Wall clock time and date at job start Mon Mar 30 2020 03:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38265 * 120.11420 * 2 1 4 4 C 1.37930 * 119.76926 * 180.09816 * 3 2 1 5 5 C 1.38912 * 120.55129 * 359.93819 * 4 3 2 6 6 C 1.37668 * 119.67500 * 359.83365 * 5 4 3 7 7 C 1.37932 * 120.11438 * 179.97438 * 2 1 3 8 8 C 1.50629 * 122.56106 * 180.67564 * 6 5 4 9 9 H 1.09009 * 109.25394 * 102.49474 * 8 6 5 10 10 C 1.52993 * 109.25802 * 221.96148 * 8 6 5 11 11 C 1.52721 * 110.61499 * 342.23926 * 8 6 5 12 12 C 1.53330 * 108.38886 * 51.05292 * 11 8 6 13 13 C 1.50623 * 117.75754 * 179.78524 * 5 4 3 14 14 H 1.08992 * 109.25641 * 41.99234 * 13 5 4 15 15 C 1.50702 * 109.25358 * 282.56313 * 13 5 4 16 16 H 1.07998 * 120.00085 * 333.67370 * 15 13 5 17 17 C 1.37872 * 120.00071 * 153.68299 * 15 13 5 18 18 N 1.31513 * 120.00551 * 186.55523 * 17 15 13 19 19 Si 1.86806 * 119.99976 * 6.55559 * 17 15 13 20 20 H 1.48502 * 109.47318 * 84.82488 * 19 17 15 21 21 H 1.48498 * 109.47249 * 204.82975 * 19 17 15 22 22 H 1.48505 * 109.46939 * 324.82264 * 19 17 15 23 23 H 1.08996 * 109.47440 * 89.99709 * 1 2 3 24 24 H 1.08998 * 109.47343 * 210.00317 * 1 2 3 25 25 H 1.09003 * 109.47181 * 330.00018 * 1 2 3 26 26 H 1.07996 * 120.11200 * 0.07315 * 3 2 1 27 27 H 1.08004 * 119.72771 * 179.97438 * 4 3 2 28 28 H 1.08005 * 119.72790 * 0.06860 * 7 2 1 29 29 H 1.08996 * 109.47293 * 60.00113 * 10 8 6 30 30 H 1.09002 * 109.47518 * 180.02562 * 10 8 6 31 31 H 1.08997 * 109.47159 * 300.00446 * 10 8 6 32 32 H 1.08994 * 109.65470 * 291.34335 * 11 8 6 33 33 H 1.09004 * 109.70648 * 170.78950 * 11 8 6 34 34 H 1.09003 * 109.67599 * 170.44624 * 12 11 8 35 35 H 1.08994 * 109.67931 * 49.93075 * 12 11 8 36 36 H 0.97001 * 120.00419 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1960 0.0000 4 6 3.5800 1.1877 -0.0021 5 6 4.2789 -0.0128 -0.0028 6 6 3.5881 -1.2036 0.0019 7 6 2.1990 -1.1931 0.0005 8 6 4.2794 -2.5418 0.0164 9 1 4.2403 -2.9557 1.0241 10 6 3.5628 -3.4904 -0.9466 11 6 5.7383 -2.3980 -0.4117 12 6 6.3806 -1.2853 0.4252 13 6 5.7837 0.0516 -0.0101 14 1 6.1134 0.8324 0.6751 15 6 6.2604 0.3791 -1.4017 16 1 5.6536 0.1174 -2.2559 17 6 7.4713 1.0125 -1.5844 18 7 7.8291 1.4139 -2.7846 19 14 8.6039 1.3007 -0.1271 20 1 9.4302 0.0888 0.1049 21 1 9.4907 2.4576 -0.4105 22 1 7.7911 1.5848 1.0829 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.6644 2.1334 0.0012 27 1 4.1212 2.1224 -0.0025 28 1 1.6565 -2.1270 -0.0002 29 1 3.5915 -3.0753 -1.9541 30 1 4.0601 -4.4603 -0.9386 31 1 2.5260 -3.6114 -0.6330 32 1 5.7861 -2.1364 -1.4687 33 1 6.2657 -3.3366 -0.2410 34 1 7.4580 -1.2774 0.2602 35 1 6.1721 -1.4538 1.4817 36 1 8.6808 1.8599 -2.9130 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260998255.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:42 Heat of formation + Delta-G solvation = -20.199478 kcal Electronic energy + Delta-G solvation = -16229.837883 eV Core-core repulsion = 13869.671541 eV Total energy + Delta-G solvation = -2360.166343 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.06344 -37.60524 -35.50101 -33.83636 -32.46045 -30.58045 -28.75737 -27.30438 -25.37580 -23.73677 -22.68495 -21.79933 -19.97263 -18.51584 -17.18237 -16.49171 -16.20153 -15.90259 -15.06511 -14.77773 -14.59282 -14.42863 -14.38918 -14.09795 -13.52450 -13.03016 -12.92521 -12.88941 -12.81836 -12.62345 -12.46834 -12.02929 -11.95448 -11.79871 -11.72230 -11.14589 -10.99510 -10.79029 -10.63220 -9.45684 -9.04388 -8.28259 -6.29687 0.64140 0.67907 1.32272 1.33597 1.43174 2.33236 2.98450 3.07438 3.88200 3.93763 4.13592 4.16738 4.27182 4.40863 4.49930 4.59924 4.60706 4.69871 4.80516 4.84901 4.91009 4.92446 5.06245 5.11522 5.15235 5.19472 5.25696 5.33213 5.39750 5.44959 5.54974 5.57825 5.72509 5.83406 5.84809 6.13324 6.29253 6.38664 6.74770 7.32912 8.88639 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.027401 B = 0.009576 C = 0.008040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.632196 B = 2923.277870 C = 3481.964753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.110 4.110 3 C -0.134 4.134 4 C -0.136 4.136 5 C -0.065 4.065 6 C -0.090 4.090 7 C -0.126 4.126 8 C -0.046 4.046 9 H 0.092 0.908 10 C -0.137 4.137 11 C -0.102 4.102 12 C -0.115 4.115 13 C 0.037 3.963 14 H 0.034 0.966 15 C -0.486 4.486 16 H 0.023 0.977 17 C 0.013 3.987 18 N -0.951 5.951 19 Si 0.934 3.066 20 H -0.261 1.261 21 H -0.290 1.290 22 H -0.247 1.247 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.133 0.867 27 H 0.100 0.900 28 H 0.143 0.857 29 H 0.035 0.965 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.060 0.940 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.521 -7.118 8.916 16.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.110 4.110 3 C -0.152 4.152 4 C -0.154 4.154 5 C -0.065 4.065 6 C -0.090 4.090 7 C -0.144 4.144 8 C -0.064 4.064 9 H 0.110 0.890 10 C -0.194 4.194 11 C -0.140 4.140 12 C -0.153 4.153 13 C 0.018 3.982 14 H 0.052 0.948 15 C -0.524 4.524 16 H 0.042 0.958 17 C -0.184 4.184 18 N -0.591 5.591 19 Si 0.758 3.242 20 H -0.186 1.186 21 H -0.217 1.217 22 H -0.171 1.171 23 H 0.091 0.909 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.151 0.849 27 H 0.119 0.881 28 H 0.161 0.839 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.392 -7.032 8.813 16.028 hybrid contribution 1.211 0.824 -0.191 1.477 sum -10.181 -6.208 8.622 14.715 Atomic orbital electron populations 1.20736 0.88822 1.03588 1.02706 1.20137 0.97578 0.92626 1.00697 1.21116 0.93221 0.98764 1.02070 1.21229 0.95067 0.97543 1.01538 1.19944 0.96080 0.93108 0.97330 1.19862 0.94104 0.94467 1.00523 1.21276 0.92888 0.98501 1.01714 1.20020 0.93993 0.91821 1.00580 0.88962 1.21847 1.00875 0.98606 0.98036 1.21445 0.95209 0.97822 0.99497 1.21747 0.98818 0.96454 0.98287 1.18264 0.89678 0.95005 0.95215 0.94764 1.20913 1.03332 1.36766 0.91416 0.95830 1.25827 0.99469 0.94835 0.98234 1.70061 1.23209 1.41687 1.24174 0.85975 0.79169 0.78211 0.80800 1.18593 1.21658 1.17063 0.90939 0.90262 0.90811 0.84891 0.88134 0.83897 0.94588 0.90939 0.90677 0.93994 0.90685 0.93935 0.92186 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.08 10.02 71.24 0.71 -1.37 16 2 C -0.11 -3.30 5.87 -19.93 -0.12 -3.41 16 3 C -0.13 -4.55 9.71 22.20 0.22 -4.34 16 4 C -0.14 -5.66 9.52 22.36 0.21 -5.45 16 5 C -0.06 -2.82 5.00 -19.86 -0.10 -2.92 16 6 C -0.09 -3.31 5.43 -19.86 -0.11 -3.41 16 7 C -0.13 -3.90 8.71 22.36 0.19 -3.71 16 8 C -0.05 -1.47 2.77 -11.66 -0.03 -1.50 16 9 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 10 C -0.14 -3.59 8.69 71.98 0.63 -2.96 16 11 C -0.10 -3.83 5.21 30.61 0.16 -3.67 16 12 C -0.12 -4.79 5.11 30.62 0.16 -4.64 16 13 C 0.04 1.78 1.74 -12.40 -0.02 1.76 16 14 H 0.03 1.69 5.70 -2.39 -0.01 1.67 16 15 C -0.49 -28.14 7.71 25.60 0.20 -27.94 16 16 H 0.02 1.55 8.05 -2.91 -0.02 1.53 16 17 C 0.01 0.76 5.47 84.65 0.46 1.22 16 18 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 19 Si 0.93 44.76 25.87 68.60 1.77 46.53 16 20 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 22 H -0.25 -11.07 6.13 99.48 0.61 -10.46 16 23 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.08 1.32 8.09 -2.39 -0.02 1.30 16 25 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 26 H 0.13 3.78 8.06 -2.91 -0.02 3.75 16 27 H 0.10 4.35 8.05 -2.91 -0.02 4.33 16 28 H 0.14 3.46 6.34 -2.91 -0.02 3.44 16 29 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 1.60 6.41 -2.39 -0.02 1.59 16 32 H 0.04 1.87 7.18 -2.39 -0.02 1.86 16 33 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.04 1.84 6.39 -2.39 -0.02 1.82 16 35 H 0.06 2.17 8.10 -2.39 -0.02 2.16 16 36 H 0.26 15.74 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -67.54 280.58 5.58 -61.95 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.95 Total: 13.87 kcal Atomic # 6 Polarization: -64.90 SS G_CDS: 2.56 Total: -62.34 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: 0.30 Total: -60.02 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.77 Total: 46.53 kcal Total: -67.54 5.58 -61.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260998255.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.754 kcal (2) G-P(sol) polarization free energy of solvation -67.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds