Wall clock time and date at job start Mon Mar 30 2020 03:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38272 * 120.11077 * 2 1 4 4 C 1.37940 * 119.76743 * 179.82534 * 3 2 1 5 5 C 1.38907 * 120.54229 * 0.62697 * 4 3 2 6 6 C 1.37663 * 119.68649 * 359.48965 * 5 4 3 7 7 C 1.37924 * 120.11585 * 180.27744 * 2 1 3 8 8 C 1.50631 * 122.56616 * 180.44475 * 6 5 4 9 9 H 1.09004 * 109.25082 * 222.03960 * 8 6 5 10 10 C 1.53007 * 109.25034 * 102.58068 * 8 6 5 11 11 C 1.52728 * 110.59037 * 342.29156 * 8 6 5 12 12 C 1.53320 * 108.38549 * 51.09230 * 11 8 6 13 13 C 1.50632 * 117.74934 * 179.32015 * 5 4 3 14 14 H 1.09006 * 109.22616 * 282.72507 * 13 5 4 15 15 C 1.50692 * 109.25533 * 42.17817 * 13 5 4 16 16 H 1.08006 * 119.99982 * 36.16365 * 15 13 5 17 17 C 1.37883 * 120.00468 * 216.16222 * 15 13 5 18 18 N 1.31509 * 119.99667 * 5.73701 * 17 15 13 19 19 Si 1.86797 * 120.00139 * 185.73308 * 17 15 13 20 20 H 1.48505 * 109.47294 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47155 * 120.00153 * 19 17 15 22 22 H 1.48500 * 109.47246 * 240.00172 * 19 17 15 23 23 H 1.09004 * 109.46849 * 269.72828 * 1 2 3 24 24 H 1.08993 * 109.46921 * 149.72334 * 1 2 3 25 25 H 1.09004 * 109.47146 * 29.72649 * 1 2 3 26 26 H 1.07990 * 120.11653 * 0.08063 * 3 2 1 27 27 H 1.07999 * 119.72375 * 180.29668 * 4 3 2 28 28 H 1.07998 * 119.72761 * 359.90206 * 7 2 1 29 29 H 1.08993 * 109.47778 * 59.99896 * 10 8 6 30 30 H 1.08997 * 109.46720 * 179.97438 * 10 8 6 31 31 H 1.08997 * 109.46628 * 299.99319 * 10 8 6 32 32 H 1.09001 * 109.68294 * 170.81573 * 11 8 6 33 33 H 1.09006 * 109.67801 * 291.36776 * 11 8 6 34 34 H 1.09005 * 109.68478 * 49.83633 * 12 11 8 35 35 H 1.08994 * 109.68986 * 170.35684 * 12 11 8 36 36 H 0.96999 * 120.00195 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1961 0.0000 4 6 3.5801 1.1879 0.0037 5 6 4.2788 -0.0126 -0.0058 6 6 3.5882 -1.2035 -0.0082 7 6 2.1991 -1.1930 -0.0058 8 6 4.2796 -2.5418 -0.0084 9 1 3.7667 -3.2111 -0.6991 10 6 4.2291 -3.1358 1.4007 11 6 5.7369 -2.3934 -0.4406 12 6 6.3819 -1.2888 0.4047 13 6 5.7837 0.0519 -0.0169 14 1 6.1251 0.2972 -1.0227 15 6 6.2423 1.1231 0.9386 16 1 5.7067 1.2886 1.8618 17 6 7.3457 1.8920 0.6343 18 7 7.9301 1.7689 -0.5373 19 14 8.0102 3.1087 1.8863 20 1 7.1806 3.0556 3.1169 21 1 9.4139 2.7579 2.2208 22 1 7.9648 4.4794 1.3169 23 1 -0.3633 -0.0049 1.0277 24 1 -0.3633 -0.8874 -0.5181 25 1 -0.3634 0.8925 -0.5096 26 1 1.6645 2.1335 0.0013 27 1 4.1212 2.1225 0.0085 28 1 1.6565 -2.1269 -0.0087 29 1 3.1902 -3.2615 1.7052 30 1 4.7282 -4.1048 1.4045 31 1 4.7329 -2.4645 2.0962 32 1 6.2647 -3.3335 -0.2808 33 1 5.7811 -2.1216 -1.4953 34 1 6.1761 -1.4668 1.4603 35 1 7.4589 -1.2798 0.2372 36 1 8.7061 2.3101 -0.7515 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260998256.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:44 Heat of formation + Delta-G solvation = -23.257688 kcal Electronic energy + Delta-G solvation = -16159.674625 eV Core-core repulsion = 13799.375668 eV Total energy + Delta-G solvation = -2360.298957 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.99175 -37.58127 -35.53426 -33.46229 -32.19410 -30.54386 -28.62175 -27.13191 -25.68742 -23.60339 -22.65175 -22.13583 -19.15491 -18.48883 -17.17734 -16.42020 -16.11642 -15.80245 -15.27922 -14.60684 -14.54100 -14.27841 -14.20040 -13.75850 -13.31420 -13.28125 -12.94755 -12.85042 -12.81281 -12.57869 -12.41700 -12.20711 -11.86727 -11.70466 -11.58000 -11.26267 -10.81959 -10.70623 -10.53758 -9.41361 -9.03021 -8.13967 -6.22793 0.68282 0.73880 1.35526 1.37832 1.49435 2.39846 3.05831 3.14326 3.89614 4.00590 4.20896 4.22809 4.33540 4.45057 4.55633 4.66756 4.71814 4.79606 4.87629 4.91323 4.94062 4.98808 5.11476 5.17366 5.19073 5.24719 5.36079 5.38172 5.54081 5.56413 5.58971 5.67887 5.84189 5.87042 5.95393 6.19624 6.34720 6.48116 6.92121 7.41778 8.93580 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.024377 B = 0.009464 C = 0.007508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.341811 B = 2957.829061 C = 3728.580309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.111 4.111 3 C -0.139 4.139 4 C -0.124 4.124 5 C -0.071 4.071 6 C -0.094 4.094 7 C -0.126 4.126 8 C -0.043 4.043 9 H 0.093 0.907 10 C -0.135 4.135 11 C -0.112 4.112 12 C -0.096 4.096 13 C 0.063 3.937 14 H 0.028 0.972 15 C -0.510 4.510 16 H 0.044 0.956 17 C 0.013 3.987 18 N -0.927 5.927 19 Si 0.950 3.050 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.280 1.280 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.129 0.871 27 H 0.096 0.904 28 H 0.141 0.859 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.037 0.963 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.028 0.972 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.656 -7.613 1.386 13.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.111 4.111 3 C -0.157 4.157 4 C -0.143 4.143 5 C -0.071 4.071 6 C -0.094 4.094 7 C -0.144 4.144 8 C -0.062 4.062 9 H 0.111 0.889 10 C -0.192 4.192 11 C -0.149 4.149 12 C -0.134 4.134 13 C 0.044 3.956 14 H 0.046 0.954 15 C -0.548 4.548 16 H 0.062 0.938 17 C -0.185 4.185 18 N -0.567 5.567 19 Si 0.775 3.225 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.206 1.206 23 H 0.094 0.906 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.147 0.853 27 H 0.115 0.885 28 H 0.159 0.841 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.514 -7.540 1.290 13.824 hybrid contribution 1.115 1.294 0.419 1.759 sum -10.399 -6.246 1.709 12.250 Atomic orbital electron populations 1.20725 0.88856 1.03380 1.02771 1.20099 0.97487 0.92558 1.00926 1.21139 0.93294 0.98659 1.02611 1.21266 0.94515 0.98022 1.00462 1.20338 0.97089 0.92758 0.96907 1.19891 0.94063 0.94474 1.00992 1.21181 0.92803 0.98314 1.02091 1.20003 0.94812 0.92667 0.98675 0.88868 1.21825 1.02130 1.00388 0.94867 1.21625 0.95779 0.98715 0.98790 1.21512 0.97844 0.95361 0.98649 1.17803 0.87573 0.93540 0.96642 0.95384 1.21300 1.11595 1.17396 1.04537 0.93790 1.25710 0.97306 0.98718 0.96733 1.70045 1.22390 1.42299 1.21959 0.85629 0.78384 0.78835 0.79617 1.19280 1.20341 1.20581 0.90649 0.90377 0.91143 0.85314 0.88541 0.84141 0.91624 0.90745 0.94359 0.90389 0.93633 0.93260 0.95348 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.14 10.02 71.24 0.71 -1.42 16 2 C -0.11 -3.42 5.87 -19.93 -0.12 -3.54 16 3 C -0.14 -5.02 9.71 22.21 0.22 -4.80 16 4 C -0.12 -5.59 9.04 22.36 0.20 -5.39 16 5 C -0.07 -3.26 5.42 -19.86 -0.11 -3.37 16 6 C -0.09 -3.55 5.02 -19.86 -0.10 -3.65 16 7 C -0.13 -3.99 9.13 22.36 0.20 -3.78 16 8 C -0.04 -1.38 2.74 -11.65 -0.03 -1.41 16 9 H 0.09 2.47 8.13 -2.39 -0.02 2.45 16 10 C -0.14 -3.75 8.89 71.98 0.64 -3.11 16 11 C -0.11 -4.05 5.41 30.61 0.17 -3.88 16 12 C -0.10 -4.39 5.19 30.62 0.16 -4.23 16 13 C 0.06 3.28 2.34 -12.39 -0.03 3.25 16 14 H 0.03 1.69 7.20 -2.38 -0.02 1.67 16 15 C -0.51 -28.91 6.88 25.60 0.18 -28.73 16 16 H 0.04 2.53 7.82 -2.91 -0.02 2.50 16 17 C 0.01 0.76 5.45 84.66 0.46 1.22 16 18 N -0.93 -55.58 12.75 21.45 0.27 -55.31 16 19 Si 0.95 44.85 29.54 68.60 2.03 46.88 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 23 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.08 1.38 8.09 -2.39 -0.02 1.36 16 25 H 0.07 1.35 8.09 -2.38 -0.02 1.34 16 26 H 0.13 3.96 8.06 -2.92 -0.02 3.94 16 27 H 0.10 4.77 7.27 -2.91 -0.02 4.75 16 28 H 0.14 3.45 8.05 -2.91 -0.02 3.42 16 29 H 0.06 1.58 8.07 -2.39 -0.02 1.57 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.04 1.24 6.47 -2.39 -0.02 1.23 16 32 H 0.08 2.38 8.12 -2.39 -0.02 2.36 16 33 H 0.04 1.74 8.10 -2.38 -0.02 1.72 16 34 H 0.05 2.22 6.26 -2.38 -0.01 2.20 16 35 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -64.08 287.17 5.89 -58.19 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 1.04 Total: 13.09 kcal Atomic # 6 Polarization: -65.39 SS G_CDS: 2.55 Total: -62.84 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.27 Total: -55.31 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -64.08 5.89 -58.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260998256.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.929 kcal (2) G-P(sol) polarization free energy of solvation -64.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds