Wall clock time and date at job start Mon Mar 30 2020 03:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38267 * 120.10938 * 2 1 4 4 C 1.37938 * 119.76446 * 179.85614 * 3 2 1 5 5 C 1.38909 * 120.55001 * 0.02562 * 4 3 2 6 6 C 1.37664 * 119.68109 * 0.18481 * 5 4 3 7 7 C 1.37932 * 120.11647 * 179.97438 * 2 1 3 8 8 C 1.50638 * 122.57104 * 179.65074 * 6 5 4 9 9 H 1.08997 * 109.25074 * 257.23395 * 8 6 5 10 10 C 1.53002 * 109.25286 * 137.80254 * 8 6 5 11 11 C 1.52735 * 110.58967 * 17.51792 * 8 6 5 12 12 C 1.53329 * 108.38483 * 308.96825 * 11 8 6 13 13 C 1.50628 * 117.74822 * 180.23261 * 5 4 3 14 14 H 1.08991 * 109.22814 * 77.28340 * 13 5 4 15 15 C 1.50702 * 109.25204 * 317.83107 * 13 5 4 16 16 H 1.08000 * 120.00169 * 323.84808 * 15 13 5 17 17 C 1.37877 * 119.99711 * 143.84417 * 15 13 5 18 18 N 1.31513 * 120.00307 * 354.26431 * 17 15 13 19 19 Si 1.86806 * 119.99927 * 174.53196 * 17 15 13 20 20 H 1.48500 * 109.47034 * 179.72542 * 19 17 15 21 21 H 1.48502 * 109.47353 * 299.72901 * 19 17 15 22 22 H 1.48504 * 109.46824 * 59.72868 * 19 17 15 23 23 H 1.08997 * 109.47071 * 89.99831 * 1 2 3 24 24 H 1.09001 * 109.47039 * 209.99988 * 1 2 3 25 25 H 1.08998 * 109.47265 * 330.00360 * 1 2 3 26 26 H 1.07992 * 120.11766 * 359.87577 * 3 2 1 27 27 H 1.08005 * 119.72386 * 180.02562 * 4 3 2 28 28 H 1.08004 * 119.71956 * 0.04479 * 7 2 1 29 29 H 1.08994 * 109.46998 * 298.89834 * 10 8 6 30 30 H 1.09001 * 109.46674 * 58.90150 * 10 8 6 31 31 H 1.09000 * 109.46754 * 178.89120 * 10 8 6 32 32 H 1.09000 * 109.67781 * 189.24761 * 11 8 6 33 33 H 1.08998 * 109.67999 * 68.69523 * 11 8 6 34 34 H 1.08992 * 109.68611 * 310.19954 * 12 11 8 35 35 H 1.09005 * 109.68390 * 189.63878 * 12 11 8 36 36 H 0.97004 * 120.00277 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2006 1.1961 0.0000 4 6 3.5800 1.1878 0.0030 5 6 4.2788 -0.0127 0.0055 6 6 3.5882 -1.2035 0.0011 7 6 2.1991 -1.1931 0.0005 8 6 4.2794 -2.5419 -0.0043 9 1 4.2420 -2.9617 -1.0095 10 6 3.5605 -3.4850 0.9625 11 6 5.7375 -2.3951 0.4262 12 6 6.3810 -1.2867 -0.4154 13 6 5.7837 0.0519 0.0141 14 1 6.1269 0.2924 1.0203 15 6 6.2404 1.1279 -0.9371 16 1 5.7029 1.2979 -1.8583 17 6 7.3442 1.8953 -0.6312 18 7 7.9310 1.7664 0.5387 19 14 8.0019 3.1234 -1.8757 20 1 9.1819 3.8220 -1.3057 21 1 8.4008 2.4078 -3.1142 22 1 6.9457 4.1169 -2.1963 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6644 2.1335 -0.0020 27 1 4.1211 2.1225 0.0034 28 1 1.6564 -2.1269 0.0002 29 1 3.6040 -3.0737 1.9710 30 1 2.5193 -3.5923 0.6584 31 1 4.0460 -4.4607 0.9466 32 1 6.2652 -3.3345 0.2613 33 1 5.7834 -2.1281 1.4820 34 1 6.1730 -1.4597 -1.4712 35 1 7.4583 -1.2782 -0.2495 36 1 8.7074 2.3066 0.7541 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260998253.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:39 Heat of formation + Delta-G solvation = -23.178403 kcal Electronic energy + Delta-G solvation = -16098.012939 eV Core-core repulsion = 13737.717420 eV Total energy + Delta-G solvation = -2360.295519 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.97403 -37.46053 -35.65868 -33.58076 -32.31165 -30.47899 -28.75306 -27.15581 -25.33144 -23.70964 -22.60803 -21.76553 -19.76175 -18.46654 -17.11300 -16.33436 -16.16385 -16.10242 -14.82771 -14.76752 -14.55561 -14.33312 -14.19327 -13.70317 -13.45097 -13.15898 -12.89677 -12.82495 -12.70626 -12.49513 -12.44939 -12.21426 -11.95584 -11.78009 -11.63242 -11.35166 -10.86062 -10.65774 -10.53167 -9.41168 -9.03098 -8.13908 -6.23232 0.68125 0.73578 1.37543 1.38773 1.46856 2.39881 3.05768 3.14066 3.89757 3.97844 4.17994 4.22958 4.33271 4.44944 4.54705 4.63844 4.70120 4.76060 4.85265 4.93008 4.97613 5.00480 5.11090 5.15296 5.20991 5.23306 5.36118 5.39474 5.51958 5.54831 5.58791 5.65415 5.82056 5.87195 5.94511 6.18489 6.34242 6.47552 6.91153 7.41317 8.93197 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.025371 B = 0.009221 C = 0.007176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.374164 B = 3035.661149 C = 3900.834758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.111 4.111 3 C -0.139 4.139 4 C -0.124 4.124 5 C -0.073 4.073 6 C -0.096 4.096 7 C -0.127 4.127 8 C -0.046 4.046 9 H 0.081 0.919 10 C -0.135 4.135 11 C -0.108 4.108 12 C -0.097 4.097 13 C 0.063 3.937 14 H 0.029 0.971 15 C -0.514 4.514 16 H 0.044 0.956 17 C 0.014 3.986 18 N -0.927 5.927 19 Si 0.950 3.050 20 H -0.282 1.282 21 H -0.270 1.270 22 H -0.272 1.272 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.129 0.871 27 H 0.096 0.904 28 H 0.144 0.856 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.031 0.969 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.952 -7.721 -0.453 14.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.111 4.111 3 C -0.157 4.157 4 C -0.142 4.142 5 C -0.073 4.073 6 C -0.096 4.096 7 C -0.144 4.144 8 C -0.064 4.064 9 H 0.099 0.901 10 C -0.192 4.192 11 C -0.146 4.146 12 C -0.135 4.135 13 C 0.045 3.955 14 H 0.047 0.953 15 C -0.552 4.552 16 H 0.063 0.937 17 C -0.184 4.184 18 N -0.566 5.566 19 Si 0.776 3.224 20 H -0.208 1.208 21 H -0.196 1.196 22 H -0.197 1.197 23 H 0.094 0.906 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.147 0.853 27 H 0.114 0.886 28 H 0.162 0.838 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.809 -7.644 -0.340 14.071 hybrid contribution 1.136 1.291 -0.502 1.792 sum -10.673 -6.353 -0.842 12.449 Atomic orbital electron populations 1.20726 0.88824 1.03405 1.02787 1.20119 0.97516 0.92568 1.00909 1.21139 0.93279 0.98677 1.02612 1.21255 0.94519 0.97970 1.00473 1.20351 0.97098 0.92793 0.97026 1.19919 0.94167 0.94422 1.01084 1.21247 0.92824 0.98381 1.01976 1.19999 0.94017 0.91960 1.00442 0.90085 1.21849 1.00706 0.98491 0.98136 1.21622 0.95532 0.98472 0.98961 1.21491 0.98132 0.95591 0.98255 1.17792 0.87580 0.93444 0.96690 0.95286 1.21254 1.11682 1.17398 1.04855 0.93749 1.25715 0.97239 0.98731 0.96726 1.70033 1.22266 1.42350 1.21999 0.85732 0.77943 0.79220 0.79553 1.20759 1.19553 1.19686 0.90638 0.90329 0.91140 0.85317 0.88575 0.83838 0.93521 0.90904 0.90903 0.90475 0.93506 0.93889 0.95048 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.14 10.02 71.24 0.71 -1.42 16 2 C -0.11 -3.44 5.87 -19.93 -0.12 -3.56 16 3 C -0.14 -5.04 9.71 22.21 0.22 -4.83 16 4 C -0.12 -5.59 9.04 22.36 0.20 -5.39 16 5 C -0.07 -3.36 5.42 -19.86 -0.11 -3.47 16 6 C -0.10 -3.64 5.43 -19.86 -0.11 -3.75 16 7 C -0.13 -4.01 8.70 22.36 0.19 -3.82 16 8 C -0.05 -1.48 2.77 -11.65 -0.03 -1.51 16 9 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 10 C -0.13 -3.28 8.72 71.98 0.63 -2.65 16 11 C -0.11 -3.96 5.25 30.62 0.16 -3.80 16 12 C -0.10 -4.47 5.24 30.62 0.16 -4.31 16 13 C 0.06 3.33 2.34 -12.39 -0.03 3.30 16 14 H 0.03 1.75 7.20 -2.39 -0.02 1.73 16 15 C -0.51 -29.22 6.88 25.60 0.18 -29.04 16 16 H 0.04 2.54 7.82 -2.91 -0.02 2.52 16 17 C 0.01 0.80 5.45 84.65 0.46 1.26 16 18 N -0.93 -55.65 12.75 21.45 0.27 -55.38 16 19 Si 0.95 44.84 29.54 68.60 2.03 46.87 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 23 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.08 1.37 8.09 -2.39 -0.02 1.36 16 25 H 0.07 1.35 8.09 -2.39 -0.02 1.33 16 26 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 27 H 0.10 4.78 7.27 -2.91 -0.02 4.76 16 28 H 0.14 3.52 6.32 -2.91 -0.02 3.50 16 29 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.48 6.36 -2.39 -0.02 1.47 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 34 H 0.04 1.96 8.08 -2.39 -0.02 1.94 16 35 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -64.22 286.97 5.86 -58.36 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 1.04 Total: 13.15 kcal Atomic # 6 Polarization: -65.52 SS G_CDS: 2.52 Total: -63.00 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.27 Total: -55.38 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -64.22 5.86 -58.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260998253.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.181 kcal (2) G-P(sol) polarization free energy of solvation -64.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds