Wall clock time and date at job start Mon Mar 30 2020 03:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38255 * 120.00169 * 2 1 4 4 C 1.38215 * 120.00360 * 179.97438 * 3 2 1 5 5 C 1.38262 * 120.00103 * 0.02562 * 4 3 2 6 6 C 1.38212 * 119.99526 * 359.96078 * 5 4 3 7 7 C 1.50701 * 119.99926 * 179.97438 * 6 5 4 8 8 C 1.53785 * 113.69000 * 320.93825 * 7 6 5 9 9 C 1.53779 * 87.08093 * 139.98979 * 8 7 6 10 10 C 1.52999 * 113.61451 * 220.01770 * 9 8 7 11 11 C 1.50699 * 109.47130 * 272.49762 * 10 9 8 12 12 H 1.08007 * 119.99911 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00196 * 179.97438 * 11 10 9 14 14 N 1.31519 * 120.00138 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99889 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47602 * 89.99602 * 15 13 11 17 17 H 1.48506 * 109.47057 * 209.99846 * 15 13 11 18 18 H 1.48501 * 109.47194 * 329.99744 * 15 13 11 19 19 C 1.53781 * 113.61206 * 58.47361 * 7 6 5 20 20 C 1.38213 * 120.00417 * 180.21163 * 2 1 3 21 21 H 1.08999 * 109.47258 * 90.00088 * 1 2 3 22 22 H 1.09002 * 109.47277 * 210.00429 * 1 2 3 23 23 H 1.09002 * 109.47261 * 329.99639 * 1 2 3 24 24 H 1.08006 * 119.99752 * 359.97438 * 3 2 1 25 25 H 1.08005 * 120.00482 * 180.02562 * 4 3 2 26 26 H 1.07991 * 120.00156 * 179.97438 * 5 4 3 27 27 H 1.09002 * 112.85178 * 189.66667 * 7 6 5 28 28 H 1.09003 * 113.60734 * 254.54099 * 8 7 6 29 29 H 1.08996 * 113.61146 * 25.43597 * 8 7 6 30 30 H 1.09005 * 113.69135 * 89.12376 * 9 8 7 31 31 H 1.09003 * 109.47100 * 32.49589 * 10 9 8 32 32 H 1.08995 * 109.47213 * 152.50009 * 10 9 8 33 33 H 0.97001 * 120.00002 * 179.97438 * 14 13 11 34 34 H 1.09005 * 113.61302 * 334.48043 * 19 7 6 35 35 H 1.08996 * 113.61527 * 105.30207 * 19 7 6 36 36 H 1.08000 * 119.99736 * 0.04076 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0008 7 6 4.3341 -2.5021 0.0002 8 6 5.5895 -2.4904 -0.8879 9 6 6.2858 -3.2963 0.2213 10 6 7.7340 -2.8706 0.4713 11 6 8.6481 -3.6308 -0.4547 12 1 8.2372 -4.3465 -1.1515 13 6 10.0088 -3.4129 -0.4124 14 7 10.8066 -4.0767 -1.2201 15 14 10.7194 -2.1756 0.7933 16 1 11.0398 -2.8586 2.0724 17 1 11.9572 -1.5846 0.2242 18 1 9.7262 -1.0999 1.0418 19 6 5.2809 -2.6672 1.2007 20 6 2.1981 -1.1969 -0.0044 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3634 0.8900 0.5139 24 1 1.6582 2.1327 -0.0004 25 1 4.1204 2.1327 0.0010 26 1 5.3516 0.0000 0.0005 27 1 3.6881 -3.3637 -0.1681 28 1 5.4700 -3.0429 -1.8199 29 1 6.0108 -1.4960 -1.0353 30 1 6.1743 -4.3754 0.1145 31 1 7.8356 -1.8014 0.2850 32 1 8.0028 -3.0865 1.5052 33 1 11.7639 -3.9231 -1.1906 34 1 5.6179 -1.7211 1.6244 35 1 4.9118 -3.3615 1.9556 36 1 1.6581 -2.1322 -0.0085 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260996402.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:27 Heat of formation + Delta-G solvation = 20.582127 kcal Electronic energy + Delta-G solvation = -15261.027657 eV Core-core repulsion = 12902.629738 eV Total energy + Delta-G solvation = -2358.397920 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.88841 -37.86603 -33.12412 -32.46275 -31.25794 -29.10552 -26.88812 -25.11057 -24.61837 -22.22870 -21.82005 -19.59675 -18.52331 -16.62682 -16.47889 -15.49178 -14.86943 -14.50620 -14.14342 -13.85657 -13.54794 -13.03311 -12.78752 -12.52170 -12.35073 -12.15575 -11.89296 -11.67027 -11.50397 -11.07808 -10.98507 -10.82082 -10.43989 -10.13549 -9.70593 -9.57046 -9.12645 -8.99863 -8.67277 -8.49203 -8.39169 -6.00443 -3.97341 1.45094 1.48427 3.32769 3.40168 3.43773 3.82413 4.48387 4.78263 4.84499 5.00329 5.19783 5.24335 5.27658 5.31485 5.34720 5.45737 5.47087 5.58591 5.63724 5.71766 5.74690 6.08772 6.18261 6.22335 6.29082 6.32604 6.51654 6.61739 6.62290 6.65668 6.79193 6.92791 7.01774 7.12924 7.31216 7.51454 7.84698 8.59344 9.05501 9.62712 11.13274 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.046493 B = 0.005214 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.096453 B = 5369.256794 C = 5673.811368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.091 4.091 3 C -0.134 4.134 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.053 4.053 7 C -0.084 4.084 8 C -0.117 4.117 9 C -0.087 4.087 10 C -0.005 4.005 11 C -0.514 4.514 12 H 0.071 0.929 13 C 0.064 3.936 14 N -0.906 5.906 15 Si 0.878 3.122 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.266 1.266 19 C -0.131 4.131 20 C -0.122 4.122 21 H 0.067 0.933 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.116 0.884 25 H 0.119 0.881 26 H 0.126 0.874 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.016 0.984 32 H 0.012 0.988 33 H 0.262 0.738 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.259 8.810 3.477 20.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 C -0.152 4.152 4 C -0.133 4.133 5 C -0.138 4.138 6 C -0.053 4.053 7 C -0.102 4.102 8 C -0.154 4.154 9 C -0.106 4.106 10 C -0.043 4.043 11 C -0.552 4.552 12 H 0.089 0.911 13 C -0.136 4.136 14 N -0.545 5.545 15 Si 0.706 3.294 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.191 1.191 19 C -0.168 4.168 20 C -0.140 4.140 21 H 0.086 0.914 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.134 0.866 25 H 0.137 0.863 26 H 0.144 0.856 27 H 0.109 0.891 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.034 0.966 32 H 0.030 0.970 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.074 8.787 3.427 20.387 hybrid contribution 0.569 0.622 0.542 1.002 sum -17.505 9.408 3.969 20.266 Atomic orbital electron populations 1.20760 0.91580 1.02447 1.02064 1.19858 0.95747 0.93290 1.00214 1.20937 0.94287 0.97194 1.02791 1.21117 0.94210 0.97967 1.00037 1.21134 1.00454 0.91873 1.00341 1.19910 0.93241 0.95150 0.96998 1.21652 0.95235 0.93833 0.99489 1.23025 0.93878 1.01085 0.97427 1.22384 0.95471 0.98853 0.93876 1.19555 0.91656 0.96457 0.96587 1.21160 0.90947 1.23218 1.19902 0.91076 1.25041 0.97214 0.95813 0.95547 1.69922 1.03943 1.42165 1.38503 0.86800 0.78592 0.82379 0.81626 1.20356 1.21481 1.19070 1.23139 0.96779 1.01115 0.95777 1.20933 0.93692 0.97307 1.02094 0.91422 0.91729 0.91838 0.86637 0.86314 0.85648 0.89126 0.91937 0.90141 0.89970 0.96599 0.96995 0.92846 0.90492 0.92223 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 36.00 0.36 -0.60 16 2 C -0.09 -1.06 5.88 -104.63 -0.62 -1.68 16 3 C -0.13 -1.56 9.70 -39.58 -0.38 -1.94 16 4 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 5 C -0.12 -1.72 8.54 -39.58 -0.34 -2.06 16 6 C -0.05 -0.76 5.29 -104.62 -0.55 -1.31 16 7 C -0.08 -1.26 3.98 -90.96 -0.36 -1.63 16 8 C -0.12 -2.07 7.01 -25.92 -0.18 -2.25 16 9 C -0.09 -1.72 3.59 -89.81 -0.32 -2.04 16 10 C -0.01 -0.13 3.88 -27.88 -0.11 -0.24 16 11 C -0.51 -14.72 9.65 -34.44 -0.33 -15.05 16 12 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 13 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 14 N -0.91 -28.23 13.96 55.43 0.77 -27.45 16 15 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 19 C -0.13 -2.14 7.10 -25.92 -0.18 -2.32 16 20 C -0.12 -1.57 9.37 -39.58 -0.37 -1.94 16 21 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 23 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 24 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 25 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 26 H 0.13 1.85 6.73 -52.49 -0.35 1.49 16 27 H 0.09 1.25 8.09 -51.93 -0.42 0.84 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.08 1.45 6.15 -51.93 -0.32 1.13 16 30 H 0.08 1.65 8.12 -51.93 -0.42 1.23 16 31 H 0.02 0.38 6.90 -51.93 -0.36 0.02 16 32 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.08 1.27 7.60 -51.93 -0.39 0.87 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.12 1.32 8.05 -52.49 -0.42 0.90 16 LS Contribution 293.92 15.07 4.43 4.43 Total: -1.00 -30.73 293.92 -8.98 -39.70 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.62 Total: -0.86 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: -3.89 Total: -33.10 kcal Atomic # 7 Polarization: -28.23 SS G_CDS: 0.77 Total: -27.45 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.73 -8.98 -39.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260996402.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.285 kcal (2) G-P(sol) polarization free energy of solvation -30.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds