Wall clock time and date at job start Mon Mar 30 2020 03:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38255 * 120.00169 * 2 1 4 4 C 1.38215 * 120.00360 * 179.97438 * 3 2 1 5 5 C 1.38262 * 120.00103 * 0.02562 * 4 3 2 6 6 C 1.38212 * 119.99526 * 359.96078 * 5 4 3 7 7 C 1.50701 * 119.99926 * 179.97438 * 6 5 4 8 8 C 1.53785 * 113.69000 * 320.93825 * 7 6 5 9 9 C 1.53779 * 87.08093 * 139.98979 * 8 7 6 10 10 C 1.52999 * 113.61451 * 220.01770 * 9 8 7 11 11 C 1.50699 * 109.47130 * 272.49762 * 10 9 8 12 12 H 1.08007 * 119.99911 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00196 * 179.97438 * 11 10 9 14 14 N 1.31519 * 120.00138 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99889 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47602 * 89.99602 * 15 13 11 17 17 H 1.48506 * 109.47057 * 209.99846 * 15 13 11 18 18 H 1.48501 * 109.47194 * 329.99744 * 15 13 11 19 19 C 1.53781 * 113.61206 * 58.47361 * 7 6 5 20 20 C 1.38213 * 120.00417 * 180.21163 * 2 1 3 21 21 H 1.08999 * 109.47258 * 90.00088 * 1 2 3 22 22 H 1.09002 * 109.47277 * 210.00429 * 1 2 3 23 23 H 1.09002 * 109.47261 * 329.99639 * 1 2 3 24 24 H 1.08006 * 119.99752 * 359.97438 * 3 2 1 25 25 H 1.08005 * 120.00482 * 180.02562 * 4 3 2 26 26 H 1.07991 * 120.00156 * 179.97438 * 5 4 3 27 27 H 1.09002 * 112.85178 * 189.66667 * 7 6 5 28 28 H 1.09003 * 113.60734 * 254.54099 * 8 7 6 29 29 H 1.08996 * 113.61146 * 25.43597 * 8 7 6 30 30 H 1.09005 * 113.69135 * 89.12376 * 9 8 7 31 31 H 1.09003 * 109.47100 * 32.49589 * 10 9 8 32 32 H 1.08995 * 109.47213 * 152.50009 * 10 9 8 33 33 H 0.97001 * 120.00002 * 179.97438 * 14 13 11 34 34 H 1.09005 * 113.61302 * 334.48043 * 19 7 6 35 35 H 1.08996 * 113.61527 * 105.30207 * 19 7 6 36 36 H 1.08000 * 119.99736 * 0.04076 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0008 7 6 4.3341 -2.5021 0.0002 8 6 5.5895 -2.4904 -0.8879 9 6 6.2858 -3.2963 0.2213 10 6 7.7340 -2.8706 0.4713 11 6 8.6481 -3.6308 -0.4547 12 1 8.2372 -4.3465 -1.1515 13 6 10.0088 -3.4129 -0.4124 14 7 10.8066 -4.0767 -1.2201 15 14 10.7194 -2.1756 0.7933 16 1 11.0398 -2.8586 2.0724 17 1 11.9572 -1.5846 0.2242 18 1 9.7262 -1.0999 1.0418 19 6 5.2809 -2.6672 1.2007 20 6 2.1981 -1.1969 -0.0044 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3634 0.8900 0.5139 24 1 1.6582 2.1327 -0.0004 25 1 4.1204 2.1327 0.0010 26 1 5.3516 0.0000 0.0005 27 1 3.6881 -3.3637 -0.1681 28 1 5.4700 -3.0429 -1.8199 29 1 6.0108 -1.4960 -1.0353 30 1 6.1743 -4.3754 0.1145 31 1 7.8356 -1.8014 0.2850 32 1 8.0028 -3.0865 1.5052 33 1 11.7639 -3.9231 -1.1906 34 1 5.6179 -1.7211 1.6244 35 1 4.9118 -3.3615 1.9556 36 1 1.6581 -2.1322 -0.0085 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260996402.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:27 Heat of formation + Delta-G solvation = 5.250914 kcal Electronic energy + Delta-G solvation = -15261.692468 eV Core-core repulsion = 12902.629738 eV Total energy + Delta-G solvation = -2359.062731 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.02489 -39.06891 -35.07994 -33.58587 -32.52093 -30.80813 -27.70677 -26.51888 -26.19753 -23.70342 -22.88932 -21.01402 -19.86434 -18.79683 -17.50479 -16.67598 -16.30129 -15.79749 -15.70289 -14.95047 -14.66379 -14.39429 -14.25214 -13.92834 -13.54327 -13.33675 -13.23134 -13.06505 -12.80704 -12.67228 -12.25430 -12.02101 -11.88441 -11.74802 -11.53551 -11.23927 -10.97208 -10.72729 -10.61985 -9.61922 -9.37962 -8.28127 -6.30878 0.48541 0.53544 1.34809 1.36414 1.48535 2.36439 2.85507 3.07029 3.74024 3.81383 3.95355 4.07378 4.11274 4.17689 4.20016 4.32254 4.56564 4.61044 4.78503 4.82543 4.87885 4.92606 4.96317 5.02108 5.06730 5.08483 5.16063 5.27301 5.31731 5.36743 5.52980 5.64040 5.67190 5.72095 5.75205 5.91744 6.19786 6.31567 6.76881 7.33177 8.89008 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.046493 B = 0.005214 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.096453 B = 5369.256794 C = 5673.811368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.094 4.094 3 C -0.135 4.135 4 C -0.122 4.122 5 C -0.141 4.141 6 C -0.070 4.070 7 C -0.064 4.064 8 C -0.121 4.121 9 C -0.100 4.100 10 C -0.001 4.001 11 C -0.524 4.524 12 H 0.030 0.970 13 C 0.002 3.998 14 N -0.954 5.954 15 Si 0.949 3.051 16 H -0.266 1.266 17 H -0.284 1.284 18 H -0.248 1.248 19 C -0.118 4.118 20 C -0.130 4.130 21 H 0.077 0.923 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.141 0.859 25 H 0.135 0.865 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.017 0.983 32 H 0.015 0.985 33 H 0.265 0.735 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.391 10.688 4.966 23.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.094 4.094 3 C -0.153 4.153 4 C -0.140 4.140 5 C -0.159 4.159 6 C -0.070 4.070 7 C -0.082 4.082 8 C -0.158 4.158 9 C -0.118 4.118 10 C -0.038 4.038 11 C -0.562 4.562 12 H 0.048 0.952 13 C -0.195 4.195 14 N -0.595 5.595 15 Si 0.773 3.227 16 H -0.191 1.191 17 H -0.210 1.210 18 H -0.172 1.172 19 C -0.155 4.155 20 C -0.148 4.148 21 H 0.095 0.905 22 H 0.091 0.909 23 H 0.096 0.904 24 H 0.159 0.841 25 H 0.153 0.847 26 H 0.130 0.870 27 H 0.124 0.876 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.036 0.964 32 H 0.034 0.966 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -20.230 10.664 4.921 23.392 hybrid contribution 1.187 0.002 -0.007 1.187 sum -19.043 10.666 4.914 22.373 Atomic orbital electron populations 1.20817 0.89253 1.03627 1.03008 1.20260 0.97517 0.92819 0.98777 1.21302 0.94021 0.98442 1.01562 1.21361 0.94997 0.97997 0.99635 1.21164 1.00035 0.92851 1.01843 1.19857 0.94033 0.94430 0.98730 1.21475 0.94302 0.95231 0.97205 1.23006 0.95598 1.00126 0.97064 1.22349 0.93897 0.98679 0.96885 1.19494 0.93312 0.95682 0.95335 1.21499 0.92044 1.22771 1.19888 0.95159 1.26027 0.97673 0.98101 0.97658 1.70079 1.04449 1.44293 1.40714 0.85668 0.78020 0.79961 0.79060 1.19148 1.20994 1.17152 1.23031 0.95514 1.00954 0.96009 1.21156 0.93113 0.98657 1.01855 0.90468 0.90898 0.90413 0.84087 0.84729 0.86991 0.87635 0.92736 0.90811 0.91028 0.96431 0.96630 0.92612 0.90480 0.90480 0.84949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 10.01 71.23 0.71 -0.78 16 2 C -0.09 -1.90 5.88 -19.87 -0.12 -2.02 16 3 C -0.14 -2.75 9.70 22.27 0.22 -2.53 16 4 C -0.12 -2.83 10.05 22.27 0.22 -2.60 16 5 C -0.14 -3.89 8.54 22.27 0.19 -3.70 16 6 C -0.07 -1.92 5.29 -19.87 -0.11 -2.02 16 7 C -0.06 -1.85 3.98 -11.01 -0.04 -1.90 16 8 C -0.12 -4.32 7.01 31.12 0.22 -4.10 16 9 C -0.10 -3.95 3.59 -10.27 -0.04 -3.98 16 10 C 0.00 -0.05 3.88 29.85 0.12 0.07 16 11 C -0.52 -30.97 9.65 25.60 0.25 -30.73 16 12 H 0.03 1.97 7.99 -2.91 -0.02 1.94 16 13 C 0.00 0.09 5.47 84.65 0.46 0.55 16 14 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 15 Si 0.95 45.32 27.47 68.60 1.88 47.21 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 17 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 18 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 19 C -0.12 -3.69 7.10 31.12 0.22 -3.47 16 20 C -0.13 -3.02 9.37 22.27 0.21 -2.81 16 21 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16 23 H 0.08 0.84 8.09 -2.39 -0.02 0.82 16 24 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 25 H 0.13 2.57 8.06 -2.91 -0.02 2.54 16 26 H 0.11 3.30 6.73 -2.92 -0.02 3.28 16 27 H 0.11 2.73 8.09 -2.39 -0.02 2.71 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.07 2.72 6.15 -2.39 -0.01 2.71 16 30 H 0.07 2.95 8.12 -2.38 -0.02 2.93 16 31 H 0.02 0.83 6.90 -2.39 -0.02 0.81 16 32 H 0.02 0.73 7.57 -2.39 -0.02 0.71 16 33 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 34 H 0.08 2.42 7.60 -2.38 -0.02 2.41 16 35 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.13 2.59 8.05 -2.91 -0.02 2.57 16 Total: -1.00 -67.40 293.92 5.68 -61.72 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.98 Total: 12.00 kcal Atomic # 6 Polarization: -62.54 SS G_CDS: 2.51 Total: -60.02 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: 0.30 Total: -60.91 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.21 kcal Total: -67.40 5.68 -61.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260996402.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.971 kcal (2) G-P(sol) polarization free energy of solvation -67.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds