Wall clock time and date at job start Mon Mar 30 2020 03:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38265 * 120.11447 * 2 1 4 4 C 1.37936 * 119.77064 * 180.14505 * 3 2 1 5 5 C 1.38918 * 120.54128 * 0.02562 * 4 3 2 6 6 C 1.37661 * 119.68814 * 359.75062 * 5 4 3 7 7 C 1.37934 * 120.11261 * 180.02562 * 2 1 3 8 8 C 1.50628 * 122.56035 * 180.75066 * 6 5 4 9 9 H 1.09002 * 109.25281 * 221.89908 * 8 6 5 10 10 C 1.50702 * 109.25031 * 102.47955 * 8 6 5 11 11 H 1.08008 * 119.99819 * 335.02641 * 10 8 6 12 12 C 1.37878 * 120.00341 * 155.03589 * 10 8 6 13 13 N 1.31508 * 120.00263 * 185.87644 * 12 10 8 14 14 Si 1.86798 * 119.99722 * 5.87074 * 12 10 8 15 15 H 1.48504 * 109.46963 * 84.83074 * 14 12 10 16 16 H 1.48499 * 109.47263 * 204.83021 * 14 12 10 17 17 H 1.48497 * 109.47412 * 324.83390 * 14 12 10 18 18 C 1.52736 * 110.59860 * 342.18970 * 8 6 5 19 19 C 1.53323 * 108.39861 * 51.07190 * 18 8 6 20 20 C 1.50628 * 117.74376 * 179.65221 * 5 4 3 21 21 H 1.09000 * 109.25669 * 282.46494 * 20 5 4 22 22 C 1.52998 * 109.26202 * 41.93921 * 20 5 4 23 23 H 1.08993 * 109.47638 * 89.99455 * 1 2 3 24 24 H 1.09001 * 109.47277 * 210.00007 * 1 2 3 25 25 H 1.09000 * 109.46848 * 329.99214 * 1 2 3 26 26 H 1.07993 * 120.11426 * 359.87968 * 3 2 1 27 27 H 1.07996 * 119.72781 * 179.97438 * 4 3 2 28 28 H 1.08007 * 119.72851 * 359.97438 * 7 2 1 29 29 H 0.96997 * 120.00018 * 180.02562 * 13 12 10 30 30 H 1.09000 * 109.67742 * 291.34207 * 18 8 6 31 31 H 1.08997 * 109.67126 * 170.79455 * 18 8 6 32 32 H 1.09006 * 109.68122 * 170.43141 * 19 18 8 33 33 H 1.09001 * 109.68379 * 49.87138 * 19 18 8 34 34 H 1.09003 * 109.46988 * 59.99765 * 22 20 5 35 35 H 1.09003 * 109.47495 * 179.97438 * 22 20 5 36 36 H 1.08991 * 109.47222 * 300.00194 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2007 1.1960 0.0000 4 6 3.5800 1.1877 -0.0030 5 6 4.2787 -0.0129 -0.0066 6 6 3.5881 -1.2037 -0.0020 7 6 2.1990 -1.1932 -0.0005 8 6 4.2795 -2.5419 0.0112 9 1 3.7677 -3.2176 -0.6740 10 6 4.2270 -3.1146 1.4042 11 1 4.1276 -2.4569 2.2551 12 6 4.3059 -4.4782 1.5924 13 7 4.1444 -4.9865 2.7944 14 14 4.6421 -5.6035 0.1398 15 1 6.1066 -5.6903 -0.0905 16 1 4.1053 -6.9578 0.4281 17 1 3.9819 -5.0572 -1.0729 18 6 5.7378 -2.3974 -0.4193 19 6 6.3813 -1.2851 0.4170 20 6 5.7836 0.0516 -0.0179 21 1 6.1257 0.2875 -1.0255 22 6 6.2490 1.1479 0.9425 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5140 26 1 1.6644 2.1334 -0.0020 27 1 4.1211 2.1223 -0.0034 28 1 1.6563 -2.1271 -0.0005 29 1 4.2003 -5.9458 2.9269 30 1 5.7842 -2.1356 -1.4763 31 1 6.2652 -3.3361 -0.2495 32 1 7.4586 -1.2770 0.2504 33 1 6.1740 -1.4535 1.4738 34 1 5.9007 0.9202 1.9500 35 1 7.3379 1.1972 0.9374 36 1 5.8400 2.1069 0.6248 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260962998.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:35 Heat of formation + Delta-G solvation = -20.194769 kcal Electronic energy + Delta-G solvation = -16253.913745 eV Core-core repulsion = 13893.747607 eV Total energy + Delta-G solvation = -2360.166138 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.05487 -37.61235 -35.54889 -33.68050 -32.55604 -30.65197 -28.61928 -27.39638 -25.38008 -23.77187 -22.65888 -21.79954 -19.93513 -18.50119 -17.12656 -16.58913 -16.32349 -15.75908 -15.13534 -14.78499 -14.53572 -14.45632 -14.39278 -13.96930 -13.61482 -13.07619 -12.96357 -12.90097 -12.76762 -12.67534 -12.43131 -12.01750 -11.94736 -11.82153 -11.70798 -11.15215 -11.01869 -10.78142 -10.63254 -9.40758 -9.07225 -8.28420 -6.29966 0.62271 0.71663 1.31764 1.33240 1.42794 2.32912 2.99063 3.07177 3.91153 3.93260 4.13198 4.19106 4.25425 4.32435 4.54824 4.62459 4.65586 4.70101 4.75363 4.81941 4.86765 4.92653 5.05801 5.09468 5.13409 5.20405 5.26001 5.34718 5.40744 5.42832 5.56681 5.58150 5.71676 5.80223 5.88977 6.13121 6.29201 6.39214 6.74367 7.32621 8.88505 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.022197 B = 0.010942 C = 0.008332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.132674 B = 2558.440346 C = 3359.536872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.104 4.104 3 C -0.139 4.139 4 C -0.120 4.120 5 C -0.101 4.101 6 C -0.055 4.055 7 C -0.142 4.142 8 C 0.037 3.963 9 H 0.033 0.967 10 C -0.486 4.486 11 H 0.023 0.977 12 C 0.014 3.986 13 N -0.950 5.950 14 Si 0.934 3.066 15 H -0.261 1.261 16 H -0.290 1.290 17 H -0.247 1.247 18 C -0.115 4.115 19 C -0.102 4.102 20 C -0.045 4.045 21 H 0.092 0.908 22 C -0.137 4.137 23 H 0.080 0.920 24 H 0.055 0.945 25 H 0.082 0.918 26 H 0.147 0.853 27 H 0.146 0.854 28 H 0.097 0.903 29 H 0.265 0.735 30 H 0.060 0.940 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.035 0.965 35 H 0.071 0.929 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.308 12.490 -8.953 15.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.104 4.104 3 C -0.157 4.157 4 C -0.138 4.138 5 C -0.101 4.101 6 C -0.055 4.055 7 C -0.160 4.160 8 C 0.018 3.982 9 H 0.051 0.949 10 C -0.524 4.524 11 H 0.042 0.958 12 C -0.183 4.183 13 N -0.591 5.591 14 Si 0.758 3.242 15 H -0.186 1.186 16 H -0.217 1.217 17 H -0.171 1.171 18 C -0.153 4.153 19 C -0.140 4.140 20 C -0.063 4.063 21 H 0.110 0.890 22 C -0.194 4.194 23 H 0.099 0.901 24 H 0.074 0.926 25 H 0.101 0.899 26 H 0.164 0.836 27 H 0.163 0.837 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.318 12.329 -8.846 15.178 hybrid contribution -0.012 -1.383 0.176 1.394 sum -0.330 10.946 -8.670 13.967 Atomic orbital electron populations 1.20759 0.89644 1.02960 1.02885 1.20135 0.97337 0.92848 1.00065 1.21159 0.94282 0.97685 1.02550 1.21418 0.94495 0.97585 1.00307 1.19856 0.96294 0.92342 1.01589 1.19944 0.93816 0.95305 0.96417 1.21112 0.94173 0.97758 1.02936 1.18270 0.93325 0.91359 0.95248 0.94870 1.20901 1.48571 0.91484 0.91431 0.95842 1.25812 0.94718 0.99595 0.98173 1.70055 1.52205 1.12873 1.23967 0.85980 0.79730 0.77666 0.80801 1.18554 1.21683 1.17116 1.21750 0.96950 0.98309 0.98308 1.21449 0.99098 0.93962 0.99471 1.20012 0.90151 0.95669 1.00513 0.89037 1.21852 1.01638 0.97828 0.98064 0.90103 0.92601 0.89926 0.83571 0.83654 0.88460 0.92653 0.92181 0.93959 0.90749 0.93996 0.94594 0.91019 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.72 10.02 71.23 0.71 -2.01 16 2 C -0.10 -3.49 5.87 -19.93 -0.12 -3.61 16 3 C -0.14 -4.10 9.71 22.20 0.22 -3.88 16 4 C -0.12 -3.68 9.04 22.36 0.20 -3.48 16 5 C -0.10 -3.71 5.43 -19.86 -0.11 -3.82 16 6 C -0.05 -2.39 5.00 -19.86 -0.10 -2.49 16 7 C -0.14 -5.92 9.18 22.36 0.21 -5.71 16 8 C 0.04 1.76 1.74 -12.40 -0.02 1.74 16 9 H 0.03 1.64 5.77 -2.39 -0.01 1.63 16 10 C -0.49 -28.15 7.72 25.60 0.20 -27.95 16 11 H 0.02 1.54 8.05 -2.91 -0.02 1.52 16 12 C 0.01 0.80 5.47 84.66 0.46 1.26 16 13 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16 14 Si 0.93 44.82 25.76 68.60 1.77 46.58 16 15 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 16 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 17 H -0.25 -11.13 6.15 99.48 0.61 -10.52 16 18 C -0.12 -4.81 5.09 30.61 0.16 -4.66 16 19 C -0.10 -3.84 5.20 30.62 0.16 -3.69 16 20 C -0.05 -1.45 2.77 -11.65 -0.03 -1.48 16 21 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 22 C -0.14 -3.59 8.68 71.98 0.62 -2.96 16 23 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.05 1.51 8.09 -2.39 -0.02 1.50 16 25 H 0.08 1.73 8.09 -2.39 -0.02 1.71 16 26 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 27 H 0.15 3.41 6.33 -2.91 -0.02 3.40 16 28 H 0.10 4.27 8.05 -2.91 -0.02 4.24 16 29 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 30 H 0.06 2.18 8.10 -2.39 -0.02 2.17 16 31 H 0.04 1.84 6.26 -2.39 -0.01 1.82 16 32 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 33 H 0.04 1.88 7.18 -2.39 -0.02 1.86 16 34 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.08 1.61 6.40 -2.39 -0.02 1.59 16 Total: -1.00 -67.69 280.39 5.58 -62.11 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.95 Total: 14.03 kcal Atomic # 6 Polarization: -65.30 SS G_CDS: 2.56 Total: -62.74 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: 0.30 Total: -59.98 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.77 Total: 46.58 kcal Total: -67.69 5.58 -62.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260962998.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.915 kcal (2) G-P(sol) polarization free energy of solvation -67.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds