Wall clock time and date at job start Mon Mar 30 2020 03:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38267 * 120.10938 * 2 1 4 4 C 1.37938 * 119.76446 * 179.85614 * 3 2 1 5 5 C 1.38909 * 120.55001 * 0.02562 * 4 3 2 6 6 C 1.37664 * 119.68109 * 0.18481 * 5 4 3 7 7 C 1.37932 * 120.11647 * 179.97438 * 2 1 3 8 8 C 1.50638 * 122.57104 * 179.65074 * 6 5 4 9 9 H 1.08997 * 109.25074 * 257.23395 * 8 6 5 10 10 C 1.53002 * 109.25286 * 137.80254 * 8 6 5 11 11 C 1.52735 * 110.58967 * 17.51792 * 8 6 5 12 12 C 1.53329 * 108.38483 * 308.96825 * 11 8 6 13 13 C 1.50628 * 117.74822 * 180.23261 * 5 4 3 14 14 H 1.08991 * 109.22814 * 77.28340 * 13 5 4 15 15 C 1.50702 * 109.25204 * 317.83107 * 13 5 4 16 16 H 1.08000 * 120.00169 * 323.84808 * 15 13 5 17 17 C 1.37877 * 119.99711 * 143.84417 * 15 13 5 18 18 N 1.31513 * 120.00307 * 354.26431 * 17 15 13 19 19 Si 1.86806 * 119.99927 * 174.53196 * 17 15 13 20 20 H 1.48500 * 109.47034 * 179.72542 * 19 17 15 21 21 H 1.48502 * 109.47353 * 299.72901 * 19 17 15 22 22 H 1.48504 * 109.46824 * 59.72868 * 19 17 15 23 23 H 1.08997 * 109.47071 * 89.99831 * 1 2 3 24 24 H 1.09001 * 109.47039 * 209.99988 * 1 2 3 25 25 H 1.08998 * 109.47265 * 330.00360 * 1 2 3 26 26 H 1.07992 * 120.11766 * 359.87577 * 3 2 1 27 27 H 1.08005 * 119.72386 * 180.02562 * 4 3 2 28 28 H 1.08004 * 119.71956 * 0.04479 * 7 2 1 29 29 H 1.08994 * 109.46998 * 298.89834 * 10 8 6 30 30 H 1.09001 * 109.46674 * 58.90150 * 10 8 6 31 31 H 1.09000 * 109.46754 * 178.89120 * 10 8 6 32 32 H 1.09000 * 109.67781 * 189.24761 * 11 8 6 33 33 H 1.08998 * 109.67999 * 68.69523 * 11 8 6 34 34 H 1.08992 * 109.68611 * 310.19954 * 12 11 8 35 35 H 1.09005 * 109.68390 * 189.63878 * 12 11 8 36 36 H 0.97004 * 120.00277 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2006 1.1961 0.0000 4 6 3.5800 1.1878 0.0030 5 6 4.2788 -0.0127 0.0055 6 6 3.5882 -1.2035 0.0011 7 6 2.1991 -1.1931 0.0005 8 6 4.2794 -2.5419 -0.0043 9 1 4.2420 -2.9617 -1.0095 10 6 3.5605 -3.4850 0.9625 11 6 5.7375 -2.3951 0.4262 12 6 6.3810 -1.2867 -0.4154 13 6 5.7837 0.0519 0.0141 14 1 6.1269 0.2924 1.0203 15 6 6.2404 1.1279 -0.9371 16 1 5.7029 1.2979 -1.8583 17 6 7.3442 1.8953 -0.6312 18 7 7.9310 1.7664 0.5387 19 14 8.0019 3.1234 -1.8757 20 1 9.1819 3.8220 -1.3057 21 1 8.4008 2.4078 -3.1142 22 1 6.9457 4.1169 -2.1963 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6644 2.1335 -0.0020 27 1 4.1211 2.1225 0.0034 28 1 1.6564 -2.1269 0.0002 29 1 3.6040 -3.0737 1.9710 30 1 2.5193 -3.5923 0.6584 31 1 4.0460 -4.4607 0.9466 32 1 6.2652 -3.3345 0.2613 33 1 5.7834 -2.1281 1.4820 34 1 6.1730 -1.4597 -1.4712 35 1 7.4583 -1.2782 -0.2495 36 1 8.7074 2.3066 0.7541 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260998253.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:39 Heat of formation + Delta-G solvation = -10.139204 kcal Electronic energy + Delta-G solvation = -16097.447517 eV Core-core repulsion = 13737.717420 eV Total energy + Delta-G solvation = -2359.730096 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.45335 -35.95731 -33.91136 -31.81075 -30.79251 -28.99788 -27.18340 -25.67477 -23.62054 -22.18605 -21.05005 -20.17373 -18.22377 -16.39832 -15.39173 -14.89262 -14.67621 -14.33988 -13.41846 -13.24173 -13.19405 -12.88488 -12.54255 -12.12078 -12.03323 -11.70217 -11.53239 -11.40767 -11.12262 -10.91072 -10.71005 -10.56330 -10.39047 -10.19511 -9.99192 -9.58604 -9.00573 -8.90670 -8.49668 -7.92410 -7.45182 -6.04049 -4.06579 2.18420 2.24526 3.30636 3.35614 3.38787 4.39998 4.59027 5.22184 5.26311 5.33385 5.48905 5.54800 5.63520 5.73789 5.87850 5.90564 6.03190 6.07194 6.12906 6.15302 6.29177 6.33028 6.51447 6.52815 6.66433 6.75111 6.86924 6.89157 7.07517 7.16865 7.27076 7.33772 7.53549 7.73843 7.84132 7.91447 7.99436 8.41744 9.01860 9.55813 11.04162 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.025371 B = 0.009221 C = 0.007176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.374164 B = 3035.661149 C = 3900.834758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.120 4.120 3 C -0.135 4.135 4 C -0.098 4.098 5 C -0.034 4.034 6 C -0.091 4.091 7 C -0.129 4.129 8 C -0.046 4.046 9 H 0.070 0.930 10 C -0.142 4.142 11 C -0.116 4.116 12 C -0.101 4.101 13 C 0.062 3.938 14 H 0.074 0.926 15 C -0.506 4.506 16 H 0.055 0.945 17 C 0.065 3.935 18 N -0.893 5.893 19 Si 0.889 3.111 20 H -0.287 1.287 21 H -0.276 1.276 22 H -0.277 1.277 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.107 0.893 27 H 0.128 0.872 28 H 0.108 0.892 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.279 -6.042 0.218 11.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.120 4.120 3 C -0.153 4.153 4 C -0.116 4.116 5 C -0.034 4.034 6 C -0.091 4.091 7 C -0.147 4.147 8 C -0.064 4.064 9 H 0.088 0.912 10 C -0.200 4.200 11 C -0.154 4.154 12 C -0.139 4.139 13 C 0.044 3.956 14 H 0.092 0.908 15 C -0.544 4.544 16 H 0.073 0.927 17 C -0.137 4.137 18 N -0.531 5.531 19 Si 0.717 3.283 20 H -0.213 1.213 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.125 0.875 27 H 0.145 0.855 28 H 0.126 0.874 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.126 -5.962 0.337 10.906 hybrid contribution 0.398 0.770 -0.718 1.125 sum -8.728 -5.192 -0.381 10.163 Atomic orbital electron populations 1.20649 0.92436 1.01643 1.01267 1.19580 0.94974 0.93567 1.03872 1.20908 0.94678 0.96601 1.03135 1.21365 0.92826 0.99275 0.98129 1.20505 0.98570 0.90968 0.93390 1.19609 0.92813 0.94540 1.02120 1.20863 0.93770 0.96624 1.03416 1.19926 0.95232 0.92356 0.98866 0.91225 1.21906 0.99751 0.98584 0.99712 1.21704 0.94045 0.99037 1.00612 1.21656 0.99539 0.94995 0.97752 1.17971 0.85168 0.92826 0.99656 0.90817 1.21004 1.11829 1.16667 1.04937 0.92711 1.24972 0.96888 0.96777 0.95041 1.69897 1.21734 1.41116 1.20332 0.86698 0.78491 0.81352 0.81742 1.21303 1.20204 1.20210 0.92229 0.92485 0.92354 0.87457 0.85457 0.87403 0.92729 0.92960 0.93090 0.93255 0.92326 0.93620 0.92527 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 10.02 36.01 0.36 -0.98 16 2 C -0.12 -2.05 5.87 -104.72 -0.61 -2.66 16 3 C -0.14 -2.51 9.71 -39.68 -0.39 -2.89 16 4 C -0.10 -2.12 9.04 -39.44 -0.36 -2.48 16 5 C -0.03 -0.77 5.42 -104.62 -0.57 -1.33 16 6 C -0.09 -1.78 5.43 -104.61 -0.57 -2.35 16 7 C -0.13 -2.26 8.70 -39.44 -0.34 -2.60 16 8 C -0.05 -0.79 2.77 -91.94 -0.25 -1.04 16 9 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 10 C -0.14 -2.01 8.72 37.16 0.32 -1.69 16 11 C -0.12 -2.15 5.25 -26.70 -0.14 -2.29 16 12 C -0.10 -2.25 5.24 -26.69 -0.14 -2.39 16 13 C 0.06 1.53 2.34 -93.09 -0.22 1.31 16 14 H 0.07 2.04 7.20 -51.93 -0.37 1.67 16 15 C -0.51 -13.62 6.88 -34.44 -0.24 -13.85 16 16 H 0.05 1.49 7.82 -52.49 -0.41 1.08 16 17 C 0.07 1.78 5.45 -17.82 -0.10 1.68 16 18 N -0.89 -25.40 12.75 55.43 0.71 -24.70 16 19 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 25 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 26 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 27 H 0.13 2.91 7.27 -52.48 -0.38 2.53 16 28 H 0.11 1.63 6.32 -52.48 -0.33 1.30 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.67 6.36 -51.93 -0.33 0.34 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 34 H 0.04 1.01 8.08 -51.93 -0.42 0.59 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 286.97 15.07 4.32 4.32 Total: -1.00 -27.88 286.97 -8.83 -36.71 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.60 Total: 1.13 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: -3.24 Total: -33.57 kcal Atomic # 7 Polarization: -25.40 SS G_CDS: 0.71 Total: -24.70 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.88 -8.83 -36.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260998253.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.571 kcal (2) G-P(sol) polarization free energy of solvation -27.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds