Wall clock time and date at job start Mon Mar 30 2020 03:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38272 * 120.11077 * 2 1 4 4 C 1.37940 * 119.76743 * 179.82534 * 3 2 1 5 5 C 1.38907 * 120.54229 * 0.62697 * 4 3 2 6 6 C 1.37663 * 119.68649 * 359.48965 * 5 4 3 7 7 C 1.37924 * 120.11585 * 180.27744 * 2 1 3 8 8 C 1.50631 * 122.56616 * 180.44475 * 6 5 4 9 9 H 1.09004 * 109.25082 * 222.03960 * 8 6 5 10 10 C 1.53007 * 109.25034 * 102.58068 * 8 6 5 11 11 C 1.52728 * 110.59037 * 342.29156 * 8 6 5 12 12 C 1.53320 * 108.38549 * 51.09230 * 11 8 6 13 13 C 1.50632 * 117.74934 * 179.32015 * 5 4 3 14 14 H 1.09006 * 109.22616 * 282.72507 * 13 5 4 15 15 C 1.50692 * 109.25533 * 42.17817 * 13 5 4 16 16 H 1.08006 * 119.99982 * 36.16365 * 15 13 5 17 17 C 1.37883 * 120.00468 * 216.16222 * 15 13 5 18 18 N 1.31509 * 119.99667 * 5.73701 * 17 15 13 19 19 Si 1.86797 * 120.00139 * 185.73308 * 17 15 13 20 20 H 1.48505 * 109.47294 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47155 * 120.00153 * 19 17 15 22 22 H 1.48500 * 109.47246 * 240.00172 * 19 17 15 23 23 H 1.09004 * 109.46849 * 269.72828 * 1 2 3 24 24 H 1.08993 * 109.46921 * 149.72334 * 1 2 3 25 25 H 1.09004 * 109.47146 * 29.72649 * 1 2 3 26 26 H 1.07990 * 120.11653 * 0.08063 * 3 2 1 27 27 H 1.07999 * 119.72375 * 180.29668 * 4 3 2 28 28 H 1.07998 * 119.72761 * 359.90206 * 7 2 1 29 29 H 1.08993 * 109.47778 * 59.99896 * 10 8 6 30 30 H 1.08997 * 109.46720 * 179.97438 * 10 8 6 31 31 H 1.08997 * 109.46628 * 299.99319 * 10 8 6 32 32 H 1.09001 * 109.68294 * 170.81573 * 11 8 6 33 33 H 1.09006 * 109.67801 * 291.36776 * 11 8 6 34 34 H 1.09005 * 109.68478 * 49.83633 * 12 11 8 35 35 H 1.08994 * 109.68986 * 170.35684 * 12 11 8 36 36 H 0.96999 * 120.00195 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1961 0.0000 4 6 3.5801 1.1879 0.0037 5 6 4.2788 -0.0126 -0.0058 6 6 3.5882 -1.2035 -0.0082 7 6 2.1991 -1.1930 -0.0058 8 6 4.2796 -2.5418 -0.0084 9 1 3.7667 -3.2111 -0.6991 10 6 4.2291 -3.1358 1.4007 11 6 5.7369 -2.3934 -0.4406 12 6 6.3819 -1.2888 0.4047 13 6 5.7837 0.0519 -0.0169 14 1 6.1251 0.2972 -1.0227 15 6 6.2423 1.1231 0.9386 16 1 5.7067 1.2886 1.8618 17 6 7.3457 1.8920 0.6343 18 7 7.9301 1.7689 -0.5373 19 14 8.0102 3.1087 1.8863 20 1 7.1806 3.0556 3.1169 21 1 9.4139 2.7579 2.2208 22 1 7.9648 4.4794 1.3169 23 1 -0.3633 -0.0049 1.0277 24 1 -0.3633 -0.8874 -0.5181 25 1 -0.3634 0.8925 -0.5096 26 1 1.6645 2.1335 0.0013 27 1 4.1212 2.1225 0.0085 28 1 1.6565 -2.1269 -0.0087 29 1 3.1902 -3.2615 1.7052 30 1 4.7282 -4.1048 1.4045 31 1 4.7329 -2.4645 2.0962 32 1 6.2647 -3.3335 -0.2808 33 1 5.7811 -2.1216 -1.4953 34 1 6.1761 -1.4668 1.4603 35 1 7.4589 -1.2798 0.2372 36 1 8.7061 2.3101 -0.7515 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260998256.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:44 Heat of formation + Delta-G solvation = -10.275368 kcal Electronic energy + Delta-G solvation = -16159.111669 eV Core-core repulsion = 13799.375668 eV Total energy + Delta-G solvation = -2359.736001 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.47071 -36.09184 -33.72990 -31.75727 -30.63664 -29.05148 -27.07987 -25.64141 -23.96969 -22.09356 -21.03286 -20.54786 -17.65320 -16.40309 -15.54482 -14.79831 -14.46346 -14.26935 -13.79490 -13.34404 -13.05877 -12.70988 -12.50074 -12.31224 -11.99066 -11.63653 -11.56211 -11.51195 -11.07055 -10.95307 -10.66707 -10.56394 -10.37729 -10.04969 -9.95142 -9.56445 -8.98221 -8.92225 -8.50630 -7.93357 -7.45783 -6.04561 -4.06778 2.17815 2.24143 3.27592 3.36394 3.41021 4.39777 4.58357 5.22821 5.25716 5.38343 5.51200 5.60207 5.66456 5.74212 5.87761 5.93492 6.05666 6.10435 6.14697 6.17109 6.33015 6.39266 6.50354 6.52466 6.63638 6.80614 6.87100 6.89454 7.08468 7.18154 7.27867 7.33708 7.53940 7.74292 7.84095 7.91284 7.99524 8.41712 9.02188 9.55722 11.03776 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.024377 B = 0.009464 C = 0.007508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.341811 B = 2957.829061 C = 3728.580309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.120 4.120 3 C -0.135 4.135 4 C -0.098 4.098 5 C -0.033 4.033 6 C -0.090 4.090 7 C -0.127 4.127 8 C -0.044 4.044 9 H 0.063 0.937 10 C -0.140 4.140 11 C -0.118 4.118 12 C -0.102 4.102 13 C 0.061 3.939 14 H 0.074 0.926 15 C -0.504 4.504 16 H 0.056 0.944 17 C 0.064 3.936 18 N -0.892 5.892 19 Si 0.888 3.112 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.107 0.893 27 H 0.128 0.872 28 H 0.104 0.896 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.031 -5.882 0.657 10.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.120 4.120 3 C -0.153 4.153 4 C -0.116 4.116 5 C -0.033 4.033 6 C -0.090 4.090 7 C -0.145 4.145 8 C -0.062 4.062 9 H 0.081 0.919 10 C -0.197 4.197 11 C -0.156 4.156 12 C -0.140 4.140 13 C 0.043 3.957 14 H 0.091 0.909 15 C -0.542 4.542 16 H 0.074 0.926 17 C -0.137 4.137 18 N -0.531 5.531 19 Si 0.716 3.284 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.126 0.874 27 H 0.145 0.855 28 H 0.123 0.877 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.882 -5.807 0.553 10.626 hybrid contribution 0.401 0.760 0.666 1.087 sum -8.481 -5.047 1.220 9.944 Atomic orbital electron populations 1.20650 0.92425 1.01654 1.01268 1.19567 0.94974 0.93544 1.03874 1.20909 0.94681 0.96594 1.03113 1.21368 0.92824 0.99294 0.98135 1.20499 0.98572 0.90949 0.93302 1.19594 0.92756 0.94602 1.02072 1.20793 0.93708 0.96544 1.03466 1.19909 0.96254 0.93273 0.96789 0.91879 1.21869 1.00928 1.00027 0.96920 1.21694 0.94297 0.99204 1.00395 1.21691 0.99400 0.94912 0.97973 1.17982 0.85156 0.92880 0.99668 0.90856 1.21073 1.11792 1.16695 1.04679 0.92616 1.24976 0.96922 0.96788 0.95048 1.69916 1.21804 1.41029 1.20305 0.86594 0.78986 0.80964 0.81864 1.19682 1.20958 1.21049 0.92228 0.92478 0.92347 0.87441 0.85450 0.87741 0.93427 0.93169 0.91870 0.93180 0.92443 0.93221 0.92671 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 10.02 36.01 0.36 -0.98 16 2 C -0.12 -2.04 5.87 -104.72 -0.61 -2.66 16 3 C -0.13 -2.50 9.71 -39.68 -0.39 -2.88 16 4 C -0.10 -2.12 9.04 -39.44 -0.36 -2.48 16 5 C -0.03 -0.74 5.42 -104.62 -0.57 -1.30 16 6 C -0.09 -1.76 5.02 -104.62 -0.52 -2.29 16 7 C -0.13 -2.23 9.13 -39.45 -0.36 -2.59 16 8 C -0.04 -0.76 2.74 -91.94 -0.25 -1.01 16 9 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 10 C -0.14 -2.18 8.89 37.16 0.33 -1.84 16 11 C -0.12 -2.18 5.41 -26.71 -0.14 -2.33 16 12 C -0.10 -2.24 5.19 -26.70 -0.14 -2.38 16 13 C 0.06 1.51 2.34 -93.09 -0.22 1.29 16 14 H 0.07 2.03 7.20 -51.93 -0.37 1.65 16 15 C -0.50 -13.50 6.88 -34.44 -0.24 -13.74 16 16 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 17 C 0.06 1.75 5.45 -17.82 -0.10 1.65 16 18 N -0.89 -25.35 12.75 55.43 0.71 -24.65 16 19 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 25 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 26 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 27 H 0.13 2.90 7.27 -52.49 -0.38 2.52 16 28 H 0.10 1.59 8.05 -52.49 -0.42 1.17 16 29 H 0.05 0.68 8.07 -51.93 -0.42 0.26 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 1.08 6.47 -51.93 -0.34 0.75 16 32 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 33 H 0.06 1.09 8.10 -51.93 -0.42 0.67 16 34 H 0.05 1.08 6.26 -51.93 -0.32 0.76 16 35 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 287.17 15.07 4.33 4.33 Total: -1.00 -27.84 287.17 -8.79 -36.63 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -5.60 Total: 1.17 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: -3.20 Total: -33.54 kcal Atomic # 7 Polarization: -25.35 SS G_CDS: 0.71 Total: -24.65 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.84 -8.79 -36.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260998256.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.357 kcal (2) G-P(sol) polarization free energy of solvation -27.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds