Wall clock time and date at job start Mon Mar 30 2020 03:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38265 * 120.11420 * 2 1 4 4 C 1.37930 * 119.76926 * 180.09816 * 3 2 1 5 5 C 1.38912 * 120.55129 * 359.93819 * 4 3 2 6 6 C 1.37668 * 119.67500 * 359.83365 * 5 4 3 7 7 C 1.37932 * 120.11438 * 179.97438 * 2 1 3 8 8 C 1.50629 * 122.56106 * 180.67564 * 6 5 4 9 9 H 1.09009 * 109.25394 * 102.49474 * 8 6 5 10 10 C 1.52993 * 109.25802 * 221.96148 * 8 6 5 11 11 C 1.52721 * 110.61499 * 342.23926 * 8 6 5 12 12 C 1.53330 * 108.38886 * 51.05292 * 11 8 6 13 13 C 1.50623 * 117.75754 * 179.78524 * 5 4 3 14 14 H 1.08992 * 109.25641 * 41.99234 * 13 5 4 15 15 C 1.50702 * 109.25358 * 282.56313 * 13 5 4 16 16 H 1.07998 * 120.00085 * 333.67370 * 15 13 5 17 17 C 1.37872 * 120.00071 * 153.68299 * 15 13 5 18 18 N 1.31513 * 120.00551 * 186.55523 * 17 15 13 19 19 Si 1.86806 * 119.99976 * 6.55559 * 17 15 13 20 20 H 1.48502 * 109.47318 * 84.82488 * 19 17 15 21 21 H 1.48498 * 109.47249 * 204.82975 * 19 17 15 22 22 H 1.48505 * 109.46939 * 324.82264 * 19 17 15 23 23 H 1.08996 * 109.47440 * 89.99709 * 1 2 3 24 24 H 1.08998 * 109.47343 * 210.00317 * 1 2 3 25 25 H 1.09003 * 109.47181 * 330.00018 * 1 2 3 26 26 H 1.07996 * 120.11200 * 0.07315 * 3 2 1 27 27 H 1.08004 * 119.72771 * 179.97438 * 4 3 2 28 28 H 1.08005 * 119.72790 * 0.06860 * 7 2 1 29 29 H 1.08996 * 109.47293 * 60.00113 * 10 8 6 30 30 H 1.09002 * 109.47518 * 180.02562 * 10 8 6 31 31 H 1.08997 * 109.47159 * 300.00446 * 10 8 6 32 32 H 1.08994 * 109.65470 * 291.34335 * 11 8 6 33 33 H 1.09004 * 109.70648 * 170.78950 * 11 8 6 34 34 H 1.09003 * 109.67599 * 170.44624 * 12 11 8 35 35 H 1.08994 * 109.67931 * 49.93075 * 12 11 8 36 36 H 0.97001 * 120.00419 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1960 0.0000 4 6 3.5800 1.1877 -0.0021 5 6 4.2789 -0.0128 -0.0028 6 6 3.5881 -1.2036 0.0019 7 6 2.1990 -1.1931 0.0005 8 6 4.2794 -2.5418 0.0164 9 1 4.2403 -2.9557 1.0241 10 6 3.5628 -3.4904 -0.9466 11 6 5.7383 -2.3980 -0.4117 12 6 6.3806 -1.2853 0.4252 13 6 5.7837 0.0516 -0.0101 14 1 6.1134 0.8324 0.6751 15 6 6.2604 0.3791 -1.4017 16 1 5.6536 0.1174 -2.2559 17 6 7.4713 1.0125 -1.5844 18 7 7.8291 1.4139 -2.7846 19 14 8.6039 1.3007 -0.1271 20 1 9.4302 0.0888 0.1049 21 1 9.4907 2.4576 -0.4105 22 1 7.7911 1.5848 1.0829 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.6644 2.1334 0.0012 27 1 4.1212 2.1224 -0.0025 28 1 1.6565 -2.1270 -0.0002 29 1 3.5915 -3.0753 -1.9541 30 1 4.0601 -4.4603 -0.9386 31 1 2.5260 -3.6114 -0.6330 32 1 5.7861 -2.1364 -1.4687 33 1 6.2657 -3.3366 -0.2410 34 1 7.4580 -1.2774 0.2602 35 1 6.1721 -1.4538 1.4817 36 1 8.6808 1.8599 -2.9130 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260998255.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:42 Heat of formation + Delta-G solvation = -4.691371 kcal Electronic energy + Delta-G solvation = -16229.165401 eV Core-core repulsion = 13869.671541 eV Total energy + Delta-G solvation = -2359.493861 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.60107 -36.13624 -33.82048 -31.98455 -30.98879 -29.14366 -27.21335 -25.88801 -23.65224 -22.25723 -21.20057 -20.27170 -18.34219 -16.50611 -15.56150 -15.04111 -14.78122 -14.13177 -13.57891 -13.36943 -13.12442 -12.98767 -12.77622 -12.50007 -12.13469 -11.76461 -11.54605 -11.41376 -11.21790 -11.14164 -10.94887 -10.46933 -10.35904 -10.23091 -9.92887 -9.43888 -9.20602 -9.12004 -8.53024 -8.04118 -7.55311 -6.08075 -4.06105 2.07070 2.11914 3.27412 3.36015 3.36287 4.40166 4.43803 5.15587 5.23374 5.30487 5.41807 5.53098 5.59448 5.65076 5.82210 5.83927 5.95722 6.03801 6.06870 6.09446 6.20321 6.27187 6.32950 6.47160 6.56689 6.61303 6.74232 6.77176 6.92894 7.01040 7.09735 7.18727 7.21828 7.33945 7.66728 7.72957 7.81892 8.52185 8.97854 9.53578 11.04785 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.027401 B = 0.009576 C = 0.008040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.632196 B = 2923.277870 C = 3481.964753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.117 4.117 3 C -0.128 4.128 4 C -0.110 4.110 5 C -0.024 4.024 6 C -0.081 4.081 7 C -0.125 4.125 8 C -0.047 4.047 9 H 0.068 0.932 10 C -0.142 4.142 11 C -0.105 4.105 12 C -0.115 4.115 13 C 0.035 3.965 14 H 0.046 0.954 15 C -0.496 4.496 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.899 5.899 19 Si 0.870 3.130 20 H -0.274 1.274 21 H -0.290 1.290 22 H -0.263 1.263 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.110 0.890 27 H 0.118 0.882 28 H 0.111 0.889 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.034 0.966 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.502 -5.389 6.708 12.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.117 4.117 3 C -0.147 4.147 4 C -0.128 4.128 5 C -0.024 4.024 6 C -0.081 4.081 7 C -0.143 4.143 8 C -0.065 4.065 9 H 0.086 0.914 10 C -0.199 4.199 11 C -0.142 4.142 12 C -0.153 4.153 13 C 0.016 3.984 14 H 0.064 0.936 15 C -0.533 4.533 16 H 0.092 0.908 17 C -0.129 4.129 18 N -0.537 5.537 19 Si 0.698 3.302 20 H -0.200 1.200 21 H -0.217 1.217 22 H -0.188 1.188 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.128 0.872 27 H 0.136 0.864 28 H 0.129 0.871 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.355 -5.291 6.589 12.607 hybrid contribution 0.729 0.288 0.560 0.963 sum -8.626 -5.003 7.149 12.270 Atomic orbital electron populations 1.20661 0.92221 1.01714 1.01491 1.19598 0.95139 0.93476 1.03460 1.20830 0.94347 0.96808 1.02673 1.21165 0.93451 0.98343 0.99832 1.19981 0.97156 0.91406 0.93842 1.19542 0.92778 0.94493 1.01261 1.20911 0.93729 0.96808 1.02820 1.19950 0.95668 0.92150 0.98708 0.91426 1.21886 0.99470 0.98565 1.00006 1.21491 0.93004 0.97452 1.02260 1.21805 0.99739 0.97253 0.96481 1.18385 0.87610 0.94020 0.98377 0.93565 1.20790 1.04194 1.37866 0.90487 0.90845 1.24988 0.97728 0.94768 0.95419 1.69904 1.22419 1.39691 1.21639 0.87006 0.81241 0.77966 0.83947 1.20024 1.21686 1.18777 0.92011 0.92382 0.92289 0.87202 0.86415 0.87102 0.92383 0.92999 0.93086 0.90131 0.93417 0.92585 0.94753 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.30 10.02 36.01 0.36 -0.94 16 2 C -0.12 -1.91 5.87 -104.72 -0.61 -2.53 16 3 C -0.13 -2.26 9.71 -39.68 -0.39 -2.65 16 4 C -0.11 -2.24 9.52 -39.44 -0.38 -2.61 16 5 C -0.02 -0.51 5.00 -104.62 -0.52 -1.03 16 6 C -0.08 -1.54 5.43 -104.62 -0.57 -2.11 16 7 C -0.12 -2.12 8.71 -39.45 -0.34 -2.47 16 8 C -0.05 -0.80 2.77 -91.95 -0.25 -1.05 16 9 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 10 C -0.14 -2.08 8.69 37.15 0.32 -1.76 16 11 C -0.10 -2.00 5.21 -26.70 -0.14 -2.14 16 12 C -0.11 -2.42 5.11 -26.70 -0.14 -2.56 16 13 C 0.03 0.81 1.74 -93.10 -0.16 0.65 16 14 H 0.05 1.11 5.70 -51.93 -0.30 0.82 16 15 C -0.50 -13.56 7.71 -34.44 -0.27 -13.83 16 16 H 0.07 2.24 8.05 -52.49 -0.42 1.82 16 17 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 18 N -0.90 -27.10 13.96 55.43 0.77 -26.32 16 19 Si 0.87 21.16 25.87 -169.99 -4.40 16.76 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.26 -6.12 6.13 56.52 0.35 -5.77 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 25 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 26 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 27 H 0.12 2.39 8.05 -52.48 -0.42 1.97 16 28 H 0.11 1.62 6.34 -52.48 -0.33 1.29 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.66 6.41 -51.93 -0.33 0.33 16 32 H 0.08 1.75 7.18 -51.93 -0.37 1.37 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 1.23 6.39 -51.93 -0.33 0.90 16 35 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 280.58 15.07 4.23 4.23 Total: -1.00 -29.27 280.58 -8.08 -37.35 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.50 Total: 1.05 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: -3.18 Total: -33.06 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.77 Total: -26.32 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.40 Total: 16.76 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.27 -8.08 -37.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260998255.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.657 kcal (2) G-P(sol) polarization free energy of solvation -29.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds