Wall clock time and date at job start Mon Mar 30 2020 02:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50692 * 109.46935 * 2 1 4 4 N 1.30374 * 124.94598 * 89.97905 * 3 2 1 5 5 C 1.35051 * 109.83181 * 180.02562 * 4 3 2 6 6 C 1.40279 * 126.59847 * 179.97438 * 5 4 3 7 7 H 1.08002 * 119.99258 * 172.24686 * 6 5 4 8 8 C 1.39597 * 120.00240 * 352.24916 * 6 5 4 9 9 N 1.31160 * 120.00248 * 10.67614 * 8 6 5 10 10 Si 1.86804 * 119.99918 * 190.68012 * 8 6 5 11 11 H 1.48491 * 109.47274 * 265.05924 * 10 8 6 12 12 H 1.48500 * 109.47104 * 25.06326 * 10 8 6 13 13 H 1.48496 * 109.46952 * 145.05734 * 10 8 6 14 14 C 1.41488 * 106.79488 * 0.22601 * 5 4 3 15 15 C 1.39294 * 133.63356 * 179.77000 * 14 5 4 16 16 C 1.50702 * 120.42550 * 0.02865 * 15 14 5 17 17 C 1.38023 * 119.14588 * 180.02562 * 15 14 5 18 18 C 1.40143 * 119.41541 * 0.02562 * 17 15 14 19 19 C 1.35330 * 120.38816 * 359.66050 * 18 17 15 20 20 N 1.36370 * 124.95517 * 269.99872 * 3 2 1 21 21 H 1.09003 * 109.47243 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47020 * 299.99551 * 1 2 3 23 23 H 1.08993 * 109.47437 * 59.99829 * 1 2 3 24 24 H 1.09001 * 109.47029 * 239.99932 * 2 1 3 25 25 H 1.09001 * 109.47211 * 120.00257 * 2 1 3 26 26 H 0.97001 * 120.00537 * 179.97438 * 9 8 6 27 27 H 1.08999 * 109.47412 * 83.84467 * 16 15 14 28 28 H 1.08997 * 109.46747 * 203.84715 * 16 15 14 29 29 H 1.09000 * 109.47278 * 323.84332 * 16 15 14 30 30 H 1.08002 * 120.29521 * 180.02562 * 17 15 14 31 31 H 1.08001 * 119.80470 * 180.02562 * 18 17 15 32 32 H 1.07998 * 119.65978 * 179.89235 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2808 2.1250 1.0687 5 6 2.7150 3.3544 0.7165 6 6 3.0810 4.3928 1.5857 7 1 3.5324 5.2919 1.1928 8 6 2.8619 4.2641 2.9584 9 7 2.5122 3.1041 3.4608 10 14 3.0666 5.7440 4.0797 11 1 4.4351 5.7429 4.6559 12 1 2.8595 6.9896 3.2981 13 1 2.0677 5.6761 5.1763 14 6 2.7239 3.3952 -0.6977 15 6 3.0627 4.3742 -1.6289 16 6 3.5391 5.7292 -1.1727 17 6 2.9567 4.0872 -2.9748 18 6 2.5109 2.8203 -3.3754 19 6 2.1934 1.8829 -2.4524 20 7 2.2927 2.1574 -1.1177 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.3603 3.0145 4.4146 27 1 4.6076 5.6867 -0.9617 28 1 3.3525 6.4628 -1.9569 29 1 3.0016 6.0181 -0.2695 30 1 3.2149 4.8322 -3.7128 31 1 2.4260 2.5889 -4.4269 32 1 1.8494 0.9111 -2.7743 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261020963.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:11 Heat of formation + Delta-G solvation = 48.143363 kcal Electronic energy + Delta-G solvation = -15834.157737 eV Core-core repulsion = 13373.414619 eV Total energy + Delta-G solvation = -2460.743118 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.73169 -37.87591 -36.01843 -34.29558 -33.86867 -31.51480 -29.72241 -28.11783 -26.32739 -24.49523 -23.32821 -22.26385 -20.64497 -19.14891 -17.33921 -17.08192 -16.57399 -16.23993 -15.85438 -15.30165 -14.90677 -14.51999 -14.30707 -14.04135 -13.51770 -13.18186 -13.11266 -13.04210 -12.68113 -12.42814 -12.17714 -12.10835 -11.97219 -11.83704 -11.63726 -11.07493 -10.49065 -10.19285 -9.56667 -8.37920 -8.24666 -5.92095 0.36257 0.82823 1.41499 1.45558 1.56610 2.27268 2.42278 2.55457 2.86206 3.62885 3.82737 4.02527 4.15755 4.28172 4.38569 4.46292 4.54555 4.65607 4.73486 4.84715 4.88057 4.95081 5.01933 5.15226 5.30422 5.35822 5.39571 5.53803 5.62612 5.79130 5.88606 6.23792 6.45845 6.88572 6.95343 7.22386 7.95502 8.58009 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.022767 B = 0.011145 C = 0.007709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.555288 B = 2511.640311 C = 3631.362166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.023 4.023 3 C 0.142 3.858 4 N -0.497 5.497 5 C 0.174 3.826 6 C -0.462 4.462 7 H 0.099 0.901 8 C 0.022 3.978 9 N -0.797 5.797 10 Si 0.982 3.018 11 H -0.264 1.264 12 H -0.252 1.252 13 H -0.274 1.274 14 C -0.165 4.165 15 C -0.001 4.001 16 C -0.106 4.106 17 C -0.242 4.242 18 C -0.120 4.120 19 C -0.018 4.018 20 N -0.386 5.386 21 H 0.093 0.907 22 H 0.033 0.967 23 H 0.047 0.953 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.275 0.725 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.140 0.860 31 H 0.166 0.834 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.240 -0.827 -8.545 8.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.062 4.062 3 C -0.113 4.113 4 N -0.219 5.219 5 C 0.045 3.955 6 C -0.496 4.496 7 H 0.117 0.883 8 C -0.195 4.195 9 N -0.423 5.423 10 Si 0.803 3.197 11 H -0.189 1.189 12 H -0.175 1.175 13 H -0.199 1.199 14 C -0.267 4.267 15 C -0.003 4.003 16 C -0.163 4.163 17 C -0.261 4.261 18 C -0.141 4.141 19 C -0.136 4.136 20 N -0.064 5.064 21 H 0.112 0.888 22 H 0.052 0.948 23 H 0.067 0.933 24 H 0.110 0.890 25 H 0.099 0.901 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.158 0.842 31 H 0.183 0.817 32 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.433 -1.374 -7.605 7.860 hybrid contribution 0.178 0.654 0.010 0.677 sum -1.255 -0.721 -7.595 7.731 Atomic orbital electron populations 1.21624 0.93525 1.02884 1.00866 1.19887 0.96731 0.86064 1.03538 1.24277 1.08496 0.98221 0.80311 1.70719 1.20547 1.04879 1.25724 1.18833 0.96761 0.91821 0.88091 1.19036 1.37709 1.01449 0.91452 0.88309 1.26864 0.93055 0.99505 1.00099 1.70304 1.32840 1.25490 1.13631 0.85190 0.78759 0.78313 0.77424 1.18861 1.17526 1.19881 1.19473 1.22598 0.89563 0.95069 1.19567 0.93826 0.94467 0.92417 1.20817 1.01112 0.92221 1.02160 1.21007 1.12338 0.99020 0.93770 1.20860 1.00625 0.92941 0.99697 1.21768 1.08630 1.02296 0.80864 1.42450 1.46249 1.11977 1.05757 0.88804 0.94815 0.93339 0.88953 0.90135 0.91560 0.91086 0.89401 0.91683 0.84205 0.81685 0.81301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 9.89 71.98 0.71 -3.41 16 2 C -0.02 -0.84 6.37 29.85 0.19 -0.65 16 3 C 0.14 6.98 7.19 137.73 0.99 7.97 16 4 N -0.50 -29.15 9.47 -178.88 -1.69 -30.85 16 5 C 0.17 10.23 6.71 39.95 0.27 10.50 16 6 C -0.46 -26.19 8.60 23.09 0.20 -25.99 16 7 H 0.10 5.14 5.24 -2.91 -0.02 5.13 16 8 C 0.02 1.17 5.47 85.12 0.47 1.64 16 9 N -0.80 -46.06 12.01 21.78 0.26 -45.79 16 10 Si 0.98 40.41 29.57 68.60 2.03 42.43 16 11 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 12 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 13 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 14 C -0.17 -8.63 6.68 39.29 0.26 -8.37 16 15 C 0.00 -0.04 5.91 -19.66 -0.12 -0.15 16 16 C -0.11 -3.98 9.04 71.24 0.64 -3.33 16 17 C -0.24 -8.78 9.81 22.68 0.22 -8.55 16 18 C -0.12 -3.94 9.98 22.06 0.22 -3.72 16 19 C -0.02 -0.67 10.77 83.27 0.90 0.23 16 20 N -0.39 -18.21 2.95 -335.91 -0.99 -19.20 16 21 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 22 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 23 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.09 2.71 7.96 -2.39 -0.02 2.69 16 25 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 26 H 0.27 14.47 8.30 -92.71 -0.77 13.70 16 27 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.09 2.60 8.05 -2.39 -0.02 2.58 16 29 H 0.06 2.68 5.85 -2.39 -0.01 2.67 16 30 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 31 H 0.17 3.85 8.06 -2.91 -0.02 3.83 16 32 H 0.17 4.80 7.92 -2.91 -0.02 4.78 16 Total: -1.00 -72.14 271.89 5.68 -66.46 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 1.12 Total: 20.78 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 4.95 Total: -33.83 kcal Atomic # 7 Polarization: -93.42 SS G_CDS: -2.42 Total: -95.84 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.43 kcal Total: -72.14 5.68 -66.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261020963.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.602 kcal (2) G-P(sol) polarization free energy of solvation -72.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds