Wall clock time and date at job start Mon Mar 30 2020 03:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38256 * 119.99651 * 2 1 4 4 C 1.38222 * 119.99585 * 180.27329 * 3 2 1 5 5 C 1.38252 * 119.99890 * 359.74878 * 4 3 2 6 6 C 1.38218 * 120.00377 * 359.97235 * 5 4 3 7 7 C 1.38214 * 120.00239 * 179.74275 * 2 1 3 8 8 C 1.50701 * 119.99701 * 359.97438 * 7 2 1 9 9 C 1.52997 * 109.47212 * 84.72607 * 8 7 2 10 10 H 1.09003 * 115.54930 * 330.58408 * 9 8 7 11 11 C 1.53007 * 117.50172 * 116.24926 * 9 8 7 12 12 C 1.52998 * 117.50247 * 184.91177 * 9 8 7 13 13 H 1.08999 * 117.50263 * 145.02270 * 12 9 8 14 14 C 1.53007 * 117.49713 * 359.97438 * 12 9 8 15 15 C 1.50699 * 109.46860 * 174.99893 * 14 12 9 16 16 H 1.07992 * 120.00205 * 0.02562 * 15 14 12 17 17 C 1.37878 * 119.99372 * 180.02562 * 15 14 12 18 18 N 1.31513 * 120.00558 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99823 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47354 * 89.99570 * 19 17 15 21 21 H 1.48499 * 109.47271 * 210.00026 * 19 17 15 22 22 H 1.48507 * 109.46947 * 329.99766 * 19 17 15 23 23 H 1.09002 * 109.47248 * 270.25241 * 1 2 3 24 24 H 1.09000 * 109.46927 * 30.25572 * 1 2 3 25 25 H 1.08999 * 109.47307 * 150.25403 * 1 2 3 26 26 H 1.08004 * 120.00775 * 0.04060 * 3 2 1 27 27 H 1.08000 * 119.99418 * 179.76864 * 4 3 2 28 28 H 1.08003 * 119.99889 * 180.02562 * 5 4 3 29 29 H 1.07998 * 120.00148 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.47060 * 204.72662 * 8 7 2 31 31 H 1.09001 * 109.47380 * 324.72750 * 8 7 2 32 32 H 1.08996 * 117.50017 * 214.98378 * 11 9 8 33 33 H 1.08997 * 117.49263 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.47035 * 295.00264 * 14 12 9 35 35 H 1.08999 * 109.46641 * 54.99710 * 14 12 9 36 36 H 0.96998 * 120.00451 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0057 5 6 4.2717 0.0001 -0.0062 6 6 3.5807 -1.1970 -0.0003 7 6 2.1981 -1.1969 0.0054 8 6 1.4446 -2.5020 0.0118 9 6 1.0742 -2.8842 -1.4226 10 1 0.9249 -2.0497 -2.1078 11 6 1.6859 -4.1655 -1.9928 12 6 0.2017 -4.1253 -1.6202 13 1 -0.5215 -4.1076 -2.4356 14 6 -0.2333 -4.8897 -0.3682 15 6 -1.1784 -5.9967 -0.7586 16 1 -1.4421 -6.1409 -1.7958 17 6 -1.7064 -6.8253 0.2087 18 7 -1.3849 -6.6501 1.4718 19 14 -2.8773 -8.1980 -0.2752 20 1 -2.1026 -9.4330 -0.5576 21 1 -3.8275 -8.4532 0.8372 22 1 -3.6329 -7.7990 -1.4898 23 1 -0.3634 0.0045 1.0277 24 1 -0.3633 0.8877 -0.5178 25 1 -0.3634 -0.8922 -0.5099 26 1 1.6583 2.1328 0.0007 27 1 4.1203 2.1327 -0.0095 28 1 5.3517 0.0000 -0.0102 29 1 4.1207 -2.1323 -0.0003 30 1 2.0715 -3.2814 0.4451 31 1 0.5366 -2.3944 0.6051 32 1 1.9385 -4.1742 -3.0530 33 1 2.3524 -4.7360 -1.3460 34 1 0.6432 -5.3155 0.1203 35 1 -0.7360 -4.2076 0.3175 36 1 -1.7566 -7.2328 2.1523 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260950118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:55 Heat of formation + Delta-G solvation = 6.883003 kcal Electronic energy + Delta-G solvation = -15272.607663 eV Core-core repulsion = 12913.615705 eV Total energy + Delta-G solvation = -2358.991958 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.59496 -38.70264 -34.99317 -33.91684 -32.82515 -30.28697 -28.42014 -27.26829 -25.33994 -22.96672 -22.48480 -21.57245 -20.08152 -18.60817 -17.22163 -16.64096 -16.48644 -16.09623 -15.49014 -15.13793 -14.39554 -14.28288 -14.06556 -13.90588 -13.60654 -13.39204 -13.06642 -12.91918 -12.86750 -12.70203 -12.39777 -12.26994 -11.85770 -11.78346 -11.48313 -11.32398 -10.83322 -10.47887 -10.31327 -9.63135 -9.38057 -8.18586 -6.28901 0.50491 0.54241 1.40145 1.41405 1.52532 2.41556 2.89049 3.01259 3.15999 3.79017 3.96709 4.03884 4.12656 4.19842 4.25456 4.35851 4.48479 4.54982 4.63507 4.81405 4.83126 4.86467 4.92404 4.98590 5.03369 5.04160 5.26495 5.31341 5.35712 5.46601 5.56275 5.65290 5.67654 5.69384 5.85025 5.86922 6.20300 6.28856 6.86508 7.39685 8.93006 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.045414 B = 0.005020 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.404786 B = 5576.868423 C = 5729.709235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.096 4.096 3 C -0.126 4.126 4 C -0.127 4.127 5 C -0.130 4.130 6 C -0.127 4.127 7 C -0.087 4.087 8 C -0.042 4.042 9 C -0.134 4.134 10 H 0.107 0.893 11 C -0.170 4.170 12 C -0.143 4.143 13 H 0.091 0.909 14 C 0.061 3.939 15 C -0.538 4.538 16 H 0.058 0.942 17 C 0.001 3.999 18 N -0.934 5.934 19 Si 0.963 3.037 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.264 1.264 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.059 0.941 26 H 0.141 0.859 27 H 0.147 0.853 28 H 0.142 0.858 29 H 0.122 0.878 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.081 0.919 34 H -0.009 1.009 35 H -0.005 1.005 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.617 14.923 -3.990 17.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.096 4.096 3 C -0.144 4.144 4 C -0.145 4.145 5 C -0.147 4.147 6 C -0.145 4.145 7 C -0.087 4.087 8 C -0.080 4.080 9 C -0.152 4.152 10 H 0.125 0.875 11 C -0.207 4.207 12 C -0.161 4.161 13 H 0.109 0.891 14 C 0.024 3.976 15 C -0.576 4.576 16 H 0.076 0.924 17 C -0.197 4.197 18 N -0.574 5.574 19 Si 0.788 3.212 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.188 1.188 23 H 0.087 0.913 24 H 0.102 0.898 25 H 0.078 0.922 26 H 0.159 0.841 27 H 0.165 0.835 28 H 0.160 0.840 29 H 0.140 0.860 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.099 0.901 34 H 0.010 0.990 35 H 0.013 0.987 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.582 14.855 -3.825 17.577 hybrid contribution -0.641 -1.103 0.168 1.286 sum 7.941 13.752 -3.658 16.296 Atomic orbital electron populations 1.20877 0.91002 1.03243 1.02530 1.20008 0.96601 0.92895 1.00123 1.21303 0.94876 0.97495 1.00734 1.21445 0.94225 0.98860 0.99923 1.21392 1.00887 0.92097 1.00361 1.21228 0.93423 0.99143 1.00743 1.19826 0.94222 0.94243 1.00458 1.19994 0.98895 0.93907 0.95175 1.22238 1.04813 0.91450 0.96735 0.87483 1.23120 0.95850 1.00359 1.01360 1.22523 0.93259 0.99950 1.00405 0.89100 1.18471 0.94382 0.93179 0.91548 1.21694 1.27281 1.14953 0.93707 0.92387 1.25946 0.98528 1.00393 0.94831 1.70092 1.45927 1.40187 1.01201 0.85473 0.78581 0.79055 0.78098 1.19851 1.20701 1.18779 0.91267 0.89844 0.92238 0.84112 0.83527 0.84018 0.86048 0.92536 0.92063 0.87709 0.90065 0.99036 0.98701 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 9.22 71.24 0.66 -2.39 16 2 C -0.10 -2.59 5.88 -19.87 -0.12 -2.71 16 3 C -0.13 -2.78 9.70 22.27 0.22 -2.57 16 4 C -0.13 -2.53 10.05 22.27 0.22 -2.30 16 5 C -0.13 -2.82 10.05 22.27 0.22 -2.59 16 6 C -0.13 -3.41 9.68 22.27 0.22 -3.20 16 7 C -0.09 -2.63 5.09 -19.87 -0.10 -2.73 16 8 C -0.04 -1.50 4.01 29.85 0.12 -1.38 16 9 C -0.13 -4.73 4.96 -10.79 -0.05 -4.78 16 10 H 0.11 3.43 8.03 -2.39 -0.02 3.41 16 11 C -0.17 -6.11 9.83 30.62 0.30 -5.81 16 12 C -0.14 -6.12 5.70 -10.77 -0.06 -6.19 16 13 H 0.09 3.85 8.00 -2.39 -0.02 3.83 16 14 C 0.06 3.29 4.34 29.85 0.13 3.41 16 15 C -0.54 -31.27 9.08 25.60 0.23 -31.04 16 16 H 0.06 3.25 7.68 -2.91 -0.02 3.22 16 17 C 0.00 0.03 5.46 84.66 0.46 0.49 16 18 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 19 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 23 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.08 1.69 8.09 -2.39 -0.02 1.67 16 25 H 0.06 1.73 6.13 -2.39 -0.01 1.71 16 26 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 27 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 28 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 29 H 0.12 3.10 8.06 -2.91 -0.02 3.07 16 30 H 0.06 2.11 7.79 -2.39 -0.02 2.09 16 31 H 0.06 2.36 6.47 -2.39 -0.02 2.35 16 32 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.08 3.03 7.92 -2.39 -0.02 3.01 16 34 H -0.01 -0.51 7.88 -2.39 -0.02 -0.52 16 35 H -0.01 -0.30 7.60 -2.39 -0.02 -0.32 16 36 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -65.14 299.58 5.79 -59.34 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 1.03 Total: 14.77 kcal Atomic # 6 Polarization: -66.21 SS G_CDS: 2.45 Total: -63.77 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.28 Total: -57.22 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -65.14 5.79 -59.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260950118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.226 kcal (2) G-P(sol) polarization free energy of solvation -65.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds