Wall clock time and date at job start Mon Mar 30 2020 02:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50692 * 109.46935 * 2 1 4 4 N 1.30374 * 124.94598 * 89.97905 * 3 2 1 5 5 C 1.35051 * 109.83181 * 180.02562 * 4 3 2 6 6 C 1.40279 * 126.59847 * 179.97438 * 5 4 3 7 7 H 1.08002 * 119.99258 * 172.24686 * 6 5 4 8 8 C 1.39597 * 120.00240 * 352.24916 * 6 5 4 9 9 N 1.31160 * 120.00248 * 10.67614 * 8 6 5 10 10 Si 1.86804 * 119.99918 * 190.68012 * 8 6 5 11 11 H 1.48491 * 109.47274 * 265.05924 * 10 8 6 12 12 H 1.48500 * 109.47104 * 25.06326 * 10 8 6 13 13 H 1.48496 * 109.46952 * 145.05734 * 10 8 6 14 14 C 1.41488 * 106.79488 * 0.22601 * 5 4 3 15 15 C 1.39294 * 133.63356 * 179.77000 * 14 5 4 16 16 C 1.50702 * 120.42550 * 0.02865 * 15 14 5 17 17 C 1.38023 * 119.14588 * 180.02562 * 15 14 5 18 18 C 1.40143 * 119.41541 * 0.02562 * 17 15 14 19 19 C 1.35330 * 120.38816 * 359.66050 * 18 17 15 20 20 N 1.36370 * 124.95517 * 269.99872 * 3 2 1 21 21 H 1.09003 * 109.47243 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47020 * 299.99551 * 1 2 3 23 23 H 1.08993 * 109.47437 * 59.99829 * 1 2 3 24 24 H 1.09001 * 109.47029 * 239.99932 * 2 1 3 25 25 H 1.09001 * 109.47211 * 120.00257 * 2 1 3 26 26 H 0.97001 * 120.00537 * 179.97438 * 9 8 6 27 27 H 1.08999 * 109.47412 * 83.84467 * 16 15 14 28 28 H 1.08997 * 109.46747 * 203.84715 * 16 15 14 29 29 H 1.09000 * 109.47278 * 323.84332 * 16 15 14 30 30 H 1.08002 * 120.29521 * 180.02562 * 17 15 14 31 31 H 1.08001 * 119.80470 * 180.02562 * 18 17 15 32 32 H 1.07998 * 119.65978 * 179.89235 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2808 2.1250 1.0687 5 6 2.7150 3.3544 0.7165 6 6 3.0810 4.3928 1.5857 7 1 3.5324 5.2919 1.1928 8 6 2.8619 4.2641 2.9584 9 7 2.5122 3.1041 3.4608 10 14 3.0666 5.7440 4.0797 11 1 4.4351 5.7429 4.6559 12 1 2.8595 6.9896 3.2981 13 1 2.0677 5.6761 5.1763 14 6 2.7239 3.3952 -0.6977 15 6 3.0627 4.3742 -1.6289 16 6 3.5391 5.7292 -1.1727 17 6 2.9567 4.0872 -2.9748 18 6 2.5109 2.8203 -3.3754 19 6 2.1934 1.8829 -2.4524 20 7 2.2927 2.1574 -1.1177 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.3603 3.0145 4.4146 27 1 4.6076 5.6867 -0.9617 28 1 3.3525 6.4628 -1.9569 29 1 3.0016 6.0181 -0.2695 30 1 3.2149 4.8322 -3.7128 31 1 2.4260 2.5889 -4.4269 32 1 1.8494 0.9111 -2.7743 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261020963.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:11 Heat of formation + Delta-G solvation = 65.194235 kcal Electronic energy + Delta-G solvation = -15833.418356 eV Core-core repulsion = 13373.414619 eV Total energy + Delta-G solvation = -2460.003737 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.94556 -36.17234 -34.28133 -32.57503 -32.32772 -29.79854 -27.91869 -26.47444 -24.63249 -22.96055 -21.61385 -20.47922 -18.95722 -17.32804 -15.63374 -15.33663 -14.87060 -14.49168 -14.24510 -13.81217 -13.37184 -12.86481 -12.68226 -12.49244 -11.98588 -11.70071 -11.43209 -11.35079 -11.16781 -10.84402 -10.65955 -10.48093 -10.42908 -10.15105 -9.95383 -9.31548 -8.69600 -8.29648 -7.78228 -6.54312 -6.43769 -4.02839 2.03131 2.54633 3.08183 3.12762 3.16982 3.98403 4.12258 4.40999 4.54258 5.34908 5.51349 5.53500 5.57809 5.78265 5.89404 5.92241 6.04428 6.14479 6.21804 6.26129 6.37610 6.47999 6.52091 6.66890 6.71458 6.96690 7.18589 7.23718 7.29420 7.55021 7.58717 8.00953 8.30008 8.69803 8.77818 9.04831 9.79975 10.37728 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.022767 B = 0.011145 C = 0.007709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.555288 B = 2511.640311 C = 3631.362166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.027 4.027 3 C 0.170 3.830 4 N -0.455 5.455 5 C 0.224 3.776 6 C -0.423 4.423 7 H 0.092 0.908 8 C 0.070 3.930 9 N -0.744 5.744 10 Si 0.907 3.093 11 H -0.271 1.271 12 H -0.261 1.261 13 H -0.277 1.277 14 C -0.144 4.144 15 C 0.042 3.958 16 C -0.113 4.113 17 C -0.275 4.275 18 C -0.114 4.114 19 C -0.012 4.012 20 N -0.385 5.385 21 H 0.053 0.947 22 H 0.062 0.938 23 H 0.047 0.953 24 H 0.061 0.939 25 H 0.086 0.914 26 H 0.273 0.727 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.122 -0.977 -5.465 5.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.066 4.066 3 C -0.086 4.086 4 N -0.177 5.177 5 C 0.095 3.905 6 C -0.457 4.457 7 H 0.110 0.890 8 C -0.153 4.153 9 N -0.367 5.367 10 Si 0.731 3.269 11 H -0.196 1.196 12 H -0.185 1.185 13 H -0.202 1.202 14 C -0.244 4.244 15 C 0.040 3.960 16 C -0.170 4.170 17 C -0.295 4.295 18 C -0.136 4.136 19 C -0.129 4.129 20 N -0.066 5.066 21 H 0.072 0.928 22 H 0.081 0.919 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.104 0.896 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.123 0.877 31 H 0.134 0.866 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.312 -1.508 -4.501 4.925 hybrid contribution 0.142 0.779 -0.505 0.939 sum -1.170 -0.729 -5.007 5.193 Atomic orbital electron populations 1.21702 0.95153 1.00783 1.02337 1.19716 0.95480 0.89068 1.02356 1.23440 1.07935 0.96411 0.80791 1.70860 1.19579 1.04052 1.23224 1.18361 0.94586 0.91122 0.86409 1.18720 1.35666 1.00807 0.90470 0.89012 1.25942 0.93820 0.96637 0.98889 1.70176 1.29985 1.23175 1.13395 0.86320 0.78713 0.82083 0.79782 1.19620 1.18467 1.20189 1.19043 1.22288 0.88002 0.95052 1.19099 0.91754 0.93525 0.91662 1.20864 1.01363 0.92886 1.01912 1.20348 1.17031 0.97889 0.94186 1.20212 1.02082 0.93940 0.97367 1.20879 1.09707 1.00020 0.82334 1.42134 1.47579 1.12580 1.04283 0.92804 0.91880 0.93395 0.92062 0.89563 0.91594 0.91380 0.92767 0.89721 0.87747 0.86642 0.85187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.89 37.16 0.37 -1.94 16 2 C -0.03 -0.50 6.37 -27.89 -0.18 -0.68 16 3 C 0.17 4.09 7.19 -154.30 -1.11 2.98 16 4 N -0.46 -12.65 9.47 -7.89 -0.07 -12.73 16 5 C 0.22 6.24 6.71 -84.44 -0.57 5.68 16 6 C -0.42 -11.30 8.60 -38.31 -0.33 -11.63 16 7 H 0.09 2.26 5.24 -52.49 -0.27 1.98 16 8 C 0.07 1.79 5.47 -17.33 -0.09 1.70 16 9 N -0.74 -20.12 12.01 55.53 0.67 -19.45 16 10 Si 0.91 18.78 29.57 -169.99 -5.03 13.75 16 11 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 12 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 13 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 14 C -0.14 -3.71 6.68 -83.63 -0.56 -4.26 16 15 C 0.04 0.94 5.91 -104.31 -0.62 0.32 16 16 C -0.11 -2.17 9.04 36.01 0.33 -1.85 16 17 C -0.27 -5.58 9.81 -38.95 -0.38 -5.96 16 18 C -0.11 -2.16 9.98 -39.90 -0.40 -2.56 16 19 C -0.01 -0.23 10.77 -16.45 -0.18 -0.41 16 20 N -0.39 -9.22 2.95 -57.53 -0.17 -9.39 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.98 7.96 -51.93 -0.41 0.57 16 25 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 26 H 0.27 6.73 8.30 -40.82 -0.34 6.39 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.05 0.88 8.05 -51.93 -0.42 0.46 16 29 H 0.08 1.71 5.85 -51.93 -0.30 1.41 16 30 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.13 2.18 7.92 -52.49 -0.42 1.76 16 LS Contribution 271.89 15.07 4.10 4.10 Total: -1.00 -30.76 271.89 -8.14 -38.90 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -3.92 Total: 3.44 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -3.72 Total: -18.62 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.42 Total: -41.57 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.76 -8.14 -38.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261020963.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.095 kcal (2) G-P(sol) polarization free energy of solvation -30.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds