Wall clock time and date at job start Mon Mar 30 2020 03:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38258 * 120.00006 * 2 1 4 4 C 1.38211 * 119.99784 * 180.25721 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.47854 * 4 3 2 6 6 C 1.38214 * 120.00160 * 0.26318 * 5 4 3 7 7 C 1.50700 * 120.00249 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46924 * 90.00027 * 7 6 5 9 9 H 1.09002 * 115.55017 * 330.58182 * 8 7 6 10 10 C 1.53003 * 117.50059 * 116.25341 * 8 7 6 11 11 C 1.52999 * 117.49694 * 184.91415 * 8 7 6 12 12 H 1.09004 * 117.49978 * 145.01963 * 11 8 7 13 13 C 1.52997 * 117.50219 * 0.02562 * 11 8 7 14 14 C 1.50699 * 109.47536 * 175.00096 * 13 11 8 15 15 H 1.07993 * 119.99582 * 0.02562 * 14 13 11 16 16 C 1.37872 * 119.99900 * 179.97438 * 14 13 11 17 17 N 1.31513 * 120.00529 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99793 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46826 * 60.00241 * 18 16 14 20 20 H 1.48501 * 109.46968 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47268 * 300.00092 * 18 16 14 22 22 C 1.38211 * 119.99838 * 179.75956 * 2 1 3 23 23 H 1.08996 * 109.47283 * 270.23903 * 1 2 3 24 24 H 1.08997 * 109.46941 * 30.24198 * 1 2 3 25 25 H 1.09001 * 109.46625 * 150.23756 * 1 2 3 26 26 H 1.07998 * 119.99823 * 0.02562 * 3 2 1 27 27 H 1.08002 * 120.00200 * 179.76459 * 4 3 2 28 28 H 1.07999 * 120.00077 * 180.28382 * 5 4 3 29 29 H 1.08999 * 109.47240 * 210.00234 * 7 6 5 30 30 H 1.08999 * 109.46861 * 329.99854 * 7 6 5 31 31 H 1.08992 * 117.50128 * 214.97766 * 10 8 7 32 32 H 1.08995 * 117.49482 * 359.97438 * 10 8 7 33 33 H 1.09004 * 109.46637 * 295.00324 * 13 11 8 34 34 H 1.08996 * 109.47300 * 54.99724 * 13 11 8 35 35 H 0.96998 * 120.00755 * 180.02562 * 17 16 14 36 36 H 1.08001 * 120.00363 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1973 -0.0054 5 6 4.2717 0.0000 0.0001 6 6 3.5807 -1.1970 0.0055 7 6 4.3342 -2.5021 0.0110 8 6 4.5896 -2.9375 1.4553 9 1 4.6827 -2.1291 2.1805 10 6 3.9363 -4.2381 1.9272 11 6 5.4454 -4.1864 1.6758 12 1 6.1013 -4.1998 2.5463 13 6 5.9809 -4.9040 0.4352 14 6 6.8933 -6.0262 0.8585 15 1 7.0729 -6.2095 1.9075 16 6 7.4979 -6.8194 -0.0934 17 7 7.2780 -6.5971 -1.3708 18 14 8.6294 -8.2101 0.4313 19 1 7.8737 -9.1723 1.2729 20 1 9.1480 -8.9074 -0.7729 21 1 9.7654 -7.6564 1.2110 22 6 2.1981 -1.1970 0.0050 23 1 -0.3633 0.0043 1.0276 24 1 -0.3633 0.8878 -0.5176 25 1 -0.3632 -0.8921 -0.5102 26 1 1.6583 2.1326 0.0004 27 1 4.1205 2.1326 -0.0092 28 1 5.3517 0.0000 0.0006 29 1 3.7450 -3.2640 -0.4994 30 1 5.2864 -2.3740 -0.5037 31 1 3.6000 -4.2855 2.9628 32 1 3.3243 -4.7833 1.2087 33 1 5.1472 -5.3099 -0.1378 34 1 6.5360 -4.1975 -0.1819 35 1 7.7030 -7.1554 -2.0406 36 1 1.6581 -2.1323 0.0085 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261000217.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:09 Heat of formation + Delta-G solvation = 5.058775 kcal Electronic energy + Delta-G solvation = -14998.814699 eV Core-core repulsion = 12639.743637 eV Total energy + Delta-G solvation = -2359.071063 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.46826 -38.78432 -35.02290 -34.04143 -32.69454 -30.29155 -28.25659 -27.48067 -25.34728 -23.01452 -22.54756 -21.49445 -20.04747 -18.59927 -17.34735 -16.65604 -16.41143 -16.11261 -15.39954 -15.03906 -14.43689 -14.42941 -14.09509 -13.91681 -13.61459 -13.44249 -13.11153 -12.88910 -12.81247 -12.68511 -12.41295 -12.23850 -11.93359 -11.80487 -11.51712 -11.34207 -10.83520 -10.49396 -10.32299 -9.63695 -9.41550 -8.18879 -6.29533 0.48447 0.52714 1.39784 1.43006 1.50899 2.41330 2.86834 3.00443 3.15416 3.75799 3.96187 4.02836 4.09213 4.19560 4.28483 4.34376 4.46580 4.54708 4.64621 4.80659 4.83725 4.86301 4.90374 4.94712 5.02730 5.05006 5.24719 5.30576 5.34948 5.43855 5.55259 5.61873 5.68158 5.72909 5.81864 5.84140 6.18856 6.28128 6.85604 7.39030 8.92524 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.049020 B = 0.004509 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.053094 B = 6208.881965 C = 6326.564331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.093 4.093 3 C -0.134 4.134 4 C -0.117 4.117 5 C -0.141 4.141 6 C -0.078 4.078 7 C -0.044 4.044 8 C -0.137 4.137 9 H 0.108 0.892 10 C -0.168 4.168 11 C -0.145 4.145 12 H 0.091 0.909 13 C 0.061 3.939 14 C -0.541 4.541 15 H 0.058 0.942 16 C 0.000 4.000 17 N -0.933 5.933 18 Si 0.964 3.036 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.267 1.267 22 C -0.132 4.132 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.145 0.855 27 H 0.143 0.857 28 H 0.121 0.879 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.082 0.918 33 H -0.008 1.008 34 H -0.006 1.006 35 H 0.263 0.737 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.597 14.692 3.748 19.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.135 4.135 5 C -0.159 4.159 6 C -0.078 4.078 7 C -0.081 4.081 8 C -0.155 4.155 9 H 0.126 0.874 10 C -0.205 4.205 11 C -0.164 4.164 12 H 0.109 0.891 13 C 0.024 3.976 14 C -0.579 4.579 15 H 0.076 0.924 16 C -0.197 4.197 17 N -0.574 5.574 18 Si 0.789 3.211 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.192 1.192 22 C -0.150 4.150 23 H 0.097 0.903 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.163 0.837 27 H 0.161 0.839 28 H 0.139 0.861 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.124 0.876 32 H 0.100 0.900 33 H 0.011 0.989 34 H 0.012 0.988 35 H 0.072 0.928 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.562 14.628 3.577 18.986 hybrid contribution 0.899 -1.051 -0.115 1.388 sum -10.663 13.577 3.462 17.607 Atomic orbital electron populations 1.20824 0.89360 1.03522 1.03064 1.20253 0.97503 0.92769 0.98791 1.21326 0.94254 0.98199 1.01368 1.21398 0.94824 0.98064 0.99207 1.21229 1.00286 0.92428 1.01939 1.19907 0.94209 0.94604 0.99040 1.20014 0.99013 0.94005 0.95077 1.22265 1.05220 0.91259 0.96780 0.87405 1.23114 0.95226 1.00080 1.02031 1.22535 0.93295 1.00146 1.00376 0.89084 1.18472 0.94173 0.93368 0.91616 1.21671 1.27804 1.15254 0.93133 0.92356 1.25958 0.98447 1.00460 0.94857 1.70086 1.45272 1.40982 1.01041 0.85515 0.79025 0.78871 0.77728 1.19227 1.20764 1.19185 1.21085 0.93370 0.98467 1.02064 0.90336 0.90067 0.91435 0.83698 0.83886 0.86129 0.92274 0.92273 0.87627 0.89996 0.98941 0.98801 0.92789 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 10.01 71.24 0.71 -1.05 16 2 C -0.09 -2.08 5.88 -19.86 -0.12 -2.20 16 3 C -0.13 -2.73 9.70 22.27 0.22 -2.52 16 4 C -0.12 -2.59 10.05 22.27 0.22 -2.37 16 5 C -0.14 -3.84 9.70 22.27 0.22 -3.62 16 6 C -0.08 -2.35 5.09 -19.86 -0.10 -2.45 16 7 C -0.04 -1.56 4.71 29.85 0.14 -1.42 16 8 C -0.14 -4.88 5.72 -10.79 -0.06 -4.94 16 9 H 0.11 3.48 8.07 -2.39 -0.02 3.46 16 10 C -0.17 -6.04 9.83 30.62 0.30 -5.74 16 11 C -0.15 -6.28 5.70 -10.77 -0.06 -6.34 16 12 H 0.09 3.89 8.00 -2.39 -0.02 3.87 16 13 C 0.06 3.29 4.34 29.85 0.13 3.42 16 14 C -0.54 -31.60 9.08 25.60 0.23 -31.36 16 15 H 0.06 3.27 7.68 -2.91 -0.02 3.25 16 16 C 0.00 0.02 5.46 84.65 0.46 0.48 16 17 N -0.93 -57.72 13.29 21.45 0.28 -57.44 16 18 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 C -0.13 -3.58 9.36 22.27 0.21 -3.38 16 23 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 25 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 26 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 27 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 28 H 0.12 3.19 8.06 -2.91 -0.02 3.16 16 29 H 0.06 2.21 7.82 -2.39 -0.02 2.20 16 30 H 0.06 2.30 7.55 -2.39 -0.02 2.28 16 31 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 32 H 0.08 3.05 7.93 -2.39 -0.02 3.03 16 33 H -0.01 -0.45 7.88 -2.39 -0.02 -0.47 16 34 H -0.01 -0.37 7.60 -2.39 -0.02 -0.38 16 35 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 36 H 0.12 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -65.64 304.28 5.84 -59.81 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 1.03 Total: 14.13 kcal Atomic # 6 Polarization: -66.00 SS G_CDS: 2.50 Total: -63.49 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: 0.28 Total: -57.44 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -65.64 5.84 -59.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261000217.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.865 kcal (2) G-P(sol) polarization free energy of solvation -65.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds