Wall clock time and date at job start Mon Mar 30 2020 03:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38233 * 119.99610 * 2 1 4 4 C 1.38242 * 119.99513 * 179.97438 * 3 2 1 5 5 C 1.38231 * 119.99858 * 0.02677 * 4 3 2 6 6 C 1.50705 * 119.99762 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47215 * 89.99511 * 6 5 4 8 8 H 1.09004 * 115.56044 * 29.31639 * 7 6 5 9 9 C 1.53001 * 117.49966 * 243.62110 * 7 6 5 10 10 C 1.52994 * 59.99971 * 252.50840 * 9 7 6 11 11 H 1.08996 * 117.50399 * 252.48490 * 10 9 7 12 12 C 1.53003 * 117.49490 * 107.48849 * 10 9 7 13 13 C 1.50703 * 109.47202 * 116.39426 * 12 10 9 14 14 H 1.08002 * 119.99685 * 359.97438 * 13 12 10 15 15 C 1.37877 * 120.00216 * 180.02562 * 13 12 10 16 16 N 1.31516 * 120.00069 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99806 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46845 * 90.00621 * 17 15 13 19 19 H 1.48503 * 109.47399 * 210.00111 * 17 15 13 20 20 H 1.48498 * 109.47295 * 330.00717 * 17 15 13 21 21 C 1.38234 * 120.00397 * 0.24854 * 5 4 3 22 22 C 1.38230 * 119.99813 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.47549 * 89.99385 * 1 2 3 24 24 H 1.08997 * 109.47043 * 209.99828 * 1 2 3 25 25 H 1.09005 * 109.46985 * 329.99136 * 1 2 3 26 26 H 1.07999 * 120.00799 * 0.02562 * 3 2 1 27 27 H 1.08001 * 119.99727 * 180.02562 * 4 3 2 28 28 H 1.09005 * 109.46969 * 329.99746 * 6 5 4 29 29 H 1.08994 * 109.47398 * 209.99913 * 6 5 4 30 30 H 1.09003 * 117.49220 * 145.02502 * 9 7 6 31 31 H 1.08997 * 117.50110 * 0.02562 * 9 7 6 32 32 H 1.08999 * 109.47344 * 356.39343 * 12 10 9 33 33 H 1.09001 * 109.47340 * 236.39314 * 12 10 9 34 34 H 0.97000 * 119.99667 * 179.97438 * 16 15 13 35 35 H 1.07999 * 120.00172 * 179.72834 * 21 5 4 36 36 H 1.08000 * 120.00350 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 0.0000 0.0005 7 6 6.2887 0.0001 1.4430 8 1 5.6371 -0.4813 2.1723 9 6 7.0927 1.2160 1.9080 10 6 7.7988 -0.1182 1.6584 11 1 8.1411 -0.6771 2.5293 12 6 8.6834 -0.2274 0.4148 13 6 10.1126 -0.4578 0.8335 14 1 10.3648 -0.5196 1.8818 15 6 11.0983 -0.5886 -0.1216 16 7 12.3456 -0.7891 0.2439 17 14 10.6621 -0.4809 -1.9348 18 1 10.7600 0.9310 -2.3844 19 1 11.6041 -1.3172 -2.7211 20 1 9.2753 -0.9707 -2.1402 21 6 3.5805 -1.1971 -0.0052 22 6 2.1982 -1.1971 -0.0005 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5140 26 1 1.6582 2.1325 0.0004 27 1 4.1205 2.1325 0.0010 28 1 6.1420 0.8900 -0.5134 29 1 6.1421 -0.8899 -0.5133 30 1 6.9700 1.5344 2.9432 31 1 7.2580 2.0160 1.1864 32 1 8.6176 0.6963 -0.1602 33 1 8.3456 -1.0624 -0.1992 34 1 13.0390 -0.8814 -0.4282 35 1 4.1205 -2.1324 -0.0097 36 1 1.6582 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260987706.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:04 Heat of formation + Delta-G solvation = 7.452104 kcal Electronic energy + Delta-G solvation = -15009.661351 eV Core-core repulsion = 12650.694071 eV Total energy + Delta-G solvation = -2358.967280 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.45883 -38.84745 -35.02609 -34.26442 -31.75961 -31.12047 -29.81684 -25.94761 -24.95283 -23.55890 -22.36009 -21.65951 -20.14278 -18.98621 -17.19703 -16.44614 -16.31475 -15.96559 -15.59384 -15.25029 -14.60227 -14.40487 -14.24630 -14.17341 -13.71634 -13.40511 -13.18454 -12.90420 -12.80602 -12.61152 -12.19364 -12.05554 -11.88974 -11.78546 -11.71516 -11.40021 -10.86471 -10.58372 -10.41701 -9.77821 -9.29801 -8.29304 -6.32674 0.47039 0.54934 1.34820 1.36861 1.48944 2.35737 2.86455 2.96969 3.09200 3.79288 3.94760 4.00031 4.10999 4.16286 4.21124 4.32616 4.43964 4.59216 4.66258 4.76217 4.83896 4.87233 4.91487 4.94865 4.98704 5.04636 5.16773 5.26657 5.33865 5.40909 5.42841 5.55859 5.58078 5.68114 5.74855 5.82417 6.19219 6.30296 6.74624 7.30952 8.87867 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.044047 B = 0.004910 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.537101 B = 5701.366692 C = 5954.601481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.103 4.103 3 C -0.127 4.127 4 C -0.122 4.122 5 C -0.089 4.089 6 C -0.048 4.048 7 C -0.132 4.132 8 H 0.105 0.895 9 C -0.170 4.170 10 C -0.144 4.144 11 H 0.081 0.919 12 C 0.024 3.976 13 C -0.528 4.528 14 H 0.029 0.971 15 C 0.003 3.997 16 N -0.953 5.953 17 Si 0.949 3.051 18 H -0.265 1.265 19 H -0.283 1.283 20 H -0.245 1.245 21 C -0.128 4.128 22 C -0.127 4.127 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.139 0.861 27 H 0.126 0.874 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.019 0.981 33 H 0.021 0.979 34 H 0.266 0.734 35 H 0.123 0.877 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.832 2.783 -2.532 25.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.103 4.103 3 C -0.145 4.145 4 C -0.140 4.140 5 C -0.089 4.089 6 C -0.085 4.085 7 C -0.150 4.150 8 H 0.123 0.877 9 C -0.207 4.207 10 C -0.163 4.163 11 H 0.099 0.901 12 C -0.013 4.013 13 C -0.566 4.566 14 H 0.047 0.953 15 C -0.194 4.194 16 N -0.594 5.594 17 Si 0.772 3.228 18 H -0.190 1.190 19 H -0.209 1.209 20 H -0.169 1.169 21 C -0.146 4.146 22 C -0.145 4.145 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.157 0.843 27 H 0.144 0.856 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.037 0.963 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.141 0.859 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -24.671 2.759 -2.591 24.960 hybrid contribution 0.915 -0.116 -0.376 0.996 sum -23.756 2.643 -2.967 24.086 Atomic orbital electron populations 1.20812 0.89338 1.03559 1.02977 1.20271 0.97527 0.92957 0.99551 1.21288 0.93816 0.98555 1.00799 1.21226 0.94784 0.97692 1.00294 1.19905 0.94980 0.93936 1.00124 1.20104 0.91080 1.02591 0.94732 1.22294 0.92874 1.02592 0.97283 0.87685 1.23161 1.03873 0.91368 1.02257 1.22294 0.92816 1.01197 0.99957 0.90115 1.19026 0.92506 0.96111 0.93617 1.21504 0.92972 1.48645 0.93493 0.95273 1.26026 0.94558 0.94218 1.04575 1.70074 1.01767 1.51730 1.35842 0.85671 0.79411 0.78965 0.78731 1.19045 1.20860 1.16873 1.21246 0.94896 0.97756 1.00662 1.21270 0.93757 0.98599 1.00879 0.90460 0.90801 0.90702 0.84297 0.85556 0.91171 0.91446 0.88251 0.88942 0.96303 0.96040 0.92503 0.85854 0.84456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 10.01 71.24 0.71 -0.67 16 2 C -0.10 -1.97 5.88 -19.87 -0.12 -2.09 16 3 C -0.13 -2.56 9.70 22.27 0.22 -2.34 16 4 C -0.12 -2.89 9.70 22.27 0.22 -2.67 16 5 C -0.09 -2.36 5.09 -19.87 -0.10 -2.46 16 6 C -0.05 -1.44 4.71 29.85 0.14 -1.30 16 7 C -0.13 -4.25 5.72 -10.79 -0.06 -4.31 16 8 H 0.11 3.14 8.07 -2.38 -0.02 3.13 16 9 C -0.17 -5.66 9.82 30.59 0.30 -5.36 16 10 C -0.14 -5.89 5.70 -10.80 -0.06 -5.95 16 11 H 0.08 3.50 8.00 -2.39 -0.02 3.49 16 12 C 0.02 1.18 3.40 29.85 0.10 1.28 16 13 C -0.53 -31.42 9.63 25.60 0.25 -31.18 16 14 H 0.03 1.91 7.92 -2.91 -0.02 1.89 16 15 C 0.00 0.15 5.47 84.65 0.46 0.62 16 16 N -0.95 -61.08 13.96 21.45 0.30 -60.78 16 17 Si 0.95 44.96 27.47 68.60 1.88 46.85 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 20 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 21 C -0.13 -3.11 9.70 22.27 0.22 -2.90 16 22 C -0.13 -2.63 9.70 22.27 0.22 -2.41 16 23 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.07 0.79 8.09 -2.39 -0.02 0.77 16 25 H 0.07 0.79 8.09 -2.38 -0.02 0.77 16 26 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 27 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 28 H 0.07 2.11 7.82 -2.38 -0.02 2.09 16 29 H 0.07 2.14 7.54 -2.39 -0.02 2.12 16 30 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 31 H 0.09 3.01 7.92 -2.39 -0.02 2.99 16 32 H 0.02 0.87 7.30 -2.39 -0.02 0.86 16 33 H 0.02 1.02 6.66 -2.39 -0.02 1.00 16 34 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 35 H 0.12 2.86 8.06 -2.91 -0.02 2.83 16 36 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -67.38 300.65 5.64 -61.73 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.97 Total: 13.93 kcal Atomic # 6 Polarization: -64.22 SS G_CDS: 2.49 Total: -61.73 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: 0.30 Total: -60.78 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.85 kcal Total: -67.38 5.64 -61.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260987706.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.185 kcal (2) G-P(sol) polarization free energy of solvation -67.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds