207 -2.1323 -0.0003 30 1 2.0715 -3.2814 0.4451 31 1 0.5366 -2.3944 0.6051 32 1 1.9385 -4.1742 -3.0530 33 1 2.3524 -4.7360 -1.3460 34 1 0.6432 -5.3155 0.1203 35 1 -0.7360 -4.2076 0.3175 36 1 -1.7566 -7.2328 2.1523 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260950118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:55 Heat of formation + Delta-G solvation = 20.434672 kcal Electronic energy + Delta-G solvation = -15272.020019 eV Core-core repulsion = 12913.615705 eV Total energy + Delta-G solvation = -2358.404314 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.50454 -37.20530 -33.10453 -32.61097 -31.69036 -28.29928 -27.23865 -26.15464 -23.23843 -21.93646 -21.15865 -20.30346 -18.47304 -16.59621 -16.05920 -15.43856 -14.94334 -14.51512 -14.21779 -13.78919 -13.06805 -12.92206 -12.79275 -12.39036 -12.08710 -11.91445 -11.79760 -11.65910 -11.01750 -10.91267 -10.83704 -10.79504 -10.62299 -10.48431 -9.69022 -9.26225 -9.07541 -8.75522 -8.62270 -8.36732 -8.21549 -5.98280 -3.99713 1.50886 1.54091 3.33311 3.39536 3.42908 3.89976 4.45797 4.58347 4.95048 5.00669 5.11256 5.15531 5.36761 5.44100 5.55742 5.58504 5.71935 5.79999 5.83870 5.86127 5.93696 6.03515 6.17383 6.30639 6.36288 6.41698 6.46402 6.61752 6.66233 6.76121 6.88473 6.95017 7.14039 7.19740 7.70249 7.80676 8.01000 8.45861 9.06042 9.63733 11.12939 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.045414 B = 0.005020 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.404786 B = 5576.868423 C = 5729.709235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 C -0.124 4.124 4 C -0.131 4.131 5 C -0.128 4.128 6 C -0.114 4.114 7 C -0.065 4.065 8 C -0.049 4.049 9 C -0.161 4.161 10 H 0.090 0.910 11 C -0.184 4.184 12 C -0.115 4.115 13 H 0.090 0.910 14 C 0.049 3.951 15 C -0.515 4.515 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.019 0.981 35 H 0.022 0.978 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.942 13.591 -2.775 15.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.082 4.082 3 C -0.142 4.142 4 C -0.149 4.149 5 C -0.146 4.146 6 C -0.132 4.132 7 C -0.065 4.065 8 C -0.086 4.086 9 C -0.179 4.179 10 H 0.108 0.892 11 C -0.221 4.221 12 C -0.133 4.133 13 H 0.108 0.892 14 C 0.012 3.988 15 C -0.554 4.554 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.098 0.902 26 H 0.135 0.865 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.138 0.862 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.037 0.963 35 H 0.040 0.960 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.901 13.518 -2.599 15.872 hybrid contribution -0.483 -0.755 -0.250 0.930 sum 7.418 12.763 -2.849 15.034 Atomic orbital electron populations 1.20894 0.91185 1.03200 1.02526 1.19843 0.96208 0.92546 0.99642 1.20986 0.94221 0.97308 1.01640 1.21023 0.94309 0.97748 1.01809 1.21068 0.99489 0.92655 1.01425 1.21086 0.93820 0.98006 1.00245 1.19959 0.93619 0.95035 0.97910 1.20156 0.99742 0.92751 0.95956 1.22231 1.07710 0.91910 0.96072 0.89202 1.23065 0.98560 1.00578 0.99893 1.22828 0.91371 0.96982 1.02121 0.89170 1.18734 0.96163 0.93804 0.90061 1.21254 1.26655 1.14049 0.93412 0.92690 1.25007 0.96768 0.97707 0.94976 1.69956 1.44678 1.38960 1.00014 0.86611 0.80911 0.82495 0.78089 1.20719 1.21262 1.19900 0.91161 0.92041 0.90226 0.86527 0.86662 0.86568 0.86167 0.90925 0.90072 0.90381 0.89389 0.96309 0.95958 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 9.22 36.01 0.33 -1.23 16 2 C -0.08 -1.15 5.88 -104.62 -0.62 -1.77 16 3 C -0.12 -1.53 9.70 -39.58 -0.38 -1.91 16 4 C -0.13 -1.53 10.05 -39.58 -0.40 -1.93 16 5 C -0.13 -1.57 10.05 -39.58 -0.40 -1.96 16 6 C -0.11 -1.57 9.68 -39.58 -0.38 -1.96 16 7 C -0.07 -0.98 5.09 -104.62 -0.53 -1.52 16 8 C -0.05 -0.83 4.01 -27.88 -0.11 -0.94 16 9 C -0.16 -2.81 4.96 -90.62 -0.45 -3.26 16 10 H 0.09 1.49 8.03 -51.93 -0.42 1.07 16 11 C -0.18 -3.34 9.83 -26.69 -0.26 -3.60 16 12 C -0.11 -2.40 5.70 -90.58 -0.52 -2.91 16 13 H 0.09 1.88 8.00 -51.93 -0.42 1.47 16 14 C 0.05 1.26 4.34 -27.88 -0.12 1.13 16 15 C -0.52 -14.57 9.08 -34.44 -0.31 -14.89 16 16 H 0.05 1.52 7.68 -52.49 -0.40 1.12 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 19 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 25 H 0.08 1.13 6.13 -51.93 -0.32 0.81 16 26 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 27 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 28 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 29 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.07 1.27 7.79 -51.93 -0.40 0.87 16 31 H 0.08 1.45 6.47 -51.93 -0.34 1.11 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.09 1.62 7.92 -51.93 -0.41 1.21 16 34 H 0.02 0.51 7.88 -51.93 -0.41 0.10 16 35 H 0.02 0.60 7.60 -51.93 -0.39 0.21 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 299.58 15.07 4.51 4.51 Total: -1.00 -29.75 299.58 -9.62 -39.37 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -5.60 Total: 0.78 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: -4.25 Total: -35.24 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.74 Total: -26.10 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.75 -9.62 -39.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260950118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.808 kcal (2) G-P(sol) polarization free energy of solvation -29.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds