Wall clock time and date at job start Mon Mar 30 2020 03:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38265 * 120.11447 * 2 1 4 4 C 1.37936 * 119.77064 * 180.14505 * 3 2 1 5 5 C 1.38918 * 120.54128 * 0.02562 * 4 3 2 6 6 C 1.37661 * 119.68814 * 359.75062 * 5 4 3 7 7 C 1.37934 * 120.11261 * 180.02562 * 2 1 3 8 8 C 1.50628 * 122.56035 * 180.75066 * 6 5 4 9 9 H 1.09002 * 109.25281 * 221.89908 * 8 6 5 10 10 C 1.50702 * 109.25031 * 102.47955 * 8 6 5 11 11 H 1.08008 * 119.99819 * 335.02641 * 10 8 6 12 12 C 1.37878 * 120.00341 * 155.03589 * 10 8 6 13 13 N 1.31508 * 120.00263 * 185.87644 * 12 10 8 14 14 Si 1.86798 * 119.99722 * 5.87074 * 12 10 8 15 15 H 1.48504 * 109.46963 * 84.83074 * 14 12 10 16 16 H 1.48499 * 109.47263 * 204.83021 * 14 12 10 17 17 H 1.48497 * 109.47412 * 324.83390 * 14 12 10 18 18 C 1.52736 * 110.59860 * 342.18970 * 8 6 5 19 19 C 1.53323 * 108.39861 * 51.07190 * 18 8 6 20 20 C 1.50628 * 117.74376 * 179.65221 * 5 4 3 21 21 H 1.09000 * 109.25669 * 282.46494 * 20 5 4 22 22 C 1.52998 * 109.26202 * 41.93921 * 20 5 4 23 23 H 1.08993 * 109.47638 * 89.99455 * 1 2 3 24 24 H 1.09001 * 109.47277 * 210.00007 * 1 2 3 25 25 H 1.09000 * 109.46848 * 329.99214 * 1 2 3 26 26 H 1.07993 * 120.11426 * 359.87968 * 3 2 1 27 27 H 1.07996 * 119.72781 * 179.97438 * 4 3 2 28 28 H 1.08007 * 119.72851 * 359.97438 * 7 2 1 29 29 H 0.96997 * 120.00018 * 180.02562 * 13 12 10 30 30 H 1.09000 * 109.67742 * 291.34207 * 18 8 6 31 31 H 1.08997 * 109.67126 * 170.79455 * 18 8 6 32 32 H 1.09006 * 109.68122 * 170.43141 * 19 18 8 33 33 H 1.09001 * 109.68379 * 49.87138 * 19 18 8 34 34 H 1.09003 * 109.46988 * 59.99765 * 22 20 5 35 35 H 1.09003 * 109.47495 * 179.97438 * 22 20 5 36 36 H 1.08991 * 109.47222 * 300.00194 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2007 1.1960 0.0000 4 6 3.5800 1.1877 -0.0030 5 6 4.2787 -0.0129 -0.0066 6 6 3.5881 -1.2037 -0.0020 7 6 2.1990 -1.1932 -0.0005 8 6 4.2795 -2.5419 0.0112 9 1 3.7677 -3.2176 -0.6740 10 6 4.2270 -3.1146 1.4042 11 1 4.1276 -2.4569 2.2551 12 6 4.3059 -4.4782 1.5924 13 7 4.1444 -4.9865 2.7944 14 14 4.6421 -5.6035 0.1398 15 1 6.1066 -5.6903 -0.0905 16 1 4.1053 -6.9578 0.4281 17 1 3.9819 -5.0572 -1.0729 18 6 5.7378 -2.3974 -0.4193 19 6 6.3813 -1.2851 0.4170 20 6 5.7836 0.0516 -0.0179 21 1 6.1257 0.2875 -1.0255 22 6 6.2490 1.1479 0.9425 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5140 26 1 1.6644 2.1334 -0.0020 27 1 4.1211 2.1223 -0.0034 28 1 1.6563 -2.1271 -0.0005 29 1 4.2003 -5.9458 2.9269 30 1 5.7842 -2.1356 -1.4763 31 1 6.2652 -3.3361 -0.2495 32 1 7.4586 -1.2770 0.2504 33 1 6.1740 -1.4535 1.4738 34 1 5.9007 0.9202 1.9500 35 1 7.3379 1.1972 0.9374 36 1 5.8400 2.1069 0.6248 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260962998.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:36 Heat of formation + Delta-G solvation = -4.658272 kcal Electronic energy + Delta-G solvation = -16253.240032 eV Core-core repulsion = 13893.747607 eV Total energy + Delta-G solvation = -2359.492425 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.59157 -36.14364 -33.83988 -31.70893 -31.22547 -29.20848 -26.88517 -26.12952 -23.56774 -22.27933 -21.23075 -20.29178 -18.23868 -16.49944 -15.63958 -14.99910 -14.82823 -14.10043 -13.63229 -13.28691 -13.07193 -12.97193 -12.72576 -12.46069 -12.19182 -11.65477 -11.58356 -11.40112 -11.18047 -11.12883 -10.96173 -10.46370 -10.35754 -10.23324 -9.94197 -9.44382 -9.20588 -9.12734 -8.53649 -7.93750 -7.62195 -6.08026 -4.06187 2.03127 2.16594 3.27262 3.35967 3.36246 4.40110 4.43284 5.17495 5.28125 5.30412 5.47164 5.52314 5.58144 5.63939 5.85287 5.91472 6.02517 6.04206 6.05924 6.16789 6.23095 6.26029 6.32033 6.47793 6.57165 6.62785 6.74510 6.78376 6.92630 6.99659 7.10289 7.18878 7.22147 7.35063 7.65895 7.72981 7.82026 8.52077 8.97749 9.53499 11.04851 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.022197 B = 0.010942 C = 0.008332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.132674 B = 2558.440346 C = 3359.536872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.100 4.100 3 C -0.144 4.144 4 C -0.123 4.123 5 C -0.088 4.088 6 C -0.017 4.017 7 C -0.112 4.112 8 C 0.035 3.965 9 H 0.046 0.954 10 C -0.495 4.495 11 H 0.074 0.926 12 C 0.073 3.927 13 N -0.899 5.899 14 Si 0.871 3.129 15 H -0.274 1.274 16 H -0.291 1.291 17 H -0.263 1.263 18 C -0.115 4.115 19 C -0.105 4.105 20 C -0.046 4.046 21 H 0.067 0.933 22 C -0.142 4.142 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.117 0.883 29 H 0.264 0.736 30 H 0.034 0.966 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.669 9.935 -6.738 12.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.100 4.100 3 C -0.163 4.163 4 C -0.141 4.141 5 C -0.088 4.088 6 C -0.017 4.017 7 C -0.130 4.130 8 C 0.016 3.984 9 H 0.064 0.936 10 C -0.533 4.533 11 H 0.092 0.908 12 C -0.129 4.129 13 N -0.537 5.537 14 Si 0.699 3.301 15 H -0.200 1.200 16 H -0.217 1.217 17 H -0.188 1.188 18 C -0.153 4.153 19 C -0.142 4.142 20 C -0.064 4.064 21 H 0.085 0.915 22 C -0.199 4.199 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.126 0.874 27 H 0.129 0.871 28 H 0.135 0.865 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.681 9.755 -6.615 11.806 hybrid contribution 0.171 -0.707 -0.575 0.927 sum -0.511 9.047 -7.190 11.568 Atomic orbital electron populations 1.20705 0.92138 1.02181 1.01428 1.19741 0.95370 0.93484 1.01411 1.20677 0.94105 0.96757 1.04716 1.21032 0.93966 0.97228 1.01891 1.19545 0.94927 0.92413 1.01931 1.19969 0.93163 0.95310 0.93258 1.21055 0.94111 0.97024 1.00780 1.18387 0.91379 0.90204 0.98420 0.93617 1.20788 1.50004 0.92017 0.90509 0.90837 1.24980 0.94630 0.97873 0.95397 1.69899 1.49816 1.12492 1.21452 0.87006 0.79112 0.80113 0.83918 1.20018 1.21713 1.18785 1.21808 0.98983 0.98008 0.96502 1.21495 0.97408 0.93055 1.02244 1.19948 0.91512 0.96312 0.98675 0.91463 1.21890 1.00240 0.97787 1.00023 0.92007 0.91766 0.92298 0.87367 0.87061 0.86475 0.92651 0.94741 0.92578 0.93438 0.90108 0.92389 0.93014 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 10.02 36.00 0.36 -1.14 16 2 C -0.10 -1.76 5.87 -104.73 -0.61 -2.37 16 3 C -0.14 -2.38 9.71 -39.68 -0.39 -2.77 16 4 C -0.12 -2.09 9.04 -39.44 -0.36 -2.45 16 5 C -0.09 -1.69 5.43 -104.62 -0.57 -2.26 16 6 C -0.02 -0.36 5.00 -104.62 -0.52 -0.89 16 7 C -0.11 -2.28 9.18 -39.44 -0.36 -2.64 16 8 C 0.03 0.81 1.74 -93.09 -0.16 0.65 16 9 H 0.05 1.10 5.77 -51.93 -0.30 0.80 16 10 C -0.50 -13.56 7.72 -34.44 -0.27 -13.82 16 11 H 0.07 2.24 8.05 -52.48 -0.42 1.82 16 12 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 13 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 14 Si 0.87 21.16 25.76 -169.99 -4.38 16.78 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.26 -6.12 6.15 56.52 0.35 -5.78 16 18 C -0.12 -2.43 5.09 -26.70 -0.14 -2.56 16 19 C -0.10 -2.00 5.20 -26.69 -0.14 -2.14 16 20 C -0.05 -0.79 2.77 -91.94 -0.25 -1.05 16 21 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 22 C -0.14 -2.08 8.68 37.16 0.32 -1.76 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 25 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 26 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 27 H 0.11 1.61 6.33 -52.49 -0.33 1.27 16 28 H 0.12 2.40 8.05 -52.48 -0.42 1.98 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.03 0.66 8.10 -51.93 -0.42 0.24 16 31 H 0.06 1.23 6.26 -51.93 -0.33 0.91 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.76 7.18 -51.93 -0.37 1.38 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.66 6.40 -51.93 -0.33 0.33 16 LS Contribution 280.39 15.07 4.23 4.23 Total: -1.00 -29.25 280.39 -8.05 -37.31 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.49 Total: 1.22 kcal Atomic # 6 Polarization: -30.06 SS G_CDS: -3.18 Total: -33.24 kcal Atomic # 7 Polarization: -27.07 SS G_CDS: 0.77 Total: -26.30 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.38 Total: 16.78 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.25 -8.05 -37.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260962998.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.651 kcal (2) G-P(sol) polarization free energy of solvation -29.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds